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1OUP

Crystal structure of the periplasmic endonuclease vvn complexed with octamer double stranded dna

PDB DOI: 10.2210/pdb1oup/pdb

Classification: HYDROLASE/DNA
Organism(s): Bacteriophage P22 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2003-03-25
Deposition Author(s): Li, C.-L. , Yuan, H.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

1oup
Literature

Crystal structure of the periplasmic endonuclease vvn complexed with octamer double stranded dna

Li, C.-L. , Yuan, H.S.

Primary Citation of Related Structures: 1OUP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' c 8 NA GCGATCGC
5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' d 8 NA GCGATCGC
5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' f 8 NA GCGATCGC
5'-D(*GP*CP*GP*AP*TP*C)-3' e 6 NA GCGATC
5'-D(P*GP*C)-3' g 2 NA GC

Proteins
Molecule Chains Sequence Length Organism Sequence
Nuclease A 213 Bacteriophage P22 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGGRKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMSQEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ
Nuclease B 213 Bacteriophage P22 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) APPSSFSAAKQQAVKIYQDHPISFYCGCDIEWQGKKGIPNLETCGYQVRKQQTRASRIEWEAVVPAWQFGHHRQCWQKGGRKNCSKNDQQFRLMEADLHNLTPAIGEVNGDRSNFNFSQWNGVDGVSYGRCEMQVNFKQRKVMPPDRARGSIARTYLYMSQEYGFQLSKQQQQLMQAWNKSYPVDEWECTRDDRIAKIQGNHNPFVQQSCQTQ
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2003-03-25
Deposition Author(s): Li, C.-L. , Yuan, H.S.