1N5Y
Hiv-1 reverse transcriptase crosslinked to post-translocation aztmp-terminated dna (complex p)
PDB DOI: 10.2210/pdb1n5y/pdb
Classification: TRANSFERASE/IMMUNE SYSTEM/DNA Organism(s): Human Immunodeficiency Virus 1 , Mus Musculus , Synthetic Construct
Deposited: 2002-11-07 Deposition Author(s): Arnold, E. , Birktoft, J.J. , Boyer, P.L. , Clark Jr., A.D. , Das, K. , Hughes, S.H. , Ilankumaran, P. , Jerina, D.M. , Ramesha, A.R. , Sarafianos, S.G. , Sayer, J.M. , Tuske, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.1 Å
Hiv-1 reverse transcriptase crosslinked to post-translocation aztmp-terminated dna (complex p)
Arnold, E. , Birktoft, J.J. , Boyer, P.L. , Clark Jr., A.D. , Das, K. , Hughes, S.H. , Ilankumaran, P. , Jerina, D.M. , Ramesha, A.R. , Sarafianos, S.G. , Sayer, J.M. , Tuske, S.
Primary Citation of Related Structures: 1N5Y
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' | t | 27 | NA | ATGCTAGGCGCCCGAACAGGGACTGTG |
| 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(ATM))-3' | p | 21 | NA | ACAGTCCCTGTTCGGGCGCCT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| REVERSE TRANSCRIPTASE | A | 558 | Human Immunodeficiency Virus 1 , Mus Musculus , Synthetic Construct | PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDICKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK |
| REVERSE TRANSCRIPTASE | B | 430 | Human Immunodeficiency Virus 1 , Mus Musculus , Synthetic Construct | PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLE |
| monoclonal antibody (light chain) | L | 211 | Human Immunodeficiency Virus 1 , Mus Musculus , Synthetic Construct | DIQMTQTTSSLSASLGDRVTISCSASQDISSYLNWYQQKPEGTVKLLIYYTSSLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR |
| monoclonal antibody (heavy chain) | H | 225 | Human Immunodeficiency Virus 1 , Mus Musculus , Synthetic Construct | QITLKESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQSAITSVTDSAMDHWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPADC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2002-11-07 Deposition Author(s): Arnold, E. , Birktoft, J.J. , Boyer, P.L. , Clark Jr., A.D. , Das, K. , Hughes, S.H. , Ilankumaran, P. , Jerina, D.M. , Ramesha, A.R. , Sarafianos, S.G. , Sayer, J.M. , Tuske, S.