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FASTA Sequence PDB Format mmCIF Format
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1KNZ

Recognition of the rotavirus mrna 3' consensus by an asymmetric nsp3 homodimer

PDB DOI: 10.2210/pdb1knz/pdb

Classification: Viral protein/RNA
Organism(s): Simian Rotavirus A/Sa11 , Synthetic Construct

Deposited: 2001-12-19
Deposition Author(s): Burley, S.K. , Deo, R.C. , Groft, C.M. , Rajashankar, K.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å

1knz
Literature

Recognition of the rotavirus mrna 3' consensus by an asymmetric nsp3 homodimer

Burley, S.K. , Deo, R.C. , Groft, C.M. , Rajashankar, K.R.

Primary Citation of Related Structures: 1KNZ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-R(*UP*GP*AP*CP*C)-3' w 5 NA UGACC
5'-R(*UP*GP*AP*CP*C)-3' x 5 NA UGACC
5'-R(*UP*GP*AP*CP*C)-3' y 5 NA UGACC
5'-R(*UP*GP*AP*CP*C)-3' z 5 NA UGACC

Proteins
Molecule Chains Sequence Length Organism Sequence
Nonstructural RNA-binding Protein 34 A 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 B 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 C 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 D 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 I 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 J 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 M 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Nonstructural RNA-binding Protein 34 N 164 Simian Rotavirus A/Sa11 , Synthetic Construct LGSMESTQQMAVSIINSSFEAAVVAATSALENMGIEYDYQDIYSRVKNKFDFVMDDSGVKNNPIGKAITIDQALNNKFGSAIRNRNWLADTSRPAKLDEDVNKLRMMLSSKGIDQKMRVLNACFSVKRIPGKSSSIIKCTKLMRDKLERGEVEVDDSFVDEKME
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2001-12-19
Deposition Author(s): Burley, S.K. , Deo, R.C. , Groft, C.M. , Rajashankar, K.R.