1K82
Crystal structure of e.coli formamidopyrimidine-dna glycosylase (fpg) covalently trapped with dna
PDB DOI: 10.2210/pdb1k82/pdb
Classification: HYDROLASE/DNA Organism(s): Escherichia Coli , Synthetic Construct
Deposited: 2001-10-22 Deposition Author(s): Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Matz, E. , Shoham, G. , Zharkov, D.O.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.1 Å
Crystal structure of e.coli formamidopyrimidine-dna glycosylase (fpg) covalently trapped with dna
Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Matz, E. , Shoham, G. , Zharkov, D.O.
Primary Citation of Related Structures: 1K82
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | e | 13 | NA | GGCTTCCTCCTGG |
| 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | f | 13 | NA | GGCTTCCTCCTGG |
| 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | g | 13 | NA | GGCTTCCTCCTGG |
| 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3' | h | 13 | NA | GGCTTCCTCCTGG |
| 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | i | 13 | NA | CCAGGAXGAAGCC |
| 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | j | 13 | NA | CCAGGAXGAAGCC |
| 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | k | 13 | NA | CCAGGAXGAAGCC |
| 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' | l | 13 | NA | CCAGGAXGAAGCC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| formamidopyrimidine-DNA glycosylase | A | 268 | Escherichia Coli , Synthetic Construct | PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK |
| formamidopyrimidine-DNA glycosylase | B | 268 | Escherichia Coli , Synthetic Construct | PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK |
| formamidopyrimidine-DNA glycosylase | C | 268 | Escherichia Coli , Synthetic Construct | PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK |
| formamidopyrimidine-DNA glycosylase | D | 268 | Escherichia Coli , Synthetic Construct | PELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2001-10-22 Deposition Author(s): Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Matz, E. , Shoham, G. , Zharkov, D.O.