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1K3X

Crystal structure of a trapped reaction intermediate of the dna repair enzyme endonuclease viii with brominated-dna

PDB DOI: 10.2210/pdb1k3x/pdb

Classification: HYDROLASE/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2001-10-04
Deposition Author(s): Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Rieger, R.A. , Shoham, G. , Zharkov, D.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å

1k3x
Literature

Crystal structure of a trapped reaction intermediate of the dna repair enzyme endonuclease viii with brominated-dna

Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Rieger, R.A. , Shoham, G. , Zharkov, D.O.

Primary Citation of Related Structures: 1K3X


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3' b 13 NA GGCUUCAUCCUGG
5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' c 13 NA CCAGGAXGAAGCC

Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease VIII A 262 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2001-10-04
Deposition Author(s): Fernandes, A.S. , Gerchman, S.E. , Gilboa, R. , Golan, G. , Grollman, A.P. , Kycia, J.H. , Rieger, R.A. , Shoham, G. , Zharkov, D.O.