1H0M
Three-dimensional structure of the quorum sensing protein trar bound to its autoinducer and to its target dna
PDB DOI: 10.2210/pdb1h0m/pdb
Classification: TRANSCRIPTION/DNA Organism(s): Cerrena Sp. Rsd1 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2002-06-25 Deposition Author(s): Cortese, R. , De Francesco, R. , Di Marco, S. , Gargioli, C. , Muraglia, E. , Neddermann, P. , Vannini, A. , Volpari, C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
Three-dimensional structure of the quorum sensing protein trar bound to its autoinducer and to its target dna
Cortese, R. , De Francesco, R. , Di Marco, S. , Gargioli, C. , Muraglia, E. , Neddermann, P. , Vannini, A. , Volpari, C.
Primary Citation of Related Structures: 1H0M
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transcriptional activator protein TraR | A | 234 | Cerrena Sp. Rsd1 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI |
| Transcriptional activator protein TraR | B | 234 | Cerrena Sp. Rsd1 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI |
| Transcriptional activator protein TraR | C | 234 | Cerrena Sp. Rsd1 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI |
| Transcriptional activator protein TraR | D | 234 | Cerrena Sp. Rsd1 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | e | 18 | NA | ATGTGCAGATCTGCACAT |
| 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | f | 18 | NA | ATGTGCAGATCTGCACAT |
| 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | g | 18 | NA | ATGTGCAGATCTGCACAT |
| 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3' | h | 18 | NA | ATGTGCAGATCTGCACAT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2002-06-25 Deposition Author(s): Cortese, R. , De Francesco, R. , Di Marco, S. , Gargioli, C. , Muraglia, E. , Neddermann, P. , Vannini, A. , Volpari, C.