1EG0
Fitting of components with known structure into an 11.5 a cryo-em map of the e.coli 70s ribosome
PDB DOI: 10.2210/pdb1eg0/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli
Deposited: 2000-02-11 Deposition Author(s): Agrawal, R.K. , Frank, J. , Gabashvili, I.S. , Grassucci, R.A. , Penczek, P. , Spahn, C.M.T. , Svergun, D.I.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 11.5 Å
Fitting of components with known structure into an 11.5 a cryo-em map of the e.coli 70s ribosome
Agrawal, R.K. , Frank, J. , Gabashvili, I.S. , Grassucci, R.A. , Penczek, P. , Spahn, C.M.T. , Svergun, D.I.
Primary Citation of Related Structures: 1EG0
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| FRAGMENT OF 16S RRNA HELIX 23 | i | 33 | NA | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| FRAGMENT OF 23S RRNA | l | 57 | NA | CUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC |
| HELIX 95 OF 23S RRNA | m | 26 | NA | GCUCCUAGUACGAGAGGACCGGAGUG |
| FORMYL-METHIONYL-TRNA | o | 76 | NA | CGCGGGGUGGAGCAGCCGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PROTEIN (S15 RIBOSOMAL PROTEIN) | F | 89 | Escherichia Coli | MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG |
| PROTEIN (S17 RIBOSOMAL PROTEIN) | G | 93 | Escherichia Coli | SERNQRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAVRAGAGAGAA |
| PROTEIN (S20 RIBOSOMAL PROTEIN) | H | 100 | Escherichia Coli | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| PROTEIN (RIBOSOMAL PROTEIN L1) | N | 229 | Escherichia Coli | MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS |
| PROTEIN (RIBOSOMAL PROTEIN L6) | J | 171 | Escherichia Coli | MSRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL |
| PROTEIN (RIBOSOMAL PROTEIN L11) | K | 140 | Escherichia Coli | MAKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV |
| PROTEIN (S4 RIBOSOMAL PROTEIN) | A | 159 | Escherichia Coli | MKLSEYGLQLQEKQKLRHMYGVNERQFRKTFEEAGKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEANNYIPDYLSFDPEKMEGTYTRLPERSELPAEINEALIVEFYSR |
| PROTEIN (S5 RIBOSOMAL PROTEIN) | B | 148 | Escherichia Coli | MRRINPNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLK |
| PROTEIN (S6 RIBOSOMAL PROTEIN) | C | 97 | Escherichia Coli | MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPF |
| PROTEIN (S7 RIBOSOMAL PROTEIN) | D | 146 | Escherichia Coli | MARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGAVKKKEDVERMAE |
| PROTEIN (S8 RIBOSOMAL PROTEIN) | E | 138 | Escherichia Coli | MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2000-02-11 Deposition Author(s): Agrawal, R.K. , Frank, J. , Gabashvili, I.S. , Grassucci, R.A. , Penczek, P. , Spahn, C.M.T. , Svergun, D.I.