11LT
Cryo-em structure of ev-d68 b3 vlp bound by neutralizing antibody 1e11
PDB DOI: 10.2210/pdb11lt/pdb
Classification: VIRUS LIKE PARTICLE Organism(s): Human Enterovirus D68 , Macaca Mulatta
Deposited: 2026-03-03 Deposition Author(s): Cheng, J. , Du, H. , Kanekiyo, M. , Krug, P.W. , Kwong, P.D. , Lei, H. , Morano, N.C. , Moss, D.L. , Pierson, T.C. , Pletnev, S. , Rubin, S. , Ruckwardt, T.J. , Zhang, B. , Zhou, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.63 Å
Cryo-em structure of ev-d68 b3 vlp bound by neutralizing antibody 1e11
Cheng, J. , Du, H. , Kanekiyo, M. , Krug, P.W. , Kwong, P.D. , Lei, H. , Morano, N.C. , Moss, D.L. , Pierson, T.C. , Pletnev, S. , Rubin, S. , Ruckwardt, T.J. , Zhang, B. , Zhou, T.
Primary Citation of Related Structures: 11LT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein VP1 | A | 229 | Human Enterovirus D68 , Macaca Mulatta | VSETLVENFLSRAALVSKRSFEYKDHTSSTAQTDKNFFKWTINTRSFVQLRRKLELFTYLRFDAEITILTTVAVNGSNNNTYVGLPDLTLQAMFVPTGALTPEKQDSFHWQSGSNASVFFKISDPPARMTIPFMCINSAYSVFYDGFAGFEKTGLYGINPADTIGNLCVRIVNEHQPVGFTVTVRVYMKPKHIKAWAPRPPRTLPYMSIANANYKGKERAPNALNAIIG |
| Capsid protein VP0 | B | 212 | Human Enterovirus D68 , Macaca Mulatta | ANYCCAYGEWPNYLPDHEAVAIDKPTQPETATDRFYTLRSVKWEATSTGWWWKLPDALNNIGMFGQNVQHHYLYRSGFLIHVQCNATKFHQGALLVVAIPEHQRGAHNTTTSPGFDDIMKGEAGGTFNHPYVLDDGTSLACATIFPHQWINLRTNNSATIVLPWMNAAPMDFPLRHNQWTLAIIPVVPLGTRTMSSMVPITVSIAPMCCEFN |
| Capsid protein VP3 | C | 247 | Human Enterovirus D68 , Macaca Mulatta | GVPTYLLPGSGQFLTTDDHSSAPVLPCFNPTPEMHIPGQVRNMLEVVQVESMMEINNTESAVGMERLKVDISALTDVDQLLFNIPLDIQLDGPLRNTLVGNISRYYTHWSGSLEMTFMFCGSFMATGKLILCYTPPGGSCPTTRETAMLGTHIVWDFGLQSSITLIIPWISGSHYRMFNNDAKSTNANVGYVTCFMQTNLIVPSESSDTCSLIGFIAAKDDFSLRLMRDSPDIGQIDHLHGAEAAYQ |
| 1E11 Fab heavy chain | H | 123 | Human Enterovirus D68 , Macaca Mulatta | QVKLQQWGEGLVKPSETLSLTCAVYGGSIHGYYYWSWIRQPPGKGLEWIGYIYGDNFSTNYNPSLKNRVTISKDTPRNQFSLRLTSVTAADTALYFCAREAGSRNAYNWFDVWGPGVRVAVTS |
| 1E11 Fab light chain | L | 110 | Human Enterovirus D68 , Macaca Mulatta | QSALTQPPSVSRSLGQSVTISCTATSSDITFYYGVSWYQHHSGTAPRLLIYEVNERPSGVSNRFSGSKSGNTASLTISGVQADDEADYYCGTYRTGNTWVFGGGTRLTVL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-03-03 Deposition Author(s): Cheng, J. , Du, H. , Kanekiyo, M. , Krug, P.W. , Kwong, P.D. , Lei, H. , Morano, N.C. , Moss, D.L. , Pierson, T.C. , Pletnev, S. , Rubin, S. , Ruckwardt, T.J. , Zhang, B. , Zhou, T.