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11BP

The cryo-em structure of pakpunavirus p7-1 empty particle neck (portal:h-t-t)

PDB DOI: 10.2210/pdb11bp/pdb

Classification: VIRUS
Organism(s): Pakpunavirus

Deposited: 2026-02-16
Deposition Author(s): Bellis, N.F. , Cingolani, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Literature

The cryo-em structure of pakpunavirus p7-1 empty particle neck (portal:h-t-t)

Bellis, N.F. , Cingolani, G.

Primary Citation of Related Structures: 11BP


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein A 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein B 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein C 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein D 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein E 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein F 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein G 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein H 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein I 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein J 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein K 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein L 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Head to Tail protein gp72 M 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 N 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 O 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 P 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 Q 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 R 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 S 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 T 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 U 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 V 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 W 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 X 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2026-02-16
Deposition Author(s): Bellis, N.F. , Cingolani, G.