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10YF

Dna ligase iiia bound to nucleosome containing a nick at shl-2 (composite)

PDB DOI: 10.2210/pdb10yf/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2026-02-12
Deposition Author(s): Boesch, D.J. , Weaver, T.M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

10yf
Literature

Dna ligase iiia bound to nucleosome containing a nick at shl-2 (composite)

Boesch, D.J. , Weaver, T.M.

Primary Citation of Related Structures: 10YF


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 96 Homo Sapiens , Synthetic Construct PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGE
Histone H3.2 E 96 Homo Sapiens , Synthetic Construct PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGE
Histone H4 B 80 Homo Sapiens , Synthetic Construct LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H4 F 80 Homo Sapiens , Synthetic Construct LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 1-H C 107 Homo Sapiens , Synthetic Construct RAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2A type 1-H G 107 Homo Sapiens , Synthetic Construct RAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2B type 2-F D 92 Homo Sapiens , Synthetic Construct RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Histone H2B type 2-F H 92 Homo Sapiens , Synthetic Construct RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
DNA ligase 3 L 208 Homo Sapiens , Synthetic Construct QASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
601 I strand (non-damaged strand) i 147 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
601 J strand (damaged strand 1) j 56 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGG
601 K strand (damaged strand 2) k 91 NA TTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2026-02-12
Deposition Author(s): Boesch, D.J. , Weaver, T.M.