Cryo-em structure of sudan ebolavirus gp bound by three neutralizing antibodies 316l, 523s and 294s
PDB DOI: 10.2210/pdb10or/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus
Deposited: 2026-01-29 Deposition Author(s): Cheng, J. , Kwong, P.D. , Misasi, J. , Pierson, T.C. , Sullivan, N.J. , Zhao, B. , Zhou, T.
Method: ELECTRON MICROSCOPY Resolution: 2.46 Å
Cryo-em structure of sudan ebolavirus gp bound by three neutralizing antibodies 316l, 523s and 294s
Cheng, J. , Kwong, P.D. , Misasi, J. , Pierson, T.C. , Sullivan, N.J. , Zhao, B. , Zhou, T.
Primary Citation of Related Structures: 10OR
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope glycoprotein 1 | A | 204 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | SMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFK |
| Envelope glycoprotein 1 | C | 204 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | SMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFK |
| Envelope glycoprotein 1 | E | 204 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | SMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKETFLQSPPIREAVNYTENTSSYYATSYLEYEIENFGAQHSTTLFK |
| Envelope glycoprotein 2 | B | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | KCNPNLHYWTAQEQHNAAGIAWIPYFGPGAEGIYTEGLMHNQNALVCGLRQLANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWGGTCRILGPDCCIEPHDWTKNITDKINQIIHDFI |
| Envelope glycoprotein 2 | D | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | KCNPNLHYWTAQEQHNAAGIAWIPYFGPGAEGIYTEGLMHNQNALVCGLRQLANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWGGTCRILGPDCCIEPHDWTKNITDKINQIIHDFI |
| Envelope glycoprotein 2 | F | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | KCNPNLHYWTAQEQHNAAGIAWIPYFGPGAEGIYTEGLMHNQNALVCGLRQLANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWGGTCRILGPDCCIEPHDWTKNITDKINQIIHDFI |
| 316L Heavy Chain | G | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | EERLVESGGGLVQPGGSLRLSCAASGFTFGDYAMHWVRQVPGKSLEWLSGISWSGYTTYSADSVKGRFTISRDNAKNSLYLQMNRLRPEDTGLYYCVTLIGAIGIKDSLDVWGRGVLVTVSS |
| 316L Heavy Chain | I | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | EERLVESGGGLVQPGGSLRLSCAASGFTFGDYAMHWVRQVPGKSLEWLSGISWSGYTTYSADSVKGRFTISRDNAKNSLYLQMNRLRPEDTGLYYCVTLIGAIGIKDSLDVWGRGVLVTVSS |
| 316L Heavy Chain | K | 122 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | EERLVESGGGLVQPGGSLRLSCAASGFTFGDYAMHWVRQVPGKSLEWLSGISWSGYTTYSADSVKGRFTISRDNAKNSLYLQMNRLRPEDTGLYYCVTLIGAIGIKDSLDVWGRGVLVTVSS |
| 316L Light Chain | H | 111 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSGAPGQRVTVSCSGSSSNIGAGNYVQWYQQLPGTAPKVLIYQTEKRPSGTSDRFSGSKSDTSASLTINGLQSEDEADYYCQVYDSNLNGWVFGGGTRLTVL |
| 316L Light Chain | J | 111 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSGAPGQRVTVSCSGSSSNIGAGNYVQWYQQLPGTAPKVLIYQTEKRPSGTSDRFSGSKSDTSASLTINGLQSEDEADYYCQVYDSNLNGWVFGGGTRLTVL |
| 316L Light Chain | L | 111 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSGAPGQRVTVSCSGSSSNIGAGNYVQWYQQLPGTAPKVLIYQTEKRPSGTSDRFSGSKSDTSASLTINGLQSEDEADYYCQVYDSNLNGWVFGGGTRLTVL |
| 523S Heavy Chain | M | 124 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLVQSGAELKKPGASVKVSCKASGYTFSDHYVHWVRQAPGQGLEWMGRINPNSGGTNYAQRFLGRVTMTRDASISTAYLDLSSLRSDDTAVYYCARSSSSWSGHYYYYMDVWGKGTTVTVSS |
| 523S Heavy Chain | O | 124 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLVQSGAELKKPGASVKVSCKASGYTFSDHYVHWVRQAPGQGLEWMGRINPNSGGTNYAQRFLGRVTMTRDASISTAYLDLSSLRSDDTAVYYCARSSSSWSGHYYYYMDVWGKGTTVTVSS |
| 523S Heavy Chain | Q | 124 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLVQSGAELKKPGASVKVSCKASGYTFSDHYVHWVRQAPGQGLEWMGRINPNSGGTNYAQRFLGRVTMTRDASISTAYLDLSSLRSDDTAVYYCARSSSSWSGHYYYYMDVWGKGTTVTVSS |
| 523S Light Chain | N | 110 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSAAPGQRVTISCSGSTSNIASNFVSWYQQLPGTAPKLLIYDNHKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAGVFGGGTKVTVL |
| 523S Light Chain | P | 110 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSAAPGQRVTISCSGSTSNIASNFVSWYQQLPGTAPKLLIYDNHKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAGVFGGGTKVTVL |
| 523S Light Chain | R | 110 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QSVLTQPPSVSAAPGQRVTISCSGSTSNIASNFVSWYQQLPGTAPKLLIYDNHKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAGVFGGGTKVTVL |
| 294S Heavy Chain | S | 125 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYHWSWIRQHPGKGLEWIGNIYYNGRTYYNPSLKSRVTISVDTSENEFSLKLSSVTAADTAVYYCARDRRRPRIGHDYGMDVWGQGTKVIVSS |
| 294S Heavy Chain | U | 125 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYHWSWIRQHPGKGLEWIGNIYYNGRTYYNPSLKSRVTISVDTSENEFSLKLSSVTAADTAVYYCARDRRRPRIGHDYGMDVWGQGTKVIVSS |
| 294S Heavy Chain | W | 125 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | QVQLQESGPGLVKPSQTLSLTCTVSGGSISSGGYHWSWIRQHPGKGLEWIGNIYYNGRTYYNPSLKSRVTISVDTSENEFSLKLSSVTAADTAVYYCARDRRRPRIGHDYGMDVWGQGTKVIVSS |
| 294S Light Chain | T | 108 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | DIQMTQSPSSLSASVGDRVTISCRASQSISNFLNWYQQKPGQAPKLLIYTASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQIYNTGMYSFGQGTKLEIK |
| 294S Light Chain | V | 108 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | DIQMTQSPSSLSASVGDRVTISCRASQSISNFLNWYQQKPGQAPKLLIYTASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQIYNTGMYSFGQGTKLEIK |
| 294S Light Chain | X | 108 | Homo Sapiens , Macaca Mulatta , Sudan Ebolavirus | DIQMTQSPSSLSASVGDRVTISCRASQSISNFLNWYQQKPGQAPKLLIYTASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQIYNTGMYSFGQGTKLEIK |
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-01-29 Deposition Author(s): Cheng, J. , Kwong, P.D. , Misasi, J. , Pierson, T.C. , Sullivan, N.J. , Zhao, B. , Zhou, T.