Structure of t. thermophilus 70s ribosome complex with mrna, trnafmet, near-cognate trnalys with u-g mismatch in the a-site and antibiotic paromomycin Deposition Author(s): Demeshkina, N. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2016-02-22 Method: X-RAY DIFFRACTION Resolution: 2.99 Å Organism(s): Escherichia Coli K-12 , Thermus Thermophilus Hb8 , Synthetic Construct Sequences Data: 5IB7_13 , 5IB7_1G , 5IB7_1I , 5IB7_1A , 5IB7_2I , 5IB7_2A , 5IB7_3I , 5IB7_3A , 5IB7_4I , 5IB7_4A , 5IB7_5I , 5IB7_5A , 5IB7_6I , 5IB7_6A , 5IB7_7I , 5IB7_7A , 5IB7_8I , 5IB7_8A , 5IB7_9I , 5IB7_9A , 5IB7_AI , 5IB7_AA , 5IB7_1E , 5IB7_12 , 5IB7_BI , 5IB7_BA , 5IB7_1F , 5IB7_1B , 5IB7_1K , 5IB7_2K , 5IB7_2L , 5IB7_3K , 5IB7_1L , 5IB7_3L , 5IB7_4K , 5IB7_4L , 5IB7_1H , 5IB7_14 , 5IB7_16 , 5IB7_1J , 5IB7_71 , 5IB7_11 , 5IB7_19 , 5IB7_2E , 5IB7_22 , 5IB7_21 , 5IB7_29 , 5IB7_31 , 5IB7_39 , 5IB7_41 , 5IB7_49 , 5IB7_51 , 5IB7_59 , 5IB7_61 , 5IB7_69 , 5IB7_58 , 5IB7_15 , 5IB7_68 , 5IB7_25 , 5IB7_78 , 5IB7_35 , 5IB7_88 , 5IB7_45 , 5IB7_98 , 5IB7_55 , 5IB7_3E , 5IB7_32 , 5IB7_A8 , 5IB7_65 , 5IB7_B8 , 5IB7_75 , 5IB7_C8 , 5IB7_85 , 5IB7_D8 , 5IB7_95 , 5IB7_E8 , 5IB7_A5 , 5IB7_F8 , 5IB7_B5 , 5IB7_G8 , 5IB7_C5 , 5IB7_H8 , 5IB7_D5 , 5IB7_I8 , 5IB7_E5 , 5IB7_J8 , 5IB7_F5 , 5IB7_4E , 5IB7_42 , 5IB7_K8 , 5IB7_G5 , 5IB7_L8 , 5IB7_H5 , 5IB7_M8 , 5IB7_N8 , 5IB7_J5 , 5IB7_O8 , 5IB7_P8 , 5IB7_L5 , 5IB7_Q8 , 5IB7_M5 , 5IB7_5E , 5IB7_52 , 5IB7_6E , 5IB7_62 , 5IB7_7E , 5IB7_72 , 5IB7_8E , 5IB7_82
Structure of t. thermophilus 70s ribosome complex with mrna, trnafmet and near-cognate trnalys with u-g mismatch in the a-site Deposition Author(s): Demeshkina, N. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2016-02-22 Method: X-RAY DIFFRACTION Resolution: 3.13 Å Organism(s): Escherichia Coli K-12 , Thermus Thermophilus Hb8 , Synthetic Construct Sequences Data: 5IB8_13 , 5IB8_1G , 5IB8_1I , 5IB8_1A , 5IB8_2I , 5IB8_2A , 5IB8_3I , 5IB8_3A , 5IB8_4I , 5IB8_4A , 5IB8_5I , 5IB8_5A , 5IB8_6I , 5IB8_6A , 5IB8_7I , 5IB8_7A , 5IB8_8I , 5IB8_8A , 5IB8_9I , 5IB8_9A , 5IB8_AI , 5IB8_AA , 5IB8_1E , 5IB8_12 , 5IB8_BI , 5IB8_BA , 5IB8_1F , 5IB8_1B , 5IB8_1K , 5IB8_2K , 5IB8_2L , 5IB8_3K , 5IB8_3L , 5IB8_4K , 5IB8_4L , 5IB8_1H , 5IB8_14 , 5IB8_16 , 5IB8_1J , 5IB8_71 , 5IB8_11 , 5IB8_19 , 5IB8_2E , 5IB8_22 , 5IB8_21 , 5IB8_29 , 5IB8_31 , 5IB8_39 , 5IB8_41 , 5IB8_49 , 5IB8_51 , 5IB8_59 , 5IB8_61 , 5IB8_69 , 5IB8_58 , 5IB8_15 , 5IB8_68 , 5IB8_25 , 5IB8_78 , 5IB8_35 , 5IB8_88 , 5IB8_45 , 5IB8_98 , 5IB8_55 , 5IB8_3E , 5IB8_32 , 5IB8_A8 , 5IB8_65 , 5IB8_B8 , 5IB8_75 , 5IB8_C8 , 5IB8_85 , 5IB8_D8 , 5IB8_95 , 5IB8_E8 , 5IB8_A5 , 5IB8_F8 , 5IB8_B5 , 5IB8_G8 , 5IB8_C5 , 5IB8_H8 , 5IB8_D5 , 5IB8_I8 , 5IB8_E5 , 5IB8_J8 , 5IB8_F5 , 5IB8_4E , 5IB8_42 , 5IB8_K8 , 5IB8_G5 , 5IB8_L8 , 5IB8_H5 , 5IB8_M8 , 5IB8_N8 , 5IB8_J5 , 5IB8_P8 , 5IB8_L5 , 5IB8_Q8 , 5IB8_M5 , 5IB8_1L , 5IB8_5E , 5IB8_52 , 5IB8_6E , 5IB8_62 , 5IB8_7E , 5IB8_72 , 5IB8_8E , 5IB8_82
Structure of t. thermophilus 70s ribosome complex with mrna, trnafmet and cognate trnaval in the a-site Deposition Author(s): Demeshkina, N. , Rozov, A. , Yusupov, M. , Yusupova, G.
Date: 2016-02-22 Method: X-RAY DIFFRACTION Resolution: 2.96 Å Organism(s): Escherichia Coli K-12 , Thermus Thermophilus Hb8 , Synthetic Construct Sequences Data: 5IBB_13 , 5IBB_1G , 5IBB_1I , 5IBB_1A , 5IBB_2I , 5IBB_2A , 5IBB_3I , 5IBB_3A , 5IBB_4I , 5IBB_4A , 5IBB_5I , 5IBB_5A , 5IBB_6I , 5IBB_6A , 5IBB_7I , 5IBB_7A , 5IBB_8I , 5IBB_8A , 5IBB_9I , 5IBB_9A , 5IBB_AI , 5IBB_AA , 5IBB_1E , 5IBB_12 , 5IBB_BI , 5IBB_BA , 5IBB_1F , 5IBB_1B , 5IBB_1K , 5IBB_2K , 5IBB_2L , 5IBB_3K , 5IBB_3L , 5IBB_4K , 5IBB_4L , 5IBB_1H , 5IBB_14 , 5IBB_16 , 5IBB_1J , 5IBB_71 , 5IBB_79 , 5IBB_11 , 5IBB_19 , 5IBB_2E , 5IBB_22 , 5IBB_21 , 5IBB_29 , 5IBB_31 , 5IBB_39 , 5IBB_41 , 5IBB_49 , 5IBB_51 , 5IBB_59 , 5IBB_61 , 5IBB_69 , 5IBB_58 , 5IBB_15 , 5IBB_68 , 5IBB_25 , 5IBB_78 , 5IBB_35 , 5IBB_88 , 5IBB_45 , 5IBB_98 , 5IBB_55 , 5IBB_3E , 5IBB_32 , 5IBB_A8 , 5IBB_65 , 5IBB_B8 , 5IBB_75 , 5IBB_C8 , 5IBB_85 , 5IBB_D8 , 5IBB_95 , 5IBB_E8 , 5IBB_A5 , 5IBB_F8 , 5IBB_B5 , 5IBB_G8 , 5IBB_C5 , 5IBB_H8 , 5IBB_D5 , 5IBB_I8 , 5IBB_E5 , 5IBB_J8 , 5IBB_F5 , 5IBB_4E , 5IBB_42 , 5IBB_K8 , 5IBB_G5 , 5IBB_L8 , 5IBB_H5 , 5IBB_M8 , 5IBB_I5 , 5IBB_N8 , 5IBB_J5 , 5IBB_P8 , 5IBB_L5 , 5IBB_Q8 , 5IBB_M5 , 5IBB_1L , 5IBB_5E , 5IBB_52 , 5IBB_6E , 5IBB_62 , 5IBB_7E , 5IBB_72 , 5IBB_8E , 5IBB_82
Crystal structure of the e. coli type 1 pilus subunit fimg (engineered variant with substitution q134e; n-terminal fimg residues 1-12 truncated) in complex with the donor strand peptide dsf_t4r-t6r-d13n Deposition Author(s): Capitani, G. , Eras, J. , Giese, C. , Glockshuber, R. , Kern, A. , Scharer, M.A.
Date: 2016-03-11 Method: X-RAY DIFFRACTION Resolution: 1.5 Å Organism(s): Escherichia Coli K-12 , Synthetic Construct Sequences Data: 5IQM_G , 5IQM_A , 5IQM_F , 5IQM_B
Crystal structure of the e. coli type 1 pilus subunit fimg (engineered variant with substitution q134e; n-terminal fimg residues 1-12 truncated) in complex with the donor strand peptide dsf_sririrgyvr Deposition Author(s): Capitani, G. , Eras, J. , Giese, C. , Glockshuber, R. , Kern, A. , Scharer, M.A.
Date: 2016-03-11 Method: X-RAY DIFFRACTION Resolution: 1 Å Organism(s): Escherichia Coli K-12 , Synthetic Construct Sequences Data: 5IQN_A , 5IQN_G , 5IQN_B , 5IQN_F
Structure of rela bound to the 70s ribosome Deposition Author(s): Brown, A. , Fernandez, I.S. , Gordiyenko, Y. , Ramakrishnan, V.
Date: 2016-03-11 Method: ELECTRON MICROSCOPY Resolution: 3.0 Å Organism(s): Escherichia Coli K-12 , Synthetic Construct Sequences Data: 5IQR_B , 5IQR_K , 5IQR_L , 5IQR_M , 5IQR_N , 5IQR_O , 5IQR_P , 5IQR_Q , 5IQR_R , 5IQR_S , 5IQR_T , 5IQR_C , 5IQR_U , 5IQR_V , 5IQR_W , 5IQR_X , 5IQR_Y , 5IQR_Z , 5IQR_A , 5IQR_D , 5IQR_E , 5IQR_F , 5IQR_G , 5IQR_H , 5IQR_I , 5IQR_J , 5IQR_1 , 5IQR_2 , 5IQR_3 , 5IQR_4 , 5IQR_5 , 5IQR_6 , 5IQR_7 , 5IQR_8
E. coli release factor 1 bound to the 70s ribosome in response to a pseudouridylated stop codon Deposition Author(s): Korostelev, A.A. , Svidritskiy, E.
Date: 2016-03-31 Method: X-RAY DIFFRACTION Resolution: 3.1 Å Organism(s): Escherichia Coli (Strain K12) , Escherichia Coli K-12 , Thermus Thermophilus (Strain Hb27 / Atcc Baa-163 / Dsm 7039) , Thermus Thermophilus (Strain Hb8 / Atcc 27634 / Dsm 579) , Thermus Thermophilus Hb27 , Synthetic Construct Sequences Data: 5J4D_A , 5J4D_FB , 5J4D_J , 5J4D_OB , 5J4D_K , 5J4D_PB , 5J4D_L , 5J4D_QB , 5J4D_M , 5J4D_RB , 5J4D_N , 5J4D_SB , 5J4D_O , 5J4D_TB , 5J4D_P , 5J4D_UB , 5J4D_Q , 5J4D_VB , 5J4D_R , 5J4D_WB , 5J4D_S , 5J4D_XB , 5J4D_B , 5J4D_GB , 5J4D_T , 5J4D_YB , 5J4D_U , 5J4D_ZB , 5J4D_V , 5J4D_AC , 5J4D_W , 5J4D_BC , 5J4D_X , 5J4D_CC , 5J4D_Y , 5J4D_DC , 5J4D_Z , 5J4D_EC , 5J4D_AA , 5J4D_FC , 5J4D_BA , 5J4D_GC , 5J4D_CA , 5J4D_HC , 5J4D_C , 5J4D_HB , 5J4D_DA , 5J4D_IC , 5J4D_EA , 5J4D_JC , 5J4D_FA , 5J4D_KC , 5J4D_GA , 5J4D_LC , 5J4D_HA , 5J4D_MC , 5J4D_JA , 5J4D_OC , 5J4D_KA , 5J4D_PC , 5J4D_LA , 5J4D_QC , 5J4D_MA , 5J4D_RC , 5J4D_NA , 5J4D_SC , 5J4D_D , 5J4D_IA , 5J4D_IB , 5J4D_NC , 5J4D_OA , 5J4D_TC , 5J4D_PA , 5J4D_UC , 5J4D_QA , 5J4D_VC , 5J4D_RA , 5J4D_WC , 5J4D_SA , 5J4D_XC , 5J4D_TA , 5J4D_YC , 5J4D_UA , 5J4D_ZC , 5J4D_VA , 5J4D_AD , 5J4D_WA , 5J4D_BD , 5J4D_XA , 5J4D_CD , 5J4D_E , 5J4D_JB , 5J4D_YA , 5J4D_DD , 5J4D_ZA , 5J4D_ED , 5J4D_AB , 5J4D_FD , 5J4D_BB , 5J4D_GD , 5J4D_CB , 5J4D_HD , 5J4D_DB , 5J4D_ID , 5J4D_F , 5J4D_KB , 5J4D_G , 5J4D_LB , 5J4D_H , 5J4D_MB , 5J4D_I , 5J4D_NB
Structure of the wild-type 70s e coli ribosome bound to tigecycline Deposition Author(s): Cocozaki, A. , Ferguson, A.
Date: 2016-04-08 Method: X-RAY DIFFRACTION Resolution: 2.96 Å Organism(s): Escherichia Coli , Escherichia Coli (Strain K12) , Escherichia Coli K-12 Sequences Data: 5J91_AA , 5J91_BA , 5J91_AJ , 5J91_BJ , 5J91_AK , 5J91_BK , 5J91_AL , 5J91_BL , 5J91_AM , 5J91_BM , 5J91_AN , 5J91_BN , 5J91_AO , 5J91_BO , 5J91_AP , 5J91_BP , 5J91_AQ , 5J91_BQ , 5J91_AR , 5J91_BR , 5J91_AS , 5J91_BS , 5J91_AB , 5J91_BB , 5J91_AT , 5J91_BT , 5J91_AU , 5J91_BU , 5J91_C1 , 5J91_D1 , 5J91_C2 , 5J91_D2 , 5J91_C3 , 5J91_D3 , 5J91_C4 , 5J91_D4 , 5J91_C5 , 5J91_D5 , 5J91_C0 , 5J91_D0 , 5J91_CB , 5J91_DB , 5J91_CC , 5J91_DC , 5J91_AC , 5J91_BC , 5J91_CD , 5J91_CA , 5J91_DD , 5J91_CE , 5J91_DE , 5J91_CF , 5J91_DF , 5J91_CG , 5J91_DG , 5J91_CH , 5J91_DH , 5J91_CJ , 5J91_DJ , 5J91_CK , 5J91_DK , 5J91_CL , 5J91_DL , 5J91_AD , 5J91_BD , 5J91_CM , 5J91_DM , 5J91_CN , 5J91_DN , 5J91_CO , 5J91_DO , 5J91_CP , 5J91_DP , 5J91_CQ , 5J91_DQ , 5J91_CR , 5J91_DR , 5J91_CS , 5J91_DS , 5J91_CT , 5J91_DT , 5J91_CU , 5J91_DU , 5J91_CV , 5J91_DV , 5J91_AE , 5J91_BE , 5J91_CW , 5J91_DW , 5J91_CX , 5J91_DX , 5J91_CY , 5J91_DY , 5J91_CZ , 5J91_DZ , 5J91_DI , 5J91_DA , 5J91_AF , 5J91_BF , 5J91_AG , 5J91_BG , 5J91_AH , 5J91_BH , 5J91_AI , 5J91_BI
Structure of the escherichia coli ribosome with the u1052g mutation in the 16s rrna Deposition Author(s): Cocozaki, A. , Ferguson, A.
Date: 2016-04-14 Method: X-RAY DIFFRACTION Resolution: 3.03 Å Organism(s): Escherichia Coli K-12 Sequences Data: 5JC9_AA , 5JC9_BA , 5JC9_AJ , 5JC9_BJ , 5JC9_AK , 5JC9_BK , 5JC9_AL , 5JC9_BL , 5JC9_AM , 5JC9_BM , 5JC9_AN , 5JC9_BN , 5JC9_AO , 5JC9_BO , 5JC9_AP , 5JC9_BP , 5JC9_AQ , 5JC9_BQ , 5JC9_AR , 5JC9_BR , 5JC9_AS , 5JC9_BS , 5JC9_AB , 5JC9_BB , 5JC9_AT , 5JC9_BT , 5JC9_AU , 5JC9_BU , 5JC9_C1 , 5JC9_D1 , 5JC9_C2 , 5JC9_D2 , 5JC9_C3 , 5JC9_D3 , 5JC9_C4 , 5JC9_D4 , 5JC9_C5 , 5JC9_D5 , 5JC9_C0 , 5JC9_D0 , 5JC9_CB , 5JC9_DB , 5JC9_CC , 5JC9_DC , 5JC9_AC , 5JC9_BC , 5JC9_CD , 5JC9_CA , 5JC9_DD , 5JC9_CE , 5JC9_DE , 5JC9_CF , 5JC9_DF , 5JC9_CG , 5JC9_DG , 5JC9_CH , 5JC9_DH , 5JC9_CJ , 5JC9_DJ , 5JC9_CK , 5JC9_DK , 5JC9_CL , 5JC9_DL , 5JC9_AD , 5JC9_BD , 5JC9_CM , 5JC9_DM , 5JC9_CN , 5JC9_DN , 5JC9_CO , 5JC9_DO , 5JC9_CP , 5JC9_DP , 5JC9_CQ , 5JC9_DQ , 5JC9_CR , 5JC9_DR , 5JC9_CS , 5JC9_DS , 5JC9_CT , 5JC9_DT , 5JC9_CU , 5JC9_DU , 5JC9_CV , 5JC9_DV , 5JC9_AE , 5JC9_BE , 5JC9_CW , 5JC9_DW , 5JC9_CX , 5JC9_DX , 5JC9_CY , 5JC9_DY , 5JC9_CZ , 5JC9_DZ , 5JC9_DI , 5JC9_DA , 5JC9_AF , 5JC9_BF , 5JC9_AG , 5JC9_BG , 5JC9_AH , 5JC9_BH , 5JC9_AI , 5JC9_BI
E. coli ecfict in complex with ecfica mutant e28g Deposition Author(s): Schirmer, T. , Stanger, F.V.
Date: 2016-04-19 Method: X-RAY DIFFRACTION Resolution: 2.4 Å Organism(s): Escherichia Coli , Escherichia Coli K-12 Sequences Data: 5JFZ_A , 5JFZ_C , 5JFZ_E , 5JFZ_B , 5JFZ_D , 5JFZ_F