Search Query :
5DGE
Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome Deposition Author(s): Dever, T.E. , Mailliot, J. , Melnikov, S. , Micura, R. , Rigger, L. , Shin, B.-S. , Yusupov, M. , Yusupova, G.
Date: 2015-08-27 Method: X-RAY DIFFRACTION Resolution: 3.45 Å Organism(s): Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Saccharomyces Cerevisiae S288C Sequences Data: 5DGE_2 , 5DGE_6 , 5DGE_S8 , 5DGE_S9 , 5DGE_C0 , 5DGE_C1 , 5DGE_C2 , 5DGE_C3 , 5DGE_C4 , 5DGE_C5 , 5DGE_C6 , 5DGE_C7 , 5DGE_S0 , 5DGE_C8 , 5DGE_C9 , 5DGE_D0 , 5DGE_D1 , 5DGE_D2 , 5DGE_D3 , 5DGE_D4 , 5DGE_D5 , 5DGE_D6 , 5DGE_D7 , 5DGE_S1 , 5DGE_D8 , 5DGE_D9 , 5DGE_E0 , 5DGE_E1 , 5DGE_SR , 5DGE_SM , 5DGE_1 , 5DGE_5 , 5DGE_3 , 5DGE_7 , 5DGE_4 , 5DGE_8 , 5DGE_L2 , 5DGE_S2 , 5DGE_L3 , 5DGE_L4 , 5DGE_L5 , 5DGE_L6 , 5DGE_L7 , 5DGE_L8 , 5DGE_L9 , 5DGE_M0 , 5DGE_M1 , 5DGE_M3 , 5DGE_S3 , 5DGE_M4 , 5DGE_M5 , 5DGE_M6 , 5DGE_M7 , 5DGE_M8 , 5DGE_M9 , 5DGE_N0 , 5DGE_N1 , 5DGE_N2 , 5DGE_N3 , 5DGE_S4 , 5DGE_N4 , 5DGE_N5 , 5DGE_N6 , 5DGE_N7 , 5DGE_N8 , 5DGE_N9 , 5DGE_O0 , 5DGE_O1 , 5DGE_O2 , 5DGE_O3 , 5DGE_S5 , 5DGE_O4 , 5DGE_O5 , 5DGE_O6 , 5DGE_O7 , 5DGE_O8 , 5DGE_O9 , 5DGE_Q0 , 5DGE_Q1 , 5DGE_Q2 , 5DGE_Q3 , 5DGE_S6 , 5DGE_M2 , 5DGE_P0 , 5DGE_P1 , 5DGE_P2 , 5DGE_F , 5DGE_B , 5DGE_C , 5DGE_S7
5DGF
Complex of yeast 80s ribosome with hypusine-containing/non-modified eif5a and/or a peptidyl-trna analog Deposition Author(s): Dever, T.E. , Mailliot, J. , Melnikov, S. , Micura, R. , Rigger, L. , Shin, B.-S. , Yusupov, M. , Yusupova, G.
Date: 2015-08-27 Method: X-RAY DIFFRACTION Resolution: 3.3 Å Organism(s): Saccharomyces Cerevisiae S288C Sequences Data: 5DGF_2 , 5DGF_6 , 5DGF_S8 , 5DGF_S9 , 5DGF_C0 , 5DGF_C1 , 5DGF_C2 , 5DGF_C3 , 5DGF_C4 , 5DGF_C5 , 5DGF_C6 , 5DGF_C7 , 5DGF_S0 , 5DGF_C8 , 5DGF_C9 , 5DGF_D0 , 5DGF_D1 , 5DGF_D2 , 5DGF_D3 , 5DGF_D4 , 5DGF_D5 , 5DGF_D6 , 5DGF_D7 , 5DGF_S1 , 5DGF_D8 , 5DGF_D9 , 5DGF_E0 , 5DGF_E1 , 5DGF_SR , 5DGF_SM , 5DGF_1 , 5DGF_5 , 5DGF_3 , 5DGF_7 , 5DGF_4 , 5DGF_8 , 5DGF_L2 , 5DGF_S2 , 5DGF_L3 , 5DGF_L4 , 5DGF_L5 , 5DGF_L6 , 5DGF_L7 , 5DGF_L8 , 5DGF_L9 , 5DGF_M0 , 5DGF_M1 , 5DGF_M3 , 5DGF_S3 , 5DGF_M4 , 5DGF_M5 , 5DGF_M6 , 5DGF_M7 , 5DGF_M8 , 5DGF_M9 , 5DGF_N0 , 5DGF_N1 , 5DGF_N2 , 5DGF_N3 , 5DGF_S4 , 5DGF_N4 , 5DGF_N5 , 5DGF_N6 , 5DGF_N7 , 5DGF_N8 , 5DGF_N9 , 5DGF_O0 , 5DGF_O1 , 5DGF_O2 , 5DGF_O3 , 5DGF_S5 , 5DGF_O4 , 5DGF_O5 , 5DGF_O6 , 5DGF_O7 , 5DGF_O8 , 5DGF_O9 , 5DGF_Q0 , 5DGF_Q1 , 5DGF_Q2 , 5DGF_Q3 , 5DGF_S6 , 5DGF_M2 , 5DGF_P0 , 5DGF_P1 , 5DGF_P2 , 5DGF_F , 5DGF_B , 5DGF_C , 5DGF_S7
5DGV
Complex of yeast 80s ribosome with hypusine-containing/non-modified eif5a and/or a peptidyl-trna analog Deposition Author(s): Dever, T.E. , Mailliot, J. , Melnikov, S. , Micura, R. , Rigger, L. , Shin, B.-S. , Yusupov, M. , Yusupova, G.
Date: 2015-08-28 Method: X-RAY DIFFRACTION Resolution: 3.1 Å Organism(s): Saccharomyces Cerevisiae S288C Sequences Data: 5DGV_2 , 5DGV_6 , 5DGV_S8 , 5DGV_S9 , 5DGV_C0 , 5DGV_C1 , 5DGV_C2 , 5DGV_C3 , 5DGV_C4 , 5DGV_C5 , 5DGV_C6 , 5DGV_C7 , 5DGV_S0 , 5DGV_C8 , 5DGV_C9 , 5DGV_D0 , 5DGV_D1 , 5DGV_D2 , 5DGV_D3 , 5DGV_D4 , 5DGV_D5 , 5DGV_D6 , 5DGV_D7 , 5DGV_S1 , 5DGV_D8 , 5DGV_D9 , 5DGV_E0 , 5DGV_E1 , 5DGV_SR , 5DGV_SM , 5DGV_1 , 5DGV_5 , 5DGV_3 , 5DGV_7 , 5DGV_4 , 5DGV_8 , 5DGV_L2 , 5DGV_S2 , 5DGV_L3 , 5DGV_L4 , 5DGV_L5 , 5DGV_L6 , 5DGV_L7 , 5DGV_L8 , 5DGV_L9 , 5DGV_M0 , 5DGV_M1 , 5DGV_M3 , 5DGV_S3 , 5DGV_M4 , 5DGV_M5 , 5DGV_M6 , 5DGV_M7 , 5DGV_M8 , 5DGV_M9 , 5DGV_N0 , 5DGV_N1 , 5DGV_N2 , 5DGV_N3 , 5DGV_S4 , 5DGV_N4 , 5DGV_N5 , 5DGV_N6 , 5DGV_N7 , 5DGV_N8 , 5DGV_N9 , 5DGV_O0 , 5DGV_O1 , 5DGV_O2 , 5DGV_O3 , 5DGV_S5 , 5DGV_O4 , 5DGV_O5 , 5DGV_O6 , 5DGV_O7 , 5DGV_O8 , 5DGV_O9 , 5DGV_Q0 , 5DGV_Q1 , 5DGV_Q2 , 5DGV_Q3 , 5DGV_S6 , 5DGV_M2 , 5DGV_P0 , 5DGV_P1 , 5DGV_P2 , 5DGV_C , 5DGV_D , 5DGV_S7
5DUN
The crystal structure of ome substituted twister ribozyme Deposition Author(s): Micura, R. , Patel, D.J. , Rajashankar, K.R. , Ren, A.
Date: 2015-09-19 Method: X-RAY DIFFRACTION Resolution: 2.64 Å Organism(s): N.A. Sequences Data: 5DUN_A
5MRX
27-nt srl with a 5-hydroxymethyl cytidine modification Deposition Author(s): Ennifar, E. , Micura, R.
Date: 2016-12-28 Method: X-RAY DIFFRACTION Resolution: 0.851 Å Organism(s): N.A. Sequences Data: 5MRX_A
5NQI
E.coli 16s rrna sarcin-ricin loop containing a 5-hydroxymethylcytosine modification Deposition Author(s): Ennifar, E. , Micura, R.
Date: 2017-04-20 Method: X-RAY DIFFRACTION Resolution: 0.851 Å Organism(s): N.A. Sequences Data: 5NQI_A
6N9E
Crystal structure of the thermus thermophilus 70s ribosome in complex with a short substrate mimic cc-pmn and bound to mrna and p-site trna at 3.7a resolution Deposition Author(s): Khabibullina, N.F. , Mairhofer, E. , Melnikov, S.V. , Micura, R. , Polikanov, Y.S. , Reynolds, N.M. , Soll, D. , Vargas-Rodriguez, O.
Date: 2018-12-03 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Escherichia Coli , Thermus Thermophilus , Synthetic Construct Sequences Data: 6N9E_1A , 6N9E_2A , 6N9E_1O , 6N9E_2O , 6N9E_1P , 6N9E_2P , 6N9E_1Q , 6N9E_2Q , 6N9E_1R , 6N9E_2R , 6N9E_1S , 6N9E_2S , 6N9E_1T , 6N9E_2T , 6N9E_1U , 6N9E_2U , 6N9E_1V , 6N9E_2V , 6N9E_1W , 6N9E_2W , 6N9E_1X , 6N9E_2X , 6N9E_1B , 6N9E_2B , 6N9E_1Y , 6N9E_2Y , 6N9E_1Z , 6N9E_2Z , 6N9E_10 , 6N9E_20 , 6N9E_11 , 6N9E_21 , 6N9E_12 , 6N9E_22 , 6N9E_13 , 6N9E_23 , 6N9E_14 , 6N9E_24 , 6N9E_15 , 6N9E_25 , 6N9E_16 , 6N9E_26 , 6N9E_17 , 6N9E_27 , 6N9E_1D , 6N9E_2D , 6N9E_18 , 6N9E_28 , 6N9E_19 , 6N9E_29 , 6N9E_1C , 6N9E_2C , 6N9E_1E , 6N9E_2E , 6N9E_1F , 6N9E_2F , 6N9E_1G , 6N9E_2G , 6N9E_1H , 6N9E_2H , 6N9E_1I , 6N9E_2I , 6N9E_1J , 6N9E_2J , 6N9E_1K , 6N9E_2K , 6N9E_1L , 6N9E_2L , 6N9E_1M , 6N9E_2M , 6N9E_1N , 6N9E_2N
6N9F
Crystal structure of the thermus thermophilus 70s ribosome in complex with a short substrate mimic acca-dphe and bound to mrna and p-site trna at 3.7a resolution Deposition Author(s): Khabibullina, N.F. , Mairhofer, E. , Melnikov, S.V. , Micura, R. , Polikanov, Y.S. , Reynolds, N.M. , Soll, D. , Vargas-Rodriguez, O.
Date: 2018-12-03 Method: X-RAY DIFFRACTION Resolution: 3.7 Å Organism(s): Escherichia Coli , Thermus Thermophilus , Synthetic Construct Sequences Data: 6N9F_1A , 6N9F_2A , 6N9F_1O , 6N9F_2O , 6N9F_1P , 6N9F_2P , 6N9F_1Q , 6N9F_2Q , 6N9F_1R , 6N9F_2R , 6N9F_1S , 6N9F_2S , 6N9F_1T , 6N9F_2T , 6N9F_1U , 6N9F_2U , 6N9F_1V , 6N9F_2V , 6N9F_1W , 6N9F_2W , 6N9F_1X , 6N9F_2X , 6N9F_1B , 6N9F_2B , 6N9F_1Y , 6N9F_2Y , 6N9F_1Z , 6N9F_2Z , 6N9F_10 , 6N9F_20 , 6N9F_11 , 6N9F_21 , 6N9F_12 , 6N9F_22 , 6N9F_13 , 6N9F_23 , 6N9F_14 , 6N9F_24 , 6N9F_15 , 6N9F_25 , 6N9F_16 , 6N9F_26 , 6N9F_17 , 6N9F_27 , 6N9F_1D , 6N9F_2D , 6N9F_18 , 6N9F_28 , 6N9F_19 , 6N9F_29 , 6N9F_1C , 6N9F_2C , 6N9F_1E , 6N9F_2E , 6N9F_1F , 6N9F_2F , 6N9F_1G , 6N9F_2G , 6N9F_1H , 6N9F_2H , 6N9F_1I , 6N9F_2I , 6N9F_1J , 6N9F_2J , 6N9F_1K , 6N9F_2K , 6N9F_1L , 6N9F_2L , 6N9F_1M , 6N9F_2M , 6N9F_1N , 6N9F_2N
6QIQ
Crystal structure of seleno-derivative cag repeats with synthetic cmbl3a compound Deposition Author(s): Blaszczyk, L. , Kiliszek, A. , Micura, R. , Nakatani, K. , Rypniewski, W.
Date: 2019-01-21 Method: X-RAY DIFFRACTION Resolution: 2.519 Å Organism(s): N.A. Sequences Data: 6QIQ_A , 6QIQ_B
6UEY
Pistol ribozyme transition-state analog vanadate Deposition Author(s): Falschlunger, C. , Krasheninina, O. , Micura, R. , Patel, D.J. , Teplova, M.
Date: 2019-09-23 Method: X-RAY DIFFRACTION Resolution: 2.8 Å Organism(s): N.A. Sequences Data: 6UEY_A , 6UEY_C , 6UEY_B , 6UEY_D