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9JG9

Structure of the btpea effector and btaeb effector bound to the vgrg spike from the type vi secretion system

PDB DOI: 10.2210/pdb9jg9/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Bacteroides Fragilis

Deposited: 2024-09-06
Deposition Author(s): Chen, Z. , Gao, X. , Li, W.X. , Zheng, S.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å

9jg9
Literature

Structure of the btpea effector and btaeb effector bound to the vgrg spike from the type vi secretion system

Chen, Z. , Gao, X. , Li, W.X. , Zheng, S.N.

Primary Citation of Related Structures: 9JG9


Proteins
Molecule Chains Sequence Length Organism Sequence
DUF3289 family protein B 608 Bacteroides Fragilis MAGKEFVVDKAMCMCKYGAAPGKLMVTDNQFFRLNGTKLCASTMTLGNVIYPPGFGICKVNPMFPKPCVPAITQWNGQFSKITMMGGNPLTDKSKGTCSCGGPDCIEFMQTGQIPVPGSKQMQQATGEHQGELDAMGDPSALTKHPVDTPTSLLLKEGNILVKAVKGEAESFSGQTLIYEVEHYNTPIVSDEIRSHVKWKVTIGEKEETVDQPGTDVLELSVKEEWQGKKLCVQAYINQPSDNVKVNTQIKKWEFPIIVDRYKMPGLNDTGTDIADDMAYGYGVNTKKCVYSTLLIKQLIESYEQKHENKKIDNILSNSIDYDPEPPMFSTSSLDTKQKMERYIRVKNAKAIYSKEDFPKISSRIQEGVRFLRKGGDDFTDEELFADFEAMAKLAFSSLNSEMRGNIVRMIAKFRQNNGGVYEDSVLTDHIKKHPSTIRYCNQLETYIKKELQDSKGDVSTLEDIKIFFKGERDLLEDILKKRVNDKYHKKDFSLTPVYDAGFISFKNIGRKTEQIKNATQGYTIALNDIWSTEVIIKKYVLNGNSYTVDYRVTLWDHFGLDAPDLEANKVAAYGAGFRAWFILQHFRGYKPFITKITFDKTFKGKIQ
Peptidase C39-like domain-containing protein C 617 Bacteroides Fragilis MSDDKSQLTISIDIKAEDRKYQIVENSVTSILFKVSDTTTRYVYNIRMGEMRNESETTPEGLKNLNLKKECDLSVKIRTEADQAFVLSEKHRGNIMLVEFFKYEGIPVLCASCVLIVKPSDLKITQVIFKDSTGKEVGCGSVQYEANLKFALRVKYNRPLLRGEKAPKLKCKGYCTNAVTGEYEEISKFRVDENGAYTDTFYCDDGLQESHAGADYVFSFGINNPYGPPFMIEDTNVPVPSIQKIHLIGRNLKKPQITSVIWSSKEMIKFGEDSPRRKSINYNEDGFLHIHARGMYGQKVRVELFEKDSTGIKKLLLGLKDDVTILDNVVCVPVEMSGVYAKAAKGRHALAEGLSFEILAKVTPLDTSIAAFEQDDKSLIELQIYGKADEDKAAKSTVNGTMKFMIADVEEDEKGEEEKAIEEGVCPLCGKKHIDLRSKIDYQTQFDSRFGTKKEQNVACYKACKVILTNAGLSPNSAPNDNTVIQIGVEKSSTDNSSHSSSLTIDFVKASEGLNYINQQLETGYPILVGVDYKAGSPNSDKTTDHFIVIVGRGCKNNEVYYLFYEVGTGQQENGQYKGAHENNKLYLKKDNTLQGTPYHNSNKKYIVVQIRKNILS
Type VI secretion system spike protein VgrG E 618 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGNPEIETESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSMRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVDGQGRYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVVSNEDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSDQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSQGAATDNTVKSIRTRSGHTLEFNDDEGGDWGITIKDRNGCMFHFDTKGKNIEITAPETMTLNAQNININAGEQLNTSSGKETVMQIGTDFQQDVGGNAEIAIGESLTESIAKDSTNSIAGNLSVTVDENLMYDAQDMTLTAQGGMKLLANAKIGLKSSEGVDIAQ
Type VI secretion system spike protein VgrG F 618 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGNPEIETESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSMRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVDGQGRYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVVSNEDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSDQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSQGAATDNTVKSIRTRSGHTLEFNDDEGGDWGITIKDRNGCMFHFDTKGKNIEITAPETMTLNAQNININAGEQLNTSSGKETVMQIGTDFQQDVGGNAEIAIGESLTESIAKDSTNSIAGNLSVTVDENLMYDAQDMTLTAQGGMKLLANAKIGLKSSEGVDIAQ
Type VI secretion system spike protein VgrG G 618 Bacteroides Fragilis MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGNPEIETESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSMRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVDGQGRYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVVSNEDPKNQGRVKVQFMWQEVDGGESYWMRVQSPDAGKSDQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSQGAATDNTVKSIRTRSGHTLEFNDDEGGDWGITIKDRNGCMFHFDTKGKNIEITAPETMTLNAQNININAGEQLNTSSGKETVMQIGTDFQQDVGGNAEIAIGESLTESIAKDSTNSIAGNLSVTVDENLMYDAQDMTLTAQGGMKLLANAKIGLKSSEGVDIAQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-09-06
Deposition Author(s): Chen, Z. , Gao, X. , Li, W.X. , Zheng, S.N.