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FASTA Sequence PDB Format mmCIF Format
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9I8Y

Spcas12cas12f1 in complex with sgrna and cognate dna

PDB DOI: 10.2210/pdb9i8y/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Syntrophomonas Palmitatica Jcm 14374 , Synthetic Construct

Deposited: 2025-02-06
Deposition Author(s): Baltramonaitis, M. , Karvelis, T. , Sasnauskas, G. , Siksnys, V.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.89 Å

9i8y
Literature

Spcas12cas12f1 in complex with sgrna and cognate dna

Baltramonaitis, M. , Karvelis, T. , Sasnauskas, G. , Siksnys, V.

Primary Citation of Related Structures: 9I8Y


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endodeoxyribonuclease Cas12f1 A 500 Syntrophomonas Palmitatica Jcm 14374 , Synthetic Construct SNAMGESVKAIKLKILDMFLDPECTKQDDNWRKDLSTMSRFCAEAGNMCLRDLYNYFSMPKEDRISSKDLYNAMYHKTKLLHPELPGKVANQIVNHAKDVWKRNAKLIYRNQISMPTYKITTAPIRLQNNIYKLIKNKNKYIIDVQLYSKEYSKDSGKGTHRYFLVAVRDSSTRMIFDRIMSKDHIDSSKSYTQGQLQIKKDHQGKWYCIIPYTFPTHETVLDPDKVMGVDLGVAKAVYWAFNSSYKRGCIDGGEIEHFRKMIRARRVSIQNQIKHSGDARKGHGRKRALKPIETLSEKEKNFRDTINHRYANRIVEAAIKQGCGTIQIENLEGIADTTGSKFLKNWPYYDLQTKIVNKAKEHGITVVAINPQYTSQRCSMCGYIEKTNRSSQAVFECKQCGYGSRTICINCRHVQVSGDVCEECGGIVKKENVNADYNAAKNISTPYIDQIIMEKCLELGIPYRSITCKECGHIQASGNTCEVCGSTNILKPKKIRKAK
CRISPR-associated endodeoxyribonuclease Cas12f1 B 500 Syntrophomonas Palmitatica Jcm 14374 , Synthetic Construct SNAMGESVKAIKLKILDMFLDPECTKQDDNWRKDLSTMSRFCAEAGNMCLRDLYNYFSMPKEDRISSKDLYNAMYHKTKLLHPELPGKVANQIVNHAKDVWKRNAKLIYRNQISMPTYKITTAPIRLQNNIYKLIKNKNKYIIDVQLYSKEYSKDSGKGTHRYFLVAVRDSSTRMIFDRIMSKDHIDSSKSYTQGQLQIKKDHQGKWYCIIPYTFPTHETVLDPDKVMGVDLGVAKAVYWAFNSSYKRGCIDGGEIEHFRKMIRARRVSIQNQIKHSGDARKGHGRKRALKPIETLSEKEKNFRDTINHRYANRIVEAAIKQGCGTIQIENLEGIADTTGSKFLKNWPYYDLQTKIVNKAKEHGITVVAINPQYTSQRCSMCGYIEKTNRSSQAVFECKQCGYGSRTICINCRHVQVSGDVCEECGGIVKKENVNADYNAAKNISTPYIDQIIMEKCLELGIPYRSITCKECGHIQASGNTCEVCGSTNILKPKKIRKAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA target strand c 32 NA GGCGACGTTGGGTCAACTGAAATACGCTACGC
DNA non-target strand d 19 NA GCGTAGCGTATTTCTCAAC
sgRNA (single-guide RNA) e 210 NA GGGAUUUACUCUGUUUCGCGCGCCAGGGCAGUUAGGUGCCCUAAAAGAGCGAAGUGGCCGAAAGGAAAGGCUAACGCUUCUCUAACGCUACGGCGACCUUGGCGAAAUGCCAUCAAUACCACGCGGCCCGAAAGGGUUCGCGCGAAACUGAGUAAUGAAAGUCGCAUCUUGCGUAAGCGCGUGGAUUGAAACAGUUGACCCAACGUCGCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-02-06
Deposition Author(s): Baltramonaitis, M. , Karvelis, T. , Sasnauskas, G. , Siksnys, V.