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8YO7

Structure of phage t6 topoisomerase ii central domain bound with dna and m-amsa

PDB DOI: 10.2210/pdb8yo7/pdb

Classification: ISOMERASE
Organism(s): Enterobacteria Phage T6 , Escherichia Phage T4 , Synthetic Construct

Deposited: 2024-03-12
Deposition Author(s): Chen, Y.T. , Xian, R.Q. , Xin, Y.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.16 Å

Literature

Structure of phage t6 topoisomerase ii central domain bound with dna and m-amsa

Chen, Y.T. , Xian, R.Q. , Xin, Y.H.

Primary Citation of Related Structures: 8YO7


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA topoisomerase medium subunit A 452 Enterobacteria Phage T6 , Escherichia Phage T4 , Synthetic Construct MQLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVLQALQGKKVTKPKVEFPEFRGEVVEIDGQYEIRGTYKFTSRTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRIDNKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLVGMNIFHMTSDEAKKLAEEAKAKKEENEYWKTTDVVTEYTKDLEEIKHHHHHHHHHH
DNA topoisomerase medium subunit B 452 Enterobacteria Phage T6 , Escherichia Phage T4 , Synthetic Construct MQLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYNVYKDTEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVLQALQGKKVTKPKVEFPEFRGEVVEIDGQYEIRGTYKFTSRTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRIDNKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLVGMNIFHMTSDEAKKLAEEAKAKKEENEYWKTTDVVTEYTKDLEEIKHHHHHHHHHH
DNA topoisomerase (ATP-hydrolyzing) C 611 Enterobacteria Phage T6 , Escherichia Phage T4 , Synthetic Construct MIKNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDEGIRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKYARQYDEHAIVQEQENCSIAVGRSPDGFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLTSPFGEIRSHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEKAENLNYHNIAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVIIAHVGKKQEWFYTVAEYESAKDALPKHSIRYIKGLGSLEKSEYREMIQNPVYDVVKLPENWKELFEMLMGDNADLRKEWMSQHHHHHH
DNA topoisomerase (ATP-hydrolyzing) D 611 Enterobacteria Phage T6 , Escherichia Phage T4 , Synthetic Construct MIKNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVKLIDEIIDNSVDEGIRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWETIPGKWKGTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKYARQYDEHAIVQEQENCSIAVGRSPDGFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLTSPFGEIRSHIQLDAKKISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAKVHKHIKANLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYADMLKNKELFDICAITGLVLGEKAENLNYHNIAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVIIAHVGKKQEWFYTVAEYESAKDALPKHSIRYIKGLGSLEKSEYREMIQNPVYDVVKLPENWKELFEMLMGDNADLRKEWMSQHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*TP*AP*TP*AP*CP*AP*CP*AP*TP*AP*T)-3') e 52 NA ATGCATATATATGTATATGTATGTGTGTATATATACACATATATATATATAT
DNA (5'-D(P*AP*TP*AP*TP*AP*CP*AP*CP*AP*TP*AP*T)-3') y 52 NA ATGCATATATATGTATATGTATGTGTGTATATATACACATATATATATATAT
DNA (5'-D(P*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*A)-3') f 52 NA ATATATATATATATGTGTATATATACACACATACATATACATATATATGCAT
DNA (5'-D(P*AP*TP*AP*TP*AP*TP*AP*CP*AP*CP*A)-3') x 52 NA ATATATATATATATGTGTATATATACACACATACATATACATATATATGCAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-12
Deposition Author(s): Chen, Y.T. , Xian, R.Q. , Xin, Y.H.