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FASTA Sequence PDB Format mmCIF Format
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8WQ4

Structural basis of translation inhibition by a valine trna-derived fragment

PDB DOI: 10.2210/pdb8wq4/pdb

Classification: RIBOSOME
Organism(s): Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639

Deposited: 2023-10-11
Deposition Author(s): Wang, Y.H. , Zhou, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.53 Å

8wq4
Literature

Structural basis of translation inhibition by a valine trna-derived fragment

Wang, Y.H. , Zhou, J.

Primary Citation of Related Structures: 8WQ4


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (1328-MER) a16s 1501 NA CGCCCCGAUUCCGGUUGAUCCUGCCGGACCCGACCGCUAUCGGGGUAGGGAUAAGCCAUGGGAGUCUUACACUCCCGGGUAAGGGAGUGUGGCGGACGGCUGAGUAACACGUGGCUAACCUACCCUCGGGACGGGGAUAACCCCGGGAAACUGGGGAUAAUCCCCGAUAGGGAAGGAGUCCUGGAAUGGUUCCUUCCCUAAAGGGCUAUAGGCUAUUUCCCGUUUGUAGCCGCCCGAGGAUGGGGCUACGGCCCAUCAGGCUGUCGGUGGGGUAAAGGCCCACCGAACCUAUAACGGGUAGGGGCCGUGGAAGCGGGAGCCUCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGGGGCGCACCAGGCGCGAAACGUCCCCAAUGCGCGAAAGCGUGAGGGCGCUACCCCGAGUGCCUCCGCAAGGAGGCUUUUCCCCGCUCUAAAAAGGCGGGGGAAUAAGCGGGGGGCAAGUCUGGUGUCAGCCGCCGCGGUAAUACCAGCUCCGCGAGUGGUCGGGGUGAUUACUGGGCCUAAAGCGCCUGUAGCCGGCCCACCAAGUCGCCCCUUAAAGUCCCCGGCUCAACCGGGGAACUGGGGGCGAUACUGGUGGGCUAGGGGGCGGGAGAGGCGGGGGGUACUCCCGGAGUAGGGGCGAAAUCCUUAGAUACCGGGAGGACCACCAGUGGCGGAAGCGCCCCGCUAGAACGCGCCCGACGGUGAGAGGCGAAAGCCGGGGCAGCAAACGGGAUUAGAUACCCCGGUAGUCCCGGCUGUAAACGAUGCGGGCUAGGUGUCGAGUAGGCUUAGAGCCUACUCGGUGCCGCAGGGAAGCCGUUAAGCCCGCCGCCUGGGGAGUACGGUCGCAAGACUGAAACUUAAAGGAAUUGGCGGGGGAGCACCACAAGGGGUGGAACCUGCGGCUCAAUUGGAGUCAACGCCUGGAAUCUUACCGGGGGAGACCGCAGUAUGACGGCCAGGCUAACGACCUUGCCUGACUCGCGGAGAGGAGGUGCAUGGCCGUCGCCAGCUCGUGUUGUGAAAUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCCCACCCCUAGUUGGUAUUCUGGACUCCGGUCCAGAACCACACUAGGGGGACUGCCGGCGUAAGCCGGAGGAAGGAGGGGGCCACGGCAGGUCAGCAUGCCCCGAAACCCGGGCCGCACGCGGGUUACAAUGGCAGGGACAACGGGAUGCUACCUCGAAAGGGGGAGCCAAUCCUUAAACCCUGCCGCAGUUGGGAUCGAGGGCUGAAACCCGCCCUCGUGAACGAGGAAUCCCUAGUAACCGCGGGUCAACAACCCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCGCUCCACCCGAGCGAGAAAGGGGUGAGGUCCCUUGCGAUAAGUGGGGGAUCGAACUCCUUUCCCGCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCAUAU
RNA (26-MER) vtrf 26 NA GGGUUGGUGGUCUAGUCUGGUUAUGA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S12 S12P 143 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 GSKSPKGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP
30S ribosomal protein S15 S15P 149 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 MNKKRAKGNSHSIRPVRSGPPKWVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLVT
30S ribosomal protein S17 S17P 111 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 KKGQLVKNVGIEGVSAPSKTCDDEYCPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIAKSISFVILGVK
30S ribosomal protein S24e S24E 96 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 VSDKVEGIVERDIQNNVANRRELYIKLFHIGSGTPSRKELVKAIASTFSTAEDLVVVKKVFTNYGSGISYARVNVYKDKDSLQKLEPQYLIGRDTG
30S ribosomal protein S27e S27E 59 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 MKAKFKILIPEPKSKFIRVKCRQCNNEQVIFSNATFPVRCLSCGAQIVIPKGGKAKIEG
30S ribosomal protein S3Ae S3AE 189 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 IRDKWKLKKWYVITAPKVFGEALLGSTPAYDINKALSRKIEVTLYDLTGDYNLVYIHLYFKILGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKDGYMLRVKGLVLTTYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPKV
30S ribosomal protein S3 AS3P 201 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 VLIKRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVITKPTRSIDKIELKEKVEKT
30S ribosomal protein S7 AS7P 193 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 ENIEVSNLNVKVFGKWDTKVEVRDPSLKKYIDLMSIYLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIALSSR
30S ribosomal protein S9 AS9P 136 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 QAEQNFMITYARRKSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKFTNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR
30S ribosomal protein S10 S10P 100 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 TKARIRLWSSNIDSLNFVVNQIRNMAQKTGIQVSGPIPLPTTRMEVPVMRLPHGEGKKKWEHWEMKVHKRIIDIAADERVMRQLMRVRVPDDVYIEIELI
30S ribosomal protein S13 S13P 147 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 QQQFKYIVRLFGQDVDGTMKLPYALAMIKGIGYNTAMIIIRKLNLDKDKRLGEISDEDIKKIENLLNNKIIPESPNWIYNRQKDYESGADMHLVTSDLIFYVRNDIERERRSRSWRGVRHSLGLKVRGQRTRTTGRTGATIGVRRAK
30S ribosomal protein S14 type Z S14P 52 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 KYKPPAERRFGKGVQLCKRCGSRDSVIQKYGLYLCRQCFREVAYPMGFRKTR
30S ribosomal protein S17e S17E 62 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 GNVYTKDIKRVARELYDKFKDQASDKYDDNKKLVDEYVNVSSKKVKNRIAGYLTRYVKISKN
30S ribosomal protein S19e S19E 150 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 TVQMVPADILIPKLAEYLKNNVKELNPPNWVYFAKTASFKERVPDDIENWWYIRAASLLRHLYIYKEPIGLQKTRKLYSGSKRRGTKPPRSVKAPTHSIRTILQQLEKAGLVTKTRRGRILSPKGRSLLDKLAYEMFKELAEKKQDLKKY
30S ribosomal protein S19 S19P 115 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 WKKFRYRGKSLEDLLNMPMDEFIKLLPSRQRRSLKRGFSDKQRRLLEKIRKISREGKQNKVIKTHVRNMVILPEMVGLRFAVYNGKEFVEFQVVPEMIGRYLGEYSITTKKVEHG
30S ribosomal protein S27ae S27A 54 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 QSKAVVRTYYEVEQDSIKLKNKKCPRCGSIMAHHMKPLERWACGKCGYTEFIGK
30S ribosomal protein S28e S28E 63 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 GFPAEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRLGDILILRETEREARKLS
50S ribosomal protein L7Ae SL7A 123 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 PSYVKFEVPQELADKVLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEACGLQVAAASVALMDPGEAKDLVDEIVKRVNEIKGKSS
Small ribosomal subunit protein uS8 AS8P 130 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 INPLANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY
30S ribosomal protein S2 AS2P 196 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 ELLVPLDTYLSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFISRFRPEAVLTVASRPYAFTPVQKFSEVVRGKEISGRFPPGTLTNPYLDNYIEPEVLIVTDPRTDLQAIKEASKVGIPIVAFTDTDARVDFIDVIIPANNKGRKSLALLYWVLARQILRERKEIPLDGDIPLRVEDFETRL
30S ribosomal protein S4e AS4E 240 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 VHITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGENEADSNLG
30S ribosomal protein S4 AS4P 166 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 DPRKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIREKQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ
30S ribosomal protein S5 AS5P 204 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLPKLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDWGRMK
30S ribosomal protein S6e AS6E 105 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 ALAYRTRAFQLSLDQSKLPNLVGTKIGDVIDINVSGVNLKLKITGGSDNSGFSMRFDVGGGAKRKILVSGPPGYYPKEDGLRRKRTVRGNMITPEIVQINTIMIR
30S ribosomal protein S8e AS8E 126 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 SYYQGNDSRKITGGQKGKNRDKRKYELGSPPTETKISDKDIKEKDRVAGGNFKLRLRYASYANVYDPQSKTAKKVKIISVLESPANREYARRGIIVKGTLIQTELGKAKVTSRPGQDGIINALLLR
30S ribosomal protein S11 S11P 128 Haloferax Volcanii , Sulfolobus Acidocaldarius Dsm 639 REIRWGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDTIRRPGGRRGRRV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-10-11
Deposition Author(s): Wang, Y.H. , Zhou, J.