PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8VLR

Cryo-em structure of native h2ak119bu nucleosome at 2.6

PDB DOI: 10.2210/pdb8vlr/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Salmonella Enterica

Deposited: 2024-01-12
Deposition Author(s): Wang, Y. , Zhang, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Literature

Cryo-em structure of native h2ak119bu nucleosome at 2.6

Wang, Y. , Zhang, K.

Primary Citation of Related Structures: 8VLR


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 98 Salmonella Enterica PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 98 Salmonella Enterica PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 84 Salmonella Enterica RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 84 Salmonella Enterica RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 108 Salmonella Enterica RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2A type 1-B/E G 108 Salmonella Enterica RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 1-A D 93 Salmonella Enterica TRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Histone H2B type 1-A H 93 Salmonella Enterica TRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (136-MER) k 136 NA TCTCTGCCTGTTCTTCCAAAAGTGTATTTAGAAACTGCTCCAACAAAAGGCAGGTTCAGCTGAATTCAGCTGAACCTGCCTTTTGATGGAGCAGTTACCAAATACACTTTTGGTAGAATCTGGTGCTCCATTATGA
DNA (136-MER) l 136 NA TCATAATGGAGCACCAGATTCTACCAAAAGTGTATTTGGTAACTGCTCCATCAAAAGGCAGGTTCAGCTGAATTCAGCTGAACCTGCCTTTTGTTGGAGCAGTTTCTAAATACACTTTTGGAAGAACAGGCAGAGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-01-12
Deposition Author(s): Wang, Y. , Zhang, K.