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8SVD

Structure of m. baixiangningiae darr-dna complex reveals novel dimer-of-dimers dna binding

PDB DOI: 10.2210/pdb8svd/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Mycolicibacterium Baixiangningiae , Synthetic Construct

Deposited: 2023-05-16
Deposition Author(s): Schumacher, M.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.49 Å

Literature

Structure of m. baixiangningiae darr-dna complex reveals novel dimer-of-dimers dna binding

Schumacher, M.A.

Primary Citation of Related Structures: 8SVD


Proteins
Molecule Chains Sequence Length Organism Sequence
DarR A 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR F 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR G 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR T 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR E 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR I 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR J 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD
DarR K 209 Mycolicibacterium Baixiangningiae , Synthetic Construct GSHMSASAELEPDVKGRILDAAADAFMARGFANTTIDDIADEVGATKGLIYYHFRSKFDIFLAVYEDGMRRVRERVEPHSTAPGTGHQRLEAMSIAHLENLMTELGYHHVVHQGVRHQDSTALKVRQRDALTALNELRRDYERMFRRVIAEGIADGSLRRVDEALATRTLLSNLNAVDVWYRKIEGQTGEEIRELASQVVDMLIGGLAD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3') d 20 NA TAGATACTCCGGAGTATCTA
DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3') b 20 NA TAGATACTCCGGAGTATCTA
DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3') m 20 NA TAGATACTCCGGAGTATCTA
DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3') q 20 NA TAGATACTCCGGAGTATCTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-05-16
Deposition Author(s): Schumacher, M.A.