8IUJ
Cryo-em structure of euglena gracilis super-complex iii2+iv2, composite
PDB DOI: 10.2210/pdb8iuj/pdb
Classification: ELECTRON TRANSPORT Organism(s): Euglena Gracilis
Deposited: 2023-03-24 Deposition Author(s): He, Z.X. , Hu, Y.Q. , Tian, H.T. , Wu, M.C. , Zhou, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.06 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| MPP-beta | QA | 479 | Euglena Gracilis | MTTPSLSSILRHTRPIFKETLRAARPTLQNALPNGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGAVDHGQLCDLASKYFGALPTGQPKPSGFTRFLGGDKRETNQLNPLTHVAVAFQTPGISHPDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIVMDFYDPKVGQFFRPNKAGHNPIHSLNAFWAPYSDVGLLGFYAIAEPGKSYGHEWENILHYAMRELIRVSRNISEEEFERAKNQLKLQTMLQLDGTTNIADDIGRQVLSFGARVPLASFFEQLDAISREDLIRVAHEYFYDKDPVVAVIGDTDNVPEYDALRAVTYSVDLGRA |
| COXEG8 | 4H | 221 | Euglena Gracilis | MLRVLTPAIARPGLRCFFKDGFRDNASLELVYRVVLKSPAVSQKLIEFYAKSLDQLSVESLSALKGTTVGIPLQPYLGDPHRVLLAYSLLPHTVETEADGNPVVETKIGDEEQKIKIIDSEVISFLAKEILGKLGLETTPQAARQYLDSLVEGAEALYAKIAPVEPSPLEKAIAEINEEIKSGTPWDTLKNRADPKELHALKFAQLPHPITKKVEGKFKYF |
| COXEG10 | 4J | 88 | Euglena Gracilis | MNHERPWVFLNKVTGKWGACGWQPFWKATSQSLNYIPDNFIALRTNGSWVRNLWQSSKVLDRGLNASGYPTVGTTDWVRIPLDAPLEA |
| COX5c | 5C | 208 | Euglena Gracilis | YFFSRARMSLQLGHMRVGALWQSNANSRGLPNLLKEVMAAEPIYPYTHPGLSAKQILWNTKFNLKLEKDLISIAESAVQSQTVNKVVIPTMLTGDVNPKSPASVVAKDKYQLAKQMAEFQYKKSYFEKPWGYMFAYYCDEDRARLCGGIGYVGHHGGGDAEILSYTEYVSTVVYPTIFYMAITFVVSLFLMYYYIYGTFFSSTRNRFD |
| COX6a | 6A | 112 | Euglena Gracilis | MSTNKNVFFPPALHLKENSIFQYKFKNLAVRHDAARLGIILAGPTLFYWFTVYYFKGMPNGLPPVLLNPFVNRNYRGQKRDMPWGTDCAFLDTKCHEEKDTWAKRGPFFIIA |
| COX6b-1 | 6B | 287 | Euglena Gracilis | MEGFVDKIDDNKYLGKWETILTDGRTHLPKHITFHDAAAISARWNQQYVNDSGPVYYRHWLACQQTYGAGNEDCRKLRWWAQQITHPLHLAEWDDWWKDEHYDLQIGQHWNRICGEEFEEASNLLKDLKEKREGLAAKFRDLLKTKTAEDPMGKILHEVAQLEEPSKTPVADLVEAGTLSKEAVEAAAALKIKELKALRDDATWAEVKGSLLNGVTTTCSTLKKTSKVVAELKAQAELERNKTSAVKLDIPHMRVNYEKPGLYEYDTWFGKFLPRTPQFGFAESDEE |
| COX7c | 7C | 171 | Euglena Gracilis | MQKAVVGNLLRQLSLTRPRGHGSNLYNRVHGNLPQLYVEQLYNTDEILDTVPHSSDPVHHMFPKCAAASPLGFRPYDNNKLWDAFVLWAIVYGVTTIFCVLHILKYPQIWKHLFETLTFQYTYQREIGEEYVWQYGGGGLNPAKWRFVKSPLEELGLVTEYRSDLDYPDDL |
| Cytochrome c oxidase subunit 1 | C1 | 495 | Euglena Gracilis | MINNIMHMINKYTLTTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIGDPVLYQHLFWFFGHPEVYVIILPVFGLTSLILTSIIHKDIFGREGMMYCIISIGVVGYFVWAHHMFTVGLDIDSRSYFSIATSIISIPTSVKMFSYINTWASGRGFRGNNSSWSFFSFLICFCFGGFTGLLLSSGSLDIMLHDTYFVVGHFHTVLSLAATFGLLIAHYFFLPIIFSYSIFESFSFYHTFLLLVGALLVFYPMHLAGLSGMARRVPEYADIFIPFMTVGFHGTFLLIFSTLTFIRSYFQFLSHINHSNYL |
| Cytochrome c oxidase subunit 2 | C2 | 196 | Euglena Gracilis | MRYGNREIESIILFFDQTIILYTSIINALIVGIIIIIRKWYNRKGICNQYIYHIKIEVIWTILPIIFLIVIVLHSVTVIYNLEINKGTNNKYINVIGNQWYWIYNNIESRISSLGRIILVDQPLFIKANNNTHLIISSLDVIHSFALPTLGIKVDAIPGRINNISINGLTQGLYVGYCSELCGSGHAFMPINLIVY |
| Putative NADH dehydrogenase subunit 6 | C3 | 161 | Euglena Gracilis | MILNTNINYGGRNSRLCYLIPLMVHTIFLYLAYLIYYNINLINIYLLLIIIIFINIEWPLVIIYEYIYLTNYNIQNNLLYNIATFIFLEILLFIGFYWLYINNIIHYPNNLPYNNNIAVNLLDHLNHNNNTDICLYIILHNLLLLLYVTLILQLVHRYVQL |
| COX4 | DC | 179 | Euglena Gracilis | MGGDAHAHGGHGLHADPIFNGSKVVRSIQMMRSYHRLPVGPEPPHLKIRGAPLHPWSMYTDKGGFFFGVGTQLPRNFFPKFLATTSAIMGVTYGLVWLYNAAGPRAKTQTRKWKELESEDPRFPFQEIPEIYLPSDIDRDPNADCWRILNQVPRKEKLLVEITDPLRNFDFKVAKIKEN |
| Cytochrome b | QC | 368 | Euglena Gracilis | MNKISLYRSYSTTILLSPAYSLGFCASIFIVIQIISGYILASNYIASTNESFNIIHNVIMRELDTGWLIRFNHINGCAFLFIVIYMHIYRSLYHNSITKTSVWIVGIIMYILICGIAFTGYSLVYGQMSLWAIVVICSLVTAIPFIGNKLLILIWGGNIVSSVTLQRIFCIHYLLPLLLILFIIIHLYNLHNVNSTGDNYFINNRYDRINFYPLLLIRDVFIGSNILIIYNIFVYYYSDLFGHPDNYVPANPLVTPSEIMPEFYLLPFYALIRAIPHKVLGIIIMVLFLLSLTNLYPIYFIRFYNNINILQRSLLLLLLLDLVIASKLCLLINHYESFYLLLILSILCVLSHHIYNTSFNFSNSISNL |
| UQCRFS1 | QE | 252 | Euglena Gracilis | MFKQLSRMYSTSPAVANAVGGLATSQIRDLVGNPAKSGKPVVKMPPYLKPSQLRPSRGAYSDEFVRENYIKAADPEDPYNYRSRAFTYAAKIPMWAGLLAGTRVTVVYLMSQFMPSKSSLALANIEVDIGDIPEGKTVTIMWQGKPVFLRKRTDAEIEDMRAVPMDALKDPQTDEERLGEGRWAVFMAVCTHLGCVPVIDQGSYNAYFCPCHGSHYDHSGRIRKGPAPLNLEVPPFKLLDDSTLFIGNADAA |
| UQCRH | QF | 72 | Euglena Gracilis | GKMAAEQVSVSELKLKFEEECAHHHCHDIVKKVEVCEESIKGKEGKNCLFQHARLWECVDHCASPKVFALLK |
| UQCRB | QG | 228 | Euglena Gracilis | MNDAPILAKLGLSKVNTYYFQRRKHIFALPITIPNFPLAALGIFRSTDMFEERTLERYSRDEREKTLGKAALLLKEAKEKGNYSELVRLDPTDPRHPYYFEHPWQSALKMDTVSLTPYQQYLRWHCLTYRAMHEWDRQGLLYDDLMQPKALATDPFLEEAILRLPYNQRVERERRLSRAYDLALRREYLPDEDCIHPEDDVAYLHPYYHMVVDEHREQHENPVDVYSR |
| UQCR9 | QI | 70 | Euglena Gracilis | MLANFSRFFYKTFLQSNATLIPLTLVFTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial | QB | 474 | Euglena Gracilis | MKSVVRSKGTQALFRRFSSALGDSINPNQVGVGDNVIRVNGRLFEVDKVQEKGLKTSVLDNGTKVITLDNGGSVAQLTFLYKDGPVYENIFNAGISSFMKHALTKDGLTSSEYITKTFLQKAGIIVHEPTVVNKSAIAFTVEGFRDTLAQPAVADKFWQSLLFPRFSPENVKEVKRLVELESKETKRDSPFAYLQDILHKTAFKGSPLGHTSFVPAYNLGYIDSNKLFDRWDAHYGFGNIAVIATNIEHEAVLAAITDSAWVARAHNKVGGVAAPASKYSGGEGYDVVHRAKEFDDQFTDVYSTYTAYAFKAPGRSNLKEHAASLVIAQALSNAVSPVLNTSFAPKRLEVFYQAYDTVGLIGLSSVQASNAQLKAFKAALSKIGTLSEADLAVHKSAALLTAYGNVESWRATQATLIDSFNTTGQPLSPLEIVSAIKAVSADTVKSVVATMLGSPATLVHHGDSPCAPTLDALQ |
| COX5b-2 | 5B | 174 | Euglena Gracilis | MFRRGLVLAASRSKSLLDSVHVFRPEFAQGKFRIDLDQPAKQNKLQQQIYTLTDDEREMYEDEPYIGVDHLYEAHKGSKENPVVVEAIGVHGNDVFTGCLGGCHKDAADAVAYYTIVPPNTLAVCIDCGIHFVARINEQLTFWPDGTQPWEKVDFKAVEGFLYKHYKYGSPLMI |
| COXEG4 | 4D | 174 | Euglena Gracilis | MSTVLSILGKRFQRSALTPKMNPFIRIRCQGPIEEFQRGFIGEFHAFALPGACMLVASCLGTFHIIRCLVVNPELSLAKVIPEILQPFTNPNAQLKAADGKDDDDSQVPKQWGMWGRHPNYGVLHVPFLDALNKEALARGKDGVNMGAEYNLVFTKSMADQVVDLILDDVQKRV |
| COXEG6 | 4F | 75 | Euglena Gracilis | VFPSITKPLGLFKNLPRQHRAARDASIWLAILTAGPFGIFIAFKYYADWYDKKLLMEYYKDSIVYGETYGKGKYV |
| COXEG7 | 4G | 315 | Euglena Gracilis | MLRQVVRRSNPLRMQVRGSAWNFQELMESRIPDYKGRPNRSGAELEQVKAALPKIEFMTSYEFDVLTKTRSNLTKEYSYQRDMRLKVTELMLDEAPHELEGLAVEGDAALKQLAELKALQTLTEYAGDLLEGQNQIVQRVNDFVDSNPVYLLDQPLREEARWNLLPEMDHKTRSLVRTELRDWLPAEYRQTRAVDLQQVAAFSPPVKADMFRAIEARAKDAEAEIRSLPPAEQAGLLALVKDNVAKSKAFIDPTYDITPEAINACNDVDALRAMAHRVTEYSGDARLLAIYGKAAQLTGDTAAQAILKEAKDLVF |
| COXEG9 | 4I | 274 | Euglena Gracilis | MMNKGRILLGTNPGDIALNSKRFTVGKFVAWACGGWGLKDWIFPSLFIGRGDGPDFDRIVKHTLQSSSAIEKVNWFDSPFACYTEWFVEHFPGFFDSRYRFEMSAKTILANKYPIKDFPVVDMRSWRSSRLFDLFEVPHPEHTFVFGGPVLLNTEAKRAERLEQEWHGKDGTFVDVHPLNVATESHTEVSVIGGIKVYNGVWQGGKDSWKRDSAKPELTAPFHSPIWYRNMFIVKNADQLVEHFGENLSDETWQEVRKEHLAFHERFHKDYSFA |
| Cytochrome c1, heme protein | QD | 243 | Euglena Gracilis | GVDSHPPALPWPHFQWFQGLDWRSVRRGKEVYEQVFAPCHSLSFIKYRHFEAFMSKEEVKNMAASFEVDDDPDEKGEARKRPGKRFDTVVQPYKNEQEARYANNGALPPDLSVITNARHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAFRPFNYSK |
| COX7a | 7A | 178 | Euglena Gracilis | MLSRLLHGPGSDKGHGYFHPDHGLVDSAAQNIRGPYWHAENMQFMQQTTQSGEKLPVPLTETAAQSSKLPVLSAQDGKTLQKIQLTDGSKVPKAATLVKWNPKSVHQWHSDDILRVDMTKHPEWVRTMRMFHGTVWRHRPEFRHPWFSRGSRASGIIMLVFGAVAYGEITFGKRLGGV |
| UQCRQ | QH | 86 | Euglena Gracilis | MEGHSAYVALEQRVNTRQKGIIQRHLSPYDVDIRGNGFRQIYRLGMQKIRYFGLIGTPCLLVAGAYRGIWVFCERLEDERYWSNAL |
| UQCR10 | QJ | 154 | Euglena Gracilis | MALEIKREWHVVPATKKFADVPTEWPAKEHERFALPYGPSEGRIVSFMRASRIRNRLLFTLNPTGYTEDTYVTKEALRRQALAESKNLWYLPERPVVADQLETIVNRSTFFVVKGHKNKGLIGIAGARHNPLVWLPTLALGGVWAWRWASAGTI |
| Ubiquinol-cytochrome-C reductase complex subunit IX, mitochondrial | QK | 100 | Euglena Gracilis | MQTHVRRVALQALRPCLRAGLMAPKFPVRFATTAVSGELLTKTPYTRPGYAAQWTCLVVLFLKNQLLMRLFFAFVAYVVAMKVFGARFHVDHDEDATPAE |
| COXEG1 | 4A | 246 | Euglena Gracilis | MLSRALCSRNVPMSLKALNRPGSAGKLPMQLMKYASAVAPISHEGTLVRISQVKKLSELQLHFNDSHLGESELAAKVLGKLRKLEAEVLARNQAFNEAHPLVFDPKRAFNDEIFLCCSLCCIIFLIFLFNQYEEFAHELSFDIREQFGLGFYMLLGLHGSHVIFGTIMLALLTLWGAQGSVGPQSHALRFTSLYVHLVDLVFIILVLAIYSANASPELYGGIVPNILEARTFVSVDAAGNPQIKEF |
| COXEG3 | 4C | 139 | Euglena Gracilis | MMQRIPFKKPNQIRGYFTRVHKYNHVPVPFILNVGMSISIVTSFVYFTYTSLWVRPEYDRVVDPSKAYVNPVWVDYWLKLRDEKRIQGALERSILEEEPEKAAEKILEWARTSAQNKILEDLKLLKPALSPATIAQFEK |
| COXEG5 | 4E | 165 | Euglena Gracilis | MPSSMAWTIGWGFYAAWIMKETWNLRSSSVGWTPITLMEAYKTKERYLRSKAMMERYNSELEAVDDSNITEEDAKKFELEKATPSISIWEQFRSNPYWKEVEEEISTDVRKTMLEKHPDYALLLEAVKKSGYSKLWHLPGPWMNEHYNDGLHGRFLGWTPKAAHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-03-24 Deposition Author(s): He, Z.X. , Hu, Y.Q. , Tian, H.T. , Wu, M.C. , Zhou, L.