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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8FYC

Cryo-em structure of cas1:cas2-deddh:half-site integration complex linear crispr repeat conformation

PDB DOI: 10.2210/pdb8fyc/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Megasphaera , Synthetic Construct

Deposited: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

8fyc
Literature

Cryo-em structure of cas1:cas2-deddh:half-site integration complex linear crispr repeat conformation

Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.

Primary Citation of Related Structures: 8FYC


Proteins
Molecule Chains Sequence Length Organism Sequence
DEDDh K 164 Megasphaera , Synthetic Construct IRYVVIDIETDGKDAKRNHILEIGAIRCEDGKETHFTALISGDAVPPSITKLTGITATLLQKEGQEEKKVLTAFREFIGDDDLVGYHVSFDIEFLRQAFKKYGLGYLKNKTHDLLRIVKKEQLFQADYKLETSLQSYGIHKKVPHRALGDAELVKCLAKKLNKF
Cas2-DEDDh D 93 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKE
Cas2-DEDDh A 93 Megasphaera , Synthetic Construct MPMTVITLKNVPQSLRGDLTRWMQEIATGVYVGNFNSRIREYLWRRVQETMGAGEASMCFAARNELGYDFLTENASRSVIDYDGLPLIFIPKE
Cas1 B 311 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSE
Cas1 C 311 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSE
Cas1 E 311 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSE
Cas1 F 311 Megasphaera , Synthetic Construct MAGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTALVWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKKYNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAVAAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (43-MER) j 78 NA TGCGCGTGGGATCACCCCCGCTCGTGCGGGAAAGACAGTAATGGATTCCTTTATTTTCGCCCTTTTACGCTTACTGAC
DNA (57-MER) g 57 NA AGATTGAGACCAGGTCTCCGTTTCATGAGTCTTTCCCGCACGAGCGGGGGTGATCCC
DNA (31-MER) h 31 NA AAACGGAGACCTGGTCTCAATCTGCGTGTTC
DNA (14-MER) i 44 NA ACGTCAGTAAGCGTAAAAGGGCGAAAATAAAGGAATCCATTACT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-01-25
Deposition Author(s): Doudna, J. , Skopintsev, P. , Soczek, K.M. , Tuck, O.T.