8FRU
60s subunit of the giardia lamblia 80s ribosome
PDB DOI: 10.2210/pdb8fru/pdb
Classification: RIBOSOME Organism(s): Giardia Intestinalis Assemblage A
Deposited: 2023-01-08 Deposition Author(s): Bilodeau, D.Y. , Eiler, D.R. , Kieft, J.S. , Rissland, O.S. , Wimberly, B.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.49 Å
60s subunit of the giardia lamblia 80s ribosome
Bilodeau, D.Y. , Eiler, D.R. , Kieft, J.S. , Rissland, O.S. , Wimberly, B.T.
Primary Citation of Related Structures: 8FRU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 60S ribosomal protein eL29 | B | 62 | Giardia Intestinalis Assemblage A | MAKLKNHTSKNQNRKDHRNGIKKPKKSAYTSHKGMCPKYLRNLRRSRANDPRQSLRPNLNKE |
| 60S ribosomal protein eL42 | O | 106 | Giardia Intestinalis Assemblage A | MVTYPAERRTFCKREGKHTVHKASLYKKGKDSLLAQGKRRYDRKQRGFGGQTKPIFRRKAKTTKKQVIRLTCSSCKCQTFQVLKRCHRLEISRLGATKKSKGSVVF |
| 60S ribosomal protein eL39 | L | 51 | Giardia Intestinalis Assemblage A | MSANKTLERKLRLGKKIRMNKNIPRWVILKDKLKKRWNYKRHHWRRSHLKL |
| 60S ribosomal protein eL40 | M | 127 | Giardia Intestinalis Assemblage A | MQLIVRSLDRTVALTASPADSLTSIRQRLLAVYSGHVVDSQRFVFAGRTLDEAKTLGDYSIGESSVLDLVPRLFGGVMEPTLINLAREYNQNMMICRHCYARNPLRATNCRRCRGTNLRKKKLSKYA |
| 60S ribosomal protein eL41 | N | 25 | Giardia Intestinalis Assemblage A | XXXXXXXXXXXXXXXXXXXXXXXXX |
| 60S ribosomal protein eL18 | Q | 179 | Giardia Intestinalis Assemblage A | MGIDLKTGIKKRKVERKEPKSPNPYIRLLHNAFKVVYENTGEDFTKVLTKRLCLSKTNRPVLSVSRLAHLMHKREDKIAVVASTVTNDERLVTIPRMTICALKFSATARSRIEKAGGRCMSFDELLAEKPTGDNCVLLQGRRSCRAVCKKFGSPGRPNSHVKPKGEHKGRRGARGRHSW |
| 60S ribosomal protein eL20 | S | 205 | Giardia Intestinalis Assemblage A | MDAWTVLLFYQVLKQFQSEFVDALKSRAETRGMMQKYIVYGRRLPSEKFPEPEVFRMTIYAPNEIVAKSRFWYHLKSLKKIKRTHGEILDCQHIEENGDFVKNFGVLLRYRSRVGQHNMYREVRETTSARAMDKVYSEMAGQCRARYHDIQIINVKEVADEDVRREKVAMFTQKGVRFPHPCPYVHVKRAARTARFQDRAPHVPQ |
| 60S ribosomal protein eL19 | R | 196 | Giardia Intestinalis Assemblage A | MANLRLQKRLAADVLKCGKRRVRFNPAHEKYIEQASSREAIRSLIESKIIAKLDIKGSSRGRIRARHAAKRLGRHSGHGKRRGTREARMPSKTLWIQRQRVLRRLLSRYRDDEKIDRHLYETLYAKAKGNMFKNKRVLLEHIVGMQKEQELEKKKKEELEQRRKKAEQRCKERAEKVAANRLAFAQTGIFTEKTNK |
| 60S ribosomal protein eL21 | T | 159 | Giardia Intestinalis Assemblage A | MTHSQGYRCKTRYCFARKFRRHGMANLTTYNRVYKLGQYVNIKVNGAYHKGMPHRYYNGRTGTIFNIGPRALGVQIQKRVRGRIMLKRINVRLEHVHPSDCRKNHLERVAANDAARRLAKETGQPVPCLKRQNALPRAAHVVSIASAIDITPLKYDGVF |
| 60S ribosomal protein uL14 | V | 142 | Giardia Intestinalis Assemblage A | MASKRGRSGGIGNKFRISCGLPVGAVINCADNSGAKSLNMIAVKNWKGHLNRFPKASVGDMVLITVGRDGKPELRRKVTPAVVVRQRKVWRRKDGVWIYFQDNAGVIINPKGELKGSSITGPVAKEAADRWPKISTTAECVH |
| 60S ribosomal protein eL43 | P | 94 | Giardia Intestinalis Assemblage A | MAKRTKKVGLTGKYGTRYGRAARKQLLKIETSQKAKYTCPFCAKDKVRRTACGIWTCRSCSKTMAGGAYSLHTEPANAARATIRRLRLAREDAQ |
| 60S ribosomal protein uL2 | A | 251 | Giardia Intestinalis Assemblage A | MGRRIRVQRKGAGSVFRAHVARRLGAAKLRANDFAERTGSVRGVVKAILHDRGRGAPLARVQFPNMRGEGRVNELFIAPEGMYTGQEVFSGNKATLHIGNILPVGNIPEGTYVCNVEEKPMDRGCLARASGTYCLVVAHNMETNKTRIRLPSGQKKLISSKARAMIGLVAGGGRTDKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVDHPHGGGNHQHIGVSSCVPRNAVPGQKVGLIAARRTGCSGGKRR |
| 60S ribosomal protein uL23 | X | 141 | Giardia Intestinalis Assemblage A | MSEKAQALKAQKAILHGTRVEAKKIRTNVHFFRPKTLVHKKAPLYPRNPIKKGSWDDPCDLLRYPIKTDENTTQIEKNNTIVFIVDRRASKPEIRKAFETVFETKVARVNTLITPLGLKKAFIRLAPDVQAMDVASKMGLA |
| 60S ribosomal protein uL24 | Y | 135 | Giardia Intestinalis Assemblage A | MKLNSAVTASRRKCRKAYFTANAETRAKMMSSRLSKELRAEHKIKTMPIRRGDIVEIFTGGHKGTGKVVEVRRRDYKICVEGINQKARNPEAKPVPYPIHPSNCIIKELYMNGSRYRAIKRRQERNAERLARIGK |
| 60S ribosomal protein eL24 | W | 102 | Giardia Intestinalis Assemblage A | MVTTNQCSYSGRKILPGYGKRMSRHDKVLLIFLNRKASVHYLNKWNPRKIRWTLASRRARGKEVIVKARERVTRKAVVSKRNFLSIDDSKLEALKSKYSRVN |
| 60S ribosomal protein eL27 | Z | 135 | Giardia Intestinalis Assemblage A | MSQPIIKPGLVCIVLQGRHAGKKAVIVEALPHNERGSYAIVAGIAALPRRITNSMSDEEAVCRGRVRSFVKCMNVNHLMPTSCRLENNYKDFISTQTVADVTKRREIIETVNKDFQRRILEHRDTWFFTKLPIDA |
| 60S ribosomal protein uL6 | H | 185 | Giardia Intestinalis Assemblage A | MPLCSSMTIKVPTDVECTINKRVVTVKGKKGTLVRDFSHAPLDITHANDTISVAVWFPRGKRNALPRTICSHIENMFKGVTYGFEYKMRLAYAHFPIAATVVDNNKAIEIRNFMHQIKTRRIECLPGVTIAMSTNVKDELILRGISIEDVSHTAARIHESLKVPNKDLRKFLDGCYVSSRGLQEQ |
| 60S ribosomal protein eL33 | F | 123 | Giardia Intestinalis Assemblage A | MEEIKGKTFLPAIFVGYQRSRAKQRENVALVKVSGIYTRAETDKVLGRLIAIIHSKSGKPIFGKICRPHGNSGMVRARFYTNLPGQLMGHKVRVFYDNIDVGDRATPKYERLYGNPNATVTYE |
| 60S ribosomal protein uL18 | D | 297 | Giardia Intestinalis Assemblage A | MGWVKVQKTRSYFKRFQVQFRRRREGKTDYQARKALIIQDKNKYATPRYRFVVRRTNKDIICQVTAAELTKDRVVCAAYSHELPRYGIPVGLTNYAAAYATGLLCGRRLLEKLSVGIKENALAQLYPGLDKATGEEYHPDENENEEVHAFKAFLDIGLARASTGARVFAAMKGAVDAGLNIPHSMKRFPGYSKDGFDSSALRDRIMGKHVGDYMAELKAEDEETYRKRFSKYIAAKVEPLRLEAMYTKAHAAIRANPQAVKAKFEIKKPVRQARLTLKERKERIDAKKLEALKQLTK |
| 60S ribosomal protein eL32 | E | 136 | Giardia Intestinalis Assemblage A | MAGEMIHPLPHKIIIKKRKNKFIRFQSERFVRVKPSWRKPRGIDSPMRHQYRGQRPMVSIGYGSDKETRFMLPCGFFKHRISTVHELKTLFMNNKTHAAQIAHGVSARSRKQILEEAKKMGVRVLNADAKLRKEEL |
| 60S ribosomal protein eL8 | G | 225 | Giardia Intestinalis Assemblage A | MSKVSGSDIKRALAVPENKSRSKCDFDLTPFVRWPRQVRIQRQKAVLQRRLKVPPTVNQFMNPISRNLTNEIFNLARKYSPESKEEHKARLLQIADAKANGKPLPEKSDKLVIASGIRRITSLVESKRAKLVLIANDVDPLELVLWLPTLCHKMGVPYAIVRTKGDLGKLVHLKKTTSVCFTDVNPEDKPTFDKILAAVAHEVDYAKAMKTYGGGVRREDEAQQM |
| 60S ribosomal protein eL30 | C | 109 | Giardia Intestinalis Assemblage A | MSTKVATKKAQDSISLTLTLVVKSGKYTLGTDQAIRNIRDGKAQLVFMANNCPPLVKSQVDYLCHLSKTPVRVFAGSSRELGIAVGRQFNVSIMTILEAGDADLTSILG |
| 60S ribosomal protein uL16 | I | 210 | Giardia Intestinalis Assemblage A | MGRRPARCYRYQKNKPYPKSRFCRGVPDPKIRYFDLGNRRAKVNDFPYCFHLLSGEKEQVSSEALEACRIACNKYIAKKAGKDSFHLRIRVHPFHVIRINKMLSCAGADRLQTGMRGAWGKPQGTVARVSIGQPLLSVRCRASAKDYVKDALRRAKFKIPGRQAIVESRNWGFTEFTKEEYEDLRERGELQYDGNNAHRISRKGPLNLKL |
| 60S ribosomal protein eL38 | K | 77 | Giardia Intestinalis Assemblage A | MPNTITEENLMKMIADGRGKKLVVKSCSKGRLQGKVKLKLRTAKYLYTLTVPNADDAKSIVKGCKDKVEVQYVNDSE |
| 60S ribosomal protein eL22 | U | 171 | Giardia Intestinalis Assemblage A | MEGQWILFPDQIVNHLCRHADHRLQARVSSKSNLKSNYAYYFSPSSEMRPRIKKCVKKEQGNIRFAVDCSAGKDLELNLNEFADYVRTHFKINNRKHGVAEKVACSVEGDSLVIQTTGYEFAKRYVKYLTKRFLYQDYQGVFRVLSTDKETYTLKPYTIEDDDDEAGTDDE |
| 60S ribosomal protein uL5 | J | 173 | Giardia Intestinalis Assemblage A | MSQESENPMRRIRIEKLVLNICIGGEGDALTKAAKVLQQLTDQEPTFSKSRLTIRGFGIRRGQKISTHVTVRGEKAREIIERGLRVKNFELPYSCFSTTGNFGFGITEHIDLGIKYDPSMGIYGMDFYVVLSRPGFRVNKRRAQQQHVGASHKITPDEARAWVEREFEVVYTK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5S rRNA | 3 | 120 | NA | CAGUUCGGCCAUCCUACGGCGGAAACUCCUUAACUCGUUCCGAAUUAAGAAGAGAAGCGCCGUCAGGCCCCGCCAGUACUGCGAUCGGAGACGUCGUGGGAACACGGGGUGCCGAACUUU |
| 5.8S rRNA | 4 | 141 | NA | AACGCCCCGCCGGCGGAUGCCUCGGCCCGGGCGGCGACGAAGAGCGCGGCGGAGCGCGAGACGCGGUGCGGACCCGCCCGCCCCGAGAAGCACCGGCCCUCGAACGCAGCGCGCCCCGGCGCCGCCGCCUCGGUGCCCUGC |
| 28S rRNA | 1 | 2687 | NA | CGCGGCCCGAGGCGGCGGGGGCGACGGGCGGAACUUAAGCAUAUCAGUACGCCCCGGAGGAGAAACCAACCGGGAUUCCCCGUAGCGGCGAGCGACGCGGGAGGAGCCCGCCCCGAAGGCGCGCUGUGGGGCGCAGGCGCAGGCCCGCCGCGAGGGGGCCCGAGGGCCCCGCCCGAGAGGGUGCAAGCCCCGUACGGCGGCCGCCGGGCCUGCGCGGCGAGUAGCGCUGCUUGAGCGUGCAGCGCGAAGGGAGGCGCGGCCCUUCCAAGGCUAAAUACGCCCCGGGACCGAUAGCGGACCAAGUAGCGCGAGCGAACGGUGAAAAGGACGCCCUGCGGCCGCUCAAAAGACCUGAACCCGGCCGGCCGCCGGCCCGCCGGCCCCGUCUCGAAACACGGACCGAGGAGCCACGCGCCGCGGCGAGCCCGAGGGAGCCCCCGCGGCGGAGCGAGCGCGAGACGCCCCGGGCCCGCCAUGCCCCUGCGGGCGUGCGCGGGCCGAGCCGCGGCGCGUGGGCCCGAAAGGCGGUGAUCUAUGCCCGGCGAGGGCGAGGCCGGGCGAAAGCCUGGUGGAGGCCCGCCGCGGUGCUGACGCGCAGAUCGCUCGUCGGAGCCGGGCAUGGGGGCGAAAGACUCAUCGAACCGCCUGGUAGCUGGUUGCCUCCGAAAUGUCUCCCAGGACAGCCGCCGCCCCGCAGUUGCGGCCCGUAGAGCGCUGGCCGGCGGGAGCGGGGGGCCUGCCCCUCGCCCGCCCCCCAAACUCCGAAGGGCCGCGCCGCCCCGCCGCUGGCCUGGGCGGGGCGGGCGAAUGCGGGCGGCGCGUGGGCCCCUCCUGGUAAGCAGGACGGGCGAGGCGGGACGAUCCGGACGCCGGGCCAGGGUGCGCCGCCGGGGCCCGCGGAACGGCGUCGGCCGGUCCCGACAGCUGGAAGGUGGCCCCAGAAGUCGGCAUCCUCCAGGGAGUGUGUAACAACCCACCAGCCGAAUCGGCCGGCCCGGAAAAUGGAGCGCGCCGGAGCCCCGGACCCGCGCCCGGCCGCCGCGCGCGGCGGGUAGGAGGCCGCAGAGGCCCCGGGGGCGAAGGCGGCGCGCAGGCCCCGCCGGACCGGCCUCUGGUGCAGAUCUCGGCAGCAGUAGCCGCUACUCCGCGCCCCGGAGGACUGAGGGGGAGACGGGUUCCGCGGCGCCUGCAUCUGGCCGCGGGUGACUCGGGCCUAAGCGGCGGGUGAAGACCGGGAAGGGGCGUGCCCGCCCGUCGAACGGGGAGCCGGCGGAGACUCCGGCAGGCGCGGCCCCCGCGGAGACGCCCGCCCCCCGGCGACGCGCACGGGGACCGCGGCGGGCGGCGCCCCGGCCCGCGAACGCCCCGCAGCCCCCGGACGCCUUGCGCGGAGAGGGGGGCCCGGGGGCGGACCCCGCGCGUCCCCGGCCGCCCCUGAAAAGCCGGGGGGCGCCGGCCGCGCGCCGUACCGACCGCAGCAGGACUCCGGGGUCAGCAGCCUCUAGCGCGGGAGCGAACGCGGCUCAGGGAAGUCGGCAAGCCGGCUCCGUAACCUCGGGAAAAGGAGUGGCUCUGACGGCGCGCCGGGUCAGAACUGGAACGGACGCGGGGAUCCCGACUGUUUACUAGAAACACAGCGUCGCGAGGGCCGCACCCGGCGCUGGCGCGACGUGAUUUCUGCCCAGUGCCACGACCGUCACCGUGAAGCGAUCCGCCGAAGCCCUGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCGGGCAAUUUCCGACGUGCAUGAAUGGACCAACGAGGAUCCCACUGUCCCGAGCCGCGCCUCCGCGAGCCUCCAGCCUCGGGAACGGGCGAGGGCCGGCCAGCGGGGCAAGAAGACCCUUUUGAGCUUGACUCCAGCCCGGGCCUGUGGGGCGGGGCGGCCGGCGCAGCGCACAGGGGAGGCCGCGCCCCUGAGACACCCUGACGGCCGCCGCCGCCCCGCUCACCCGGUCGCGCGGGGACCCGCCCGGGCGGGGAGUUCGGCUGGGGCGGCGCGCCUGCUACACCGGACCGCAGGCGUCCCACGGCGGGCUCAGCGAGGACGGAGACCUCCCGCGGAGCAGAAGGGCACAAGCCCGCCCGACCCGCGCCCCCCGUGCCGGCGCGGGCCGCGAAAGCGGGGCCUACCGAUCCUUCGCCGCCCCGGCCGCGGGCGCGGAGGUGGCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCCGCCGAGCGCCCGCAGCGACGCGGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUACCGUCCGCGCGCACCGGCGCGGAAGCGUCGGAUUGUUCACCCGUUCAAGGGAUCGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGGCCCCGGGGCCAGAGCACGGCGGGCCAGUACGAGAGGAACGCCCGCCGCGGGCCGCCAGCCCCGCGGUUGCCCGGCCGGGCAGCGCCGCGCCGCCGCGCCCGGGGGCCCUGCGCUGACCGCCUCUAAGCGCGCACCCCGCCUCGCGCCCCGCCCGGCCGCGCGCCCCAGCCCCGUGCCCCGUCGCCGAGCGGCCCCCGCCCGGGGAGACCACCCGGCGCGGCGCUCCUGUACGGCGCAGAGCCCUGCGAUCGCCUGAGGGACGCGCCUGCAGAGCGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-01-08 Deposition Author(s): Bilodeau, D.Y. , Eiler, D.R. , Kieft, J.S. , Rissland, O.S. , Wimberly, B.T.