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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8DYW

Cryo-em structure of 239 fab in complex with recombinant shortened plasmodium falciparum circumsporozoite protein (rscsp)

PDB DOI: 10.2210/pdb8dyw/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Plasmodium Falciparum

Deposited: 2022-08-05
Deposition Author(s): Martin, G.M. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.72 Å

8dyw
Literature

Cryo-em structure of 239 fab in complex with recombinant shortened plasmodium falciparum circumsporozoite protein (rscsp)

Martin, G.M. , Ward, A.B.

Primary Citation of Related Structures: 8DYW


Proteins
Molecule Chains Sequence Length Organism Sequence
Circumsporozoite protein I 278 Homo Sapiens , Plasmodium Falciparum YGSSSNTRVLNELNYDNAGTNLYNELEMNYYGKQENWYSLKKNSRSLGENDDGNNEDNEKLRKPKHKKLKQPADGNPDPNANPNVDPNANPNVDPNANPNVDPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNKNNQGNGQGHNMPNDPNRNVDENANANSAVKNNNNEEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCSSVFNVVNS
239 Fab light chain L 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain B 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain D 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain F 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain N 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain P 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain R 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain T 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain V 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab light chain X 215 Homo Sapiens , Plasmodium Falciparum DIQMTQSPSTLSASVGDRVTITCRASQSVSTSLAWYQQKPGKAPNLLIYQASTLYRGVPSRFSGSGSGTEFTLTIGSLQPDDFATYYCQHYNSYSRITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
239 Fab heavy chain H 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain A 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain C 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain E 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain M 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain O 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain Q 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain S 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain U 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
239 Fab heavy chain W 450 Homo Sapiens , Plasmodium Falciparum QVQLVESGGGVVQPGRSLRLSCAASRLTFRNFGMHWVRQTPGKGLEWVAVIWHDGSNKFYADSVEGRFTISRDNSKNTLYLQMNSLRDEDTAIYYCAKDWGGASDRVFDYWGRGTLVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-08-05
Deposition Author(s): Martin, G.M. , Ward, A.B.