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8DO6

The structure of s. epidermidis cas10-csm bound to target rna

PDB DOI: 10.2210/pdb8do6/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Staphylococcus Epidermidis Rp62A , Synthetic Construct

Deposited: 2022-07-12
Deposition Author(s): Dunkle, J.A. , Paraan, M. , Stagg, S.M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8do6
Literature

The structure of s. epidermidis cas10-csm bound to target rna

Dunkle, J.A. , Paraan, M. , Stagg, S.M.

Primary Citation of Related Structures: 8DO6


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR system Cms endoribonuclease Csm3 E 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 G 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 F 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms protein Csm2 C 141 Staphylococcus Epidermidis Rp62A , Synthetic Construct MILAKTKSGKTIDLTFAHEVVKSNVKNVKDRKGKEKQVLFNGLTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED
CRISPR system Cms protein Csm2 D 141 Staphylococcus Epidermidis Rp62A , Synthetic Construct MILAKTKSGKTIDLTFAHEVVKSNVKNVKDRKGKEKQVLFNGLTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED
CRISPR system Cms protein Csm4 B 304 Staphylococcus Epidermidis Rp62A , Synthetic Construct MTLATKVFKLSFKTPVHFGKKRLSDGEMTITADTLFSALFIETLQLGKDTDWLLNDLIISDTFPYENELYYLPKPLIKIDSKEEDNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFNIGYFSLQTKVSLIAQETDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDHLNNIMTALQYSGLGGKRNAGYGQFEYEIINNQQLSKLLNQNGKHSILLSTAMAKKEEIESALKEARYILTKRSGFVQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDIFNVGHNGKHPVYRYAKPLWLEV
CRISPR system Cms protein Csm5 H 340 Staphylococcus Epidermidis Rp62A , Synthetic Construct MTIKNYEVVIKTLGPIHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNLLYTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWEAFVSYSEKVNQGKKYGNTRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTTLVSKYNNEKNKDIYSKIKVSDSKPIDESNLAIYQKIDINKSEKSMPLYRECIDVNTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGIPDVLNQNILFLGAGTGFVSKTTHYQLKNRKQAKQDSFEILTKKFRGTYGKMKEIPSNVPVALKGTTNQSRHTSYQQGMCKVSFQELNNEVL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA i 37 NA ACGAGAACACGUAUGCCGAAGUAUAUAAAUCAUCAGU
Target RNA j 43 NA CUUUGUACUGAUGAUUUAUAUACUUCGGCAUACGUUCUCUAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-12
Deposition Author(s): Dunkle, J.A. , Paraan, M. , Stagg, S.M.