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8D2M

Covalent schiff base complex of yedk c2a and abasic dna

PDB DOI: 10.2210/pdb8d2m/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-05-30
Deposition Author(s): Eichman, B.F. , Paulin, K.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.821 Å

8d2m
Literature

Covalent schiff base complex of yedk c2a and abasic dna

Eichman, B.F. , Paulin, K.A.

Primary Citation of Related Structures: 8D2M


Proteins
Molecule Chains Sequence Length Organism Sequence
Abasic site processing protein YedK A 227 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ
Abasic site processing protein YedK B 227 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') c 7 NA GTCXGGA
DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') d 7 NA GTCXGGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-05-30
Deposition Author(s): Eichman, B.F. , Paulin, K.A.