7YOT
Cryo-em structure of rna polymerase in complex with p protein tetramer of newcastle disease virus
PDB DOI: 10.2210/pdb7yot/pdb
Classification: VIRUS Organism(s): Avian Orthoavulavirus 1
Deposited: 2022-08-02 Deposition Author(s): Chen, Y. , Jingyuan, C.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
Cryo-em structure of rna polymerase in complex with p protein tetramer of newcastle disease virus
Primary Citation of Related Structures: 7YOT
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NDV P protein | D | 399 | Avian Orthoavulavirus 1 | MATFTDAEIDELFETSGTVIDSIITAQGKPVETVGRSAIPQGKTKALSLAWEKHGNTNTPAAQESAGEQDQHGQNQASNSNRATPEEGPHSSQAQAATQPQEDANESQLKTGASSSLLSMLDKLSNKSSNAKKGPPQSPPQQALHSKGSPAVEQTQHGANQGRAQQETGHQAAPSPGPPGTGVNIAFPGQRGVSPQSVGATQPAPQSGQNQGSTPASADHVQPPVDFVQAMMSMMEAISQRVSKIDYQLDLVLKQTSSIPTMRSEIQQLKTSVAVMEANLGMMKILDPGCANVSSLSDLRAVAKSHPVLIAGPGDPSPYVTQGGEIALNKLSQPVPHPSDLIKHATSGGPDIGIERDTVRALILSRPMHPSSSSKLLSKLDSAGSVEEIRKIKRLALNG |
| NDV P protein | C | 399 | Avian Orthoavulavirus 1 | MATFTDAEIDELFETSGTVIDSIITAQGKPVETVGRSAIPQGKTKALSLAWEKHGNTNTPAAQESAGEQDQHGQNQASNSNRATPEEGPHSSQAQAATQPQEDANESQLKTGASSSLLSMLDKLSNKSSNAKKGPPQSPPQQALHSKGSPAVEQTQHGANQGRAQQETGHQAAPSPGPPGTGVNIAFPGQRGVSPQSVGATQPAPQSGQNQGSTPASADHVQPPVDFVQAMMSMMEAISQRVSKIDYQLDLVLKQTSSIPTMRSEIQQLKTSVAVMEANLGMMKILDPGCANVSSLSDLRAVAKSHPVLIAGPGDPSPYVTQGGEIALNKLSQPVPHPSDLIKHATSGGPDIGIERDTVRALILSRPMHPSSSSKLLSKLDSAGSVEEIRKIKRLALNG |
| NDV P protein | B | 399 | Avian Orthoavulavirus 1 | MATFTDAEIDELFETSGTVIDSIITAQGKPVETVGRSAIPQGKTKALSLAWEKHGNTNTPAAQESAGEQDQHGQNQASNSNRATPEEGPHSSQAQAATQPQEDANESQLKTGASSSLLSMLDKLSNKSSNAKKGPPQSPPQQALHSKGSPAVEQTQHGANQGRAQQETGHQAAPSPGPPGTGVNIAFPGQRGVSPQSVGATQPAPQSGQNQGSTPASADHVQPPVDFVQAMMSMMEAISQRVSKIDYQLDLVLKQTSSIPTMRSEIQQLKTSVAVMEANLGMMKILDPGCANVSSLSDLRAVAKSHPVLIAGPGDPSPYVTQGGEIALNKLSQPVPHPSDLIKHATSGGPDIGIERDTVRALILSRPMHPSSSSKLLSKLDSAGSVEEIRKIKRLALNG |
| NDV P protein | E | 399 | Avian Orthoavulavirus 1 | MATFTDAEIDELFETSGTVIDSIITAQGKPVETVGRSAIPQGKTKALSLAWEKHGNTNTPAAQESAGEQDQHGQNQASNSNRATPEEGPHSSQAQAATQPQEDANESQLKTGASSSLLSMLDKLSNKSSNAKKGPPQSPPQQALHSKGSPAVEQTQHGANQGRAQQETGHQAAPSPGPPGTGVNIAFPGQRGVSPQSVGATQPAPQSGQNQGSTPASADHVQPPVDFVQAMMSMMEAISQRVSKIDYQLDLVLKQTSSIPTMRSEIQQLKTSVAVMEANLGMMKILDPGCANVSSLSDLRAVAKSHPVLIAGPGDPSPYVTQGGEIALNKLSQPVPHPSDLIKHATSGGPDIGIERDTVRALILSRPMHPSSSSKLLSKLDSAGSVEEIRKIKRLALNG |
| RNA-directed RNA polymerase L | A | 2211 | Avian Orthoavulavirus 1 | MAGSGSERAEHQIILPESHLSSPLVKHKLLYYWKLTGLPLPDECDFDHLILSRQWKKILESSTPDIERMIKLGRSVHQTLSHSSKLTGILHPRCLEDLVGLDIPDSTNKFRRIEKKIQIHNTRYGEPFTRLCSYVEKKLLGSSWTHKIRRSEEFDSLRTDPAFWFHSSWSTAKFAWLHVKQIQRHLIVAARTRSASNKLVTLSHRSGQVFITPELVIVTHTNENKFTCLSQELVLMYADMMEGRDMVNIISSTAVHLRCLAEKIDDILRLVDALARDLGNQVYDVVALMEGFAYGAVQLLEPSGTFAGDFFSFNLQELRDTLICLLPQRIADSVTHAIANIFSGLEQNQAAEMLCLLRLWGHPLLESRAAAKAVRAQMCAPKMVDFDMILQVLSFFKGTIINGYRKKNAGVWPRVKAHTIYGNVIAQLHADSAEISHDIMLREYKNLSAIEFEACIEYDPVTNLSMFLKDKAIAHPRNNWLASFRRNLLSEEQKKNVQDSTSTNRLLIEFLESNDFDPYKEMEYLTTLEYLRDDSVAVSYSLKEEEVKVNGRIFAKLTKKLRNCQVMAEGILADQIAPFFQGNGVIQDSISLTKSMLAMSQLSYNSNRKRITDCKERVSSSRNHDLKGKHRRRVATFITTDLQKYCLNWRYQTIKLFAHAINQLMGLPHFFEWIHLRLMDTTMFVGDPFNPPSDPTDYDLTKVPNDDIYIVSARGGIEGLCQKLWTMISIAAIQLAAARSHCRVACMVQGDNQVIAVTREVRPDDSPESVLTQLHEASDNFFRELIHVNHLIGHNLKDRETIRSDTFFIYSKRIFKDGAILSQVLKNSSKLVLVSGDLSENTVMSCANISSTVARLCENGLPKDFCYYLNYLMSCIQTYFDSEFSITSSTQSGSNQSWINDIPFIHSYVLTPAQLGGLSNLQYSRLYTRNIGDPGTTAFAEVKRLEAVGLLGPNIMTNILTRPPGNGDWASLCNDPYSFNFESVASPSIVLKKHTQRVLFETCSNPLLSGVHTEDNEAEEKALAEYLLNQEVIHPRVAHAIMEASSVGRRKQIQGLVDTTNTVIKIALSRKPLGIKRLARIINYSSMHAMLFRDDVFLSNRANHPLVSSDMCSLALADYARNRSWSPLTGGRKILGVSNPDTIELVEGEILSISGGCSKCDSGDEQFTWFHLPSNIELTDDTSKNPPMRVPYLGSKTQERRAASLAKIAHMSPHVKAALRASSVLIWAYGDNDINWTAALKLARSRCNISSEYLRLLSPLPTAGNLQHRLDDGITQMTFTPASLYRVSPYVHISNDSQRLFTEEGVKEGNVVYQQIMLLGLSLIESLFPMTVTKTYDEITLHLHSKFSCCIREAPVAVPFELTGVAPDLRVVASNKFMYDPNPVAEGDFARLDLAIFKSYELNLESYSTVELMNILSISSGKLIGQSVVSYDEETSIKNDAIIVYDNTRNWISEAQNSDVVRLFEYAALEVLLDCSYQLYYLRVRGLNNVVLYMSDLYKNMPGILLSNIAATISHPIIHSRLHTVGLISHDGSHQLADTDFIELSAKLLVSCTRRVVSGLYAGNKYDLLFPSVLDDNLNEKMLQLISRLCCLYTVLFATTREIPKIRGLPAEEKCAMLTEYLLSDAVRPLLSPEQVDSITSPSIVTFPANLYYMSRKSLNLIREREDRDSILALMFPQEPLFEFPLVQDIGARVKDQLTMKPAAFLHELDLSAPARYDAYTLEQARSDCALADMGEDQLVRYLFRGVGTASSSWYKASHLLSVPEIRCARHGNSLYLAEGSGAIMSLLELHIPHETIYYNTLFSNEMNPPQRHFGPTPTQFLNSVVYRNLQAEVPCKDGFVQEFRTLWRENTEESDLTSDKAVGYITSVVPYRSVSLLHCDIEIPPGSNQSLLDQLATNLSLIAMHSVREGGVVIVKILYSMGYYFHLLVNLFTPCSVKGYVLSNGYACRGDMECYVVFVMGYLGGPTFVNEVVRMAKTLIQRHGTLLAKSDETALMALFTSQKQRVDNILSSPLPRLAKLLRRNIDTALIEAGGQPVRPFCAESLVNTLSDITQTTQVIASHIDTVIRSVIYMEAEGDLADTVFLFTPYNLSIDGKKRTSLKQCTRQILEVTILGLGPEDLNRVGDIISLILRGTISLEDLIPLRTYLKMSTCPKYLKSVLGLTKLREMFSDGSMLYLTRAQQKFYMKTVGNAVKGYYNSSKNENLYFQG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-08-02 Deposition Author(s): Chen, Y. , Jingyuan, C.