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FASTA Sequence PDB Format mmCIF Format
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7X8Z

The sars-cov-2 receptor binding domain bound with the fab fragment of a human neutralizing antibody ab188

PDB DOI: 10.2210/pdb7x8z/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-03-15
Deposition Author(s): Kamada, K. , Shirouzu, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Literature

The sars-cov-2 receptor binding domain bound with the fab fragment of a human neutralizing antibody ab188

Kamada, K. , Shirouzu, M.

Primary Citation of Related Structures: 7X8Z


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 1278 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQAAAGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGSSGRENLYFQGGGGSGLNDIFEAQKIEWHEGHHHHHH
Ab188 heavy chain H 265 Severe Acute Respiratory Syndrome Coronavirus 2 MDPKGSLSWRILLFLSLAFELSYGLELEEVQLVESGGGLVQPGGSLRLSCAASGFTFINYKMNWVRQAPGKGLEWVSYISSGSDAIYYADSVKGRFTISRDNAKNSLYLQMNSLRDEDTALYYCARGGGYNYGECMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCENLYFQGHHHHHH
Ab188 light chain L 248 Severe Acute Respiratory Syndrome Coronavirus 2 MDPKGSLSWRILLFLSLAFELSYGLELEDIQMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQHYYSPPPTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-03-15
Deposition Author(s): Kamada, K. , Shirouzu, M.