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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7R7C

State e2 nucleolar 60s ribosomal biogenesis intermediate - l1 stalk local model

PDB DOI: 10.2210/pdb7r7c/pdb

Classification: RIBOSOME
Organism(s): Saccharomyces Cerevisiae By4741

Deposited: 2021-06-24
Deposition Author(s): Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.71 Å

7r7c
Literature

State e2 nucleolar 60s ribosomal biogenesis intermediate - l1 stalk local model

Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.

Primary Citation of Related Structures: 7R7C


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
25S rRNA 1 226 NA GCGGUCGAUCGUUUCCCUCAGGAUAUUUUUGGUAAGCAGAACUACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUAUUGUCAGGUGGGGAGUAAAGUUACCACAGGGAUAAUUGUGGCAGUCUUGCUGACCGUCGUGAGACAGGUUAG

Proteins
Molecule Chains Sequence Length Organism Sequence
Nucleolar GTP-binding protein 1 B 54 Saccharomyces Cerevisiae By4741 KITRIRAFYMRKVKSLVEQVARDYVRLLKFGQSLFQCKQLKRAALGRMATIVKK
Ribosome biogenesis protein BRX1 A 291 Saccharomyces Cerevisiae By4741 MSSIYKALAGKSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSNDALFK
60S ribosome subunit biogenesis protein NIP7 L 181 Saccharomyces Cerevisiae By4741 MRQLTEEETKVVFEKLAGYIGRNISFLVDNKELPHVFRLQKDRVYYVPDHVAKLATSVARPNLMSLGICLGKFTKTGKFRLHITSLTVLAKHAKYKIWIKPNGEMPFLYGNHVLKAHVGKMSDDIPEHAGVIVFAMNDVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEYLRDEDTLFT
Ribosome biogenesis protein ERB1 M 63 Saccharomyces Cerevisiae By4741 TQNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLDSIELPEGWTGLLDKNSGSSLN
25S rRNA (cytosine(2870)-C(5))-methyltransferase Q 618 Saccharomyces Cerevisiae By4741 MGSRRHKNKQAAPPTLEEFQARKEKKANRKLEKGKRPSTTQGDEVSDRKKKKSKPFKKSRKEEEEVVEEDKDLPEVDLEELSKARKSLFDDEEDDDEAGLVDEELKDEFDLEQEYDYDEDEDNDAHPIFSDDDDEADLEELNAQNMEALSKKLDEEEAEEAEEAEMELVEAENMQPRADILPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEEDDKYIEKSVKNNLLKKGVNPKAKRPSNEK
Ribosome biogenesis protein NSA2 homolog R 104 Saccharomyces Cerevisiae By4741 RMITKHTFVGEGFTRRPVKMERIIRPSALRQKKANVTHPELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELVWGKYAQVTNEPDRDGCVNAVLLD
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase W 12 Saccharomyces Cerevisiae By4741 QRALRRIAKKHH
60S ribosomal subunit assembly/export protein LOC1 7 204 Saccharomyces Cerevisiae By4741 MAPKKPSKRQNLRREVAPEVFQDSQARNQLANVPHLTEKSAQRKPSKTKVKKEQSLARLYGAKKDKKGKYSEKDLNIPTLNRAIVPGVKIRRGKKGKKFIADNDTLTLNRLITTIGDKYDDIAESKLEKARRLEEIRELKRKEIERKEALKQDKLEEKKDEIKKKSSVARTIRRKNKRDMLKSEAKASESKTEGRKVKKVSFAQ
rRNA-processing protein EBP2 J 96 Saccharomyces Cerevisiae By4741 AFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-06-24
Deposition Author(s): Cruz, V.E. , Erzberger, J.P. , Peddada, N. , Sekulski, K.