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FASTA Sequence PDB Format mmCIF Format
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7N9X

Ca-targeting nanobody is a tool for studying hiv-1 capsid lattice interactions

PDB DOI: 10.2210/pdb7n9x/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama

Deposited: 2021-06-18
Deposition Author(s): Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.511 Å

7n9x
Literature

Ca-targeting nanobody is a tool for studying hiv-1 capsid lattice interactions

Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.

Primary Citation of Related Structures: 7N9X


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein BBB 222 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG
Capsid protein CCC 222 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG
Capsid protein AAA 222 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG
Nanobody FFF 115 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama DVQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTXXAYWGQGTQVTVS
Nanobody EEE 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama DVQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTAYWGQGTQVTV
Nanobody DDD 114 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama VQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQRNRLKPEDTAVYYCFAALDTXXAYWGQGTQVTVS
Peptidyl-prolyl cis-trans isomerase A GGG 165 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
Peptidyl-prolyl cis-trans isomerase A HHH 165 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
Peptidyl-prolyl cis-trans isomerase A III 165 Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-06-18
Deposition Author(s): Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.