Ca-targeting nanobody is a tool for studying hiv-1 capsid lattice interactions
PDB DOI: 10.2210/pdb7n9x/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama
Deposited: 2021-06-18 Deposition Author(s): Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.
Ca-targeting nanobody is a tool for studying hiv-1 capsid lattice interactions
Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.
Primary Citation of Related Structures: 7N9X
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Capsid protein | BBB | 222 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG |
Capsid protein | CCC | 222 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG |
Capsid protein | AAA | 222 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | PIVQNLQGQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQGVG |
Nanobody | FFF | 115 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | DVQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTXXAYWGQGTQVTVS |
Nanobody | EEE | 112 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | DVQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQMNRLKPEDTAVYYCFAALDTAYWGQGTQVTV |
Nanobody | DDD | 114 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | VQLQESGGGLVQAGGSLRLSCAASGSISRFNAMGWWRQAPGKEREFVARIVKGFDPVLADSVKGRFTISIDSAENTLALQRNRLKPEDTAVYYCFAALDTXXAYWGQGTQVTVS |
Peptidyl-prolyl cis-trans isomerase A | GGG | 165 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE |
Peptidyl-prolyl cis-trans isomerase A | HHH | 165 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE |
Peptidyl-prolyl cis-trans isomerase A | III | 165 | Homo Sapiens , Human Immunodeficiency Virus 1 , Lama Glama | MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE |
Method: X-RAY DIFFRACTION
Deposited Date: 2021-06-18 Deposition Author(s): Digianantonio, K.M. , Gerber, E.E. , Smaga, S.S. , Summers, B.J. , Tripler, T.N. , Xiong, Y.