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7M07

Pre-catalytic ternary complex of dna polymerase lambda with bound 1-nt gapped ssb substrate and incoming dumpnpp

PDB DOI: 10.2210/pdb7m07/pdb

Classification: TRANSFERASE
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2021-03-10
Deposition Author(s): Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.57 Å

7m07
Literature

Pre-catalytic ternary complex of dna polymerase lambda with bound 1-nt gapped ssb substrate and incoming dumpnpp

Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.

Primary Citation of Related Structures: 7M07


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 346 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSAAAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3') t 11 NA CGGCAGTACTG
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') p 6 NA CAGTAC
DNA (5'-D(P*GP*CP*CP*G)-3') d 4 NA GCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-03-10
Deposition Author(s): Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.