The structure of the mitoribosome from neurospora crassa with bound trna at the p-site
PDB DOI: 10.2210/pdb6ywy/pdb
Classification: TRANSLATION Organism(s): Algoriphagus Machipongonensis
Deposited: 2020-04-30 Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.
The structure of the mitoribosome from neurospora crassa with bound trna at the p-site
Amunts, A. , Itoh, Y. , Naschberger, A.
Primary Citation of Related Structures: 6YWY
Proteins | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
Related to ribosomal protein YmL20, mitochondrial | A | 225 | Algoriphagus Machipongonensis | MEASLSLFRPVATCCRRVALSSSSSSSQKAAAVAGISVRYQSTANRTKRMLNIPPHESFLNVPVEGDRIIFNPPSSEASVYHTPFKFLPRSDPRRRANIYKLFKPPQAPITTPESSSTDAAAADQHGDLPPVLYNPTKSYNVTPEQVEEIRELRAKDPKKYSVTYLSNKYNCTKVFIMMCTQAPREHQEQHKLARARTAENWGPRRAAAKLDARRRKEMLHRGEI |
Probable ribosomal protein YmL44, mitochondrial | H | 98 | Algoriphagus Machipongonensis | MLTRFITDVSTRFNPFSAKAKAARLFLSFLPPNARSNGMNITTQLLPRNSTETPLLYVKFKDGKEMNLDVENMGIKSIVEEVDRHSRILQKQADLNDG |
mL54 | I | 218 | Algoriphagus Machipongonensis | MICRTCLRRASGFARPAAAAATRPMVAASSRAAFSTTFSVCTPPAATPAAAAPATSTAEAGLAPVPGAATTEQAKAAISSCPAGTKLNGLNYFKNKADPVALPDEEYPEWLWRCLEVQKKTDDAADADAGDEFSKSKKQRRLAMKRARAQEAKILASGDLEALAPKIPLQKQSVNLPGAVNGGVQDAVLADEKREELRKAMRKERKAKIKESNYLKAM |
L51_S25_CI-B8 domain-containing protein | J | 201 | Algoriphagus Machipongonensis | MVGVIRRLNVVRELLNIRAGPGAALLPKEVTKVHMQFAHRIEEGHMGPRKFWRENLPKLKYWNPAVPMVINRTTDQKGPAVMTIYFRDDKDAKPSSTPFPTSSADGSSPAPKPAQGERIVTIDMKNRNSSVILKEFLDKTGAVAVQPTAKDEEEFREFEDLHRRSEIDRERIRKMNDAKKREKAMLAKAMSDAQSIKAASA |
Related to ribosomal protein L16, mitochondrial | K | 249 | Algoriphagus Machipongonensis | MKHNASSALLSAFQGLRISSSATPFRAASLATSAVRRPIAPTPVSVASHVRLFSATAIQAGSWLEPNLNRKKKMMKGRPRVPTGGSTKGTTVVWGDYGLRMRDHHRRISAQQLKLAEDTIKQRLRGQKYRLYKRVACNVGVYVSGNEMRMGKGKGSFDHWATRVAVNQIIFEIRGQLHEQVIRDAFRLAGHKLPGLYEFVKKGDPPVVGITKLEDGLTVEDLKNPRKKLLMPEITQSAASTSSTAAPPS |
uL17m | L | 193 | Algoriphagus Machipongonensis | MAGAHVKYRHLSRSSAHRQALLRNLVTSLIKNETIHTTYPKAKEAQRLAEKLITLSKRDTETARRSAQGILYTPDQLLPKLFGEIRERYANRPGGYTRVLRTEPKDQYSQAPSAILELVDGPKDMRFAMTAATVARDREQKTESTDLTKKNMDKVTRFRKDGMRAFEDMVASLRDMKFTAGAINPKEWKKLDR |
bL19m | M | 258 | Algoriphagus Machipongonensis | MNVTASLSRRPLGCLKAGLCQSLIRGYATAVAASTTQSTGALPDHNFFRIADKHTKKTRTAFAVFTPPKSPTTLPPSSVVTKSKAFKIANSKLPPLMTKPPSDPMPLLTQQQIARMDPTGARTALFSKARHAARVGDVLMVTHRRGGEPFAGVCLAIRRSGIDTAILLRNHLGKVGVEMWYKIYNKNVAGIEIIKRRAKRARRAKLMYMRQPKHDMGSVEQYVFAWKKMRKVLSSKGLTGGVGGGGGKQKGQESKKKN |
Related to ribosomal protein YmL49, mitochondrial | N | 217 | Algoriphagus Machipongonensis | MSRALLRSVLELRTPVTRLPPSFLLPFRPAARFLHQTAQQVEPTSQSDAAAAAATLLKASPPKVTTATTPEAPAAVPTSTPFSQQPPISQQVKELLPVLAAQPGHYTTIHIHGKPYLVTEGDTVKLPFKMPGVAPGDVLRLNRASVIGSRDLTLQGAPYVDERLFECRAIVMGTESEPMRVMIKKKRRCRKKKHVFSKHKYTVLRINQLKINDVSSL |
Mitochondrial large ribosomal subunit | O | 364 | Algoriphagus Machipongonensis | MSLNVPSRRLLKSAPSSANALVPALQSLSINTRSIHTTPSQQWSLFGWGKQKVEERNKVKEELKQSELARTRKPTQEEIFERVRGRLEGDSIFADTTPSSQLAAEQDKHKDWATASAEKKLAAAHAKDQTPTGISLKKDHLVRVVDPDPRSRVRWERKMVIRKLQRGTDPWSVEPKAERIARTERKLVYKTGYLPTSVKKLVHLSRQIRGKTVSEALVQMQFSKKKMAKEVKTELLRAEAKAIVTRGMGLGKAAAAAAQKETGAEPVKIQTKDGKHLEIRDPTRIYVAETFVNKGFTRGVELDYRARGRVFKMNKPTTTMTVVLKEEKTRIREHQERVAKKLRQGPWVHLPDRPVTSQRQFYSW |
uL23m | P | 228 | Algoriphagus Machipongonensis | MASVAKTGAEALRNAPFRVGKKQIFLPNHVITFVRPLPKQPPNLATFIVPLEFNKLDLRDYLYHVYNVEVTGVRSFVNQRMHEQRHGDVGNWRRPKSQKMMIAELAKPFVWPKPPAEDAREAFDYAMWKKQKTAQEQDTKFQGIRAQGEVVPPSQFEVTKDRKAIKARQSKFLSGEETWAPGKVNAFLNSKIVPEEEGWSEVEENLPLDESAESAAEESSSKGSETRQ |
KOW domain-containing protein | Q | 396 | Algoriphagus Machipongonensis | MDKLLRRVRMAEGMVARRAQRKNALLKRITERKQNKKNGEAFTEAIQQRKAAVEARNEDWMLGPLAPRRELDEITLSNGNFFGSLSPTRALLESEVSEEERKARVAWCGSPKFLCIAPGDRVVVIEGHHKDLIGTIEKLNTRNMTVEIQSEKLKTNTTVPQFMQNDADKPVTQIYARLPISSVRLVHPLKDPQTGEYRDVIIRELRPRNIVHDRPTRTRSMRRFVPGENIIIPWPKQEPIKREDQPADTLRIDVDEKTFVPTLFRPPAPQQVLDELRNKYSIFRTRHTPEYIAKKEQEEQEKEAKKSAAKAMLTPVQEYNRKQRELRRARGQPALTEEMLAKIGEVVARNKLGHHQAPKVKEETVAQIEKAVEQLSLGGGQEDAATTTSPEQPKVV |
Mitoc_mL59 domain-containing protein | B | 162 | Algoriphagus Machipongonensis | AATVKQHVQLALSLPPRLRTFLARYPPASILPAGADPETHKTPYQEESPNPFMPTKHPITGKWHNPKYSLRRQAELVKLAQEHGVEELLPFTRKLNEEKLRKRVELGLRVKGTGVGEKVKGHKHERTLVAKMEKRREAMLAMPDLIREWKKVGKRNWTKFPK |
Related to 60s ribosomal protein L2 (Mitochondrial) | R | 447 | Algoriphagus Machipongonensis | MHLAQLRQPLTRAAANSCHSVCRLPTTHSSVSATAILSEQFAHLRIGPSSSNVAVEGRRYASVKAQGAYRLKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQLHPDRQYIGVVFNRNDKLPYPKDAPRKRKLGLVAVPRKVEEVEKPTMSASGLPLFVTRHETIEIPPPAVTTPAAAGKAVKGQGARVSASGAAAVPASSSTISASASSNSNNGGSSVIAELIKEKLAARAEYNARQSALRKLQQQKMLARRGTRVLRLMNNYSYRETNWEIGRLIGDPGSVPGTEKVGSRKAKFRARRRRRNTFLLGIKERKLAKADRREEYRRRVREKREQRLVQRKEFLAKQREAKKAREGGAAAEKSEKKEVKAEKPAAAAPKVEKPKAPEAAKKESKPKVEEKKAAAAEPKKDSKTEKKD |
bL28m | S | 274 | Algoriphagus Machipongonensis | MSSFLVRPFCLRATTTTTTTTTTTALVQQQLRALTTTTALTYHQPRVPSSAIPIPNVSGRVPLPDSTPVPEDFKIEIPSYPYGPRRVYHQSNTGLYGSALIRFGNNVSKRNEIKTRRKWRPNVQQKRLWSKSLGVFVRTRVTTRVLRTIDKVGGLDEYLLGHKAARVKELGPWGWMLRWRIMQTPEIRERFAKEREALGLPPRREEDEEKSLEEQLREFQVAGIQFAEGKAPKTKGQLKEEADRLIKKSETEEFGLGQEEDLFMKEEPKPTKMA |
54S ribosomal protein L4, mitochondrial | T | 263 | Algoriphagus Machipongonensis | MASPAALRPSMGAIMQTCRSAATAPKVAVAVPVRALSTSAALLKRHKYPTARVTRDNSKQRGESALRKSGTRWKLSVSDEPLPEPVPREELPPIQVDENHGLWDFFYDRETVAMAPLEHTKHGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWERTKSELGFGLAEANERDRNVKQTMRGIKHVLTERFYAWEDAVKLAEQDPEIDLSNPENPYTPSTFLEAEETAEGAEASETQSTTTEIDPTTIPSSKSQAEAPRV |
Related to ribosomal protein L30 | U | 161 | Algoriphagus Machipongonensis | MSFFRITLHRSAIGLPKRTHGVLAALGLRRRNQTVFHPVEPQFAGMLMKVKELVRVEEVPHRLTKRELKDERKPDAGFVVEKQVRRFIPGVGVQDEVDFSKVVEELKAQKVENVEGVEKMVVEGGAVVRDGKRAGDLGVRTRSDWEVIGKMKSVLPKVKAL |
Related to ribosomal protein YmL36, mitochondrial | V | 219 | Algoriphagus Machipongonensis | MSSKLPTTLLRRPSALPSTTTYTAYSASRPTPPSCTAHGAQGQQIRNATFVPRHRRPYQFTQLVQLSDGSTFTVRTTMPTALYKSAKDSRNHLLWQPSDKSLKNVELDEAGKLAAFRERYGRGWDLDAKMTPEEEAAAAAALAAGGGAGVPGGKAAKKAAEEALLAKKKKEEEEAAKKAAEAEEADPFDSLTDLISGYATENMNPGLNFKETRHYGKKK |
Related to ribosomal protein YmL32 (Mitochondrial) | W | 129 | Algoriphagus Machipongonensis | MAAMTAAAAAPAMRLFNPSTFFQTLRTQRFGVPALNFAVPAAAISLLPSIPSLLEDIWEGILRAVPKKKTSHMKKRHRQMAGKALKDVTHLNRCPACGNLKRMHHLCSTCLGKLKGFMDRNGGSNAKAY |
bL33m | X | 59 | Algoriphagus Machipongonensis | MAKKAKSRIINVRLISMAMTGYFYTFTRPRTSLPMSMLKYDPIVRRKVLFLEQKRKGRS |
Related to ribosomal protein L34, mitochondrial | Y | 140 | Algoriphagus Machipongonensis | MSRIFSSALQAVFKPSAFLPKTATRSFSILPSLRPATLSSTPSTIFRAPNAITAPSASPSATTGIDGEVLDLLSASSLISSHPALSGLGSQIRCGPRPTMSGATRLVQKRRHGFLSRVKTKNGQKTLKRRLAKGRLRLSA |
Ribosomal protein | 0 | 124 | Algoriphagus Machipongonensis | MSNLFRSLASSMRALSLAAPRATAVNTTKTVVSTHQTRCLSQGLLSRHICTPMCSHNRPVAVCQSAKNGLQSKQQSRGMKVHSAIKKRCEHCKVVRRKANKRQNGYLYIICPANPRHKQRQGYR |
PEBP-like protein | 1 | 449 | Algoriphagus Machipongonensis | MSTCQQVARPLVRCLRQTGPGAATCSTRSVAVAAVRPFSSTPMRKEEGATTTTTTSPVDSTTTPPPLPSATEAKATVADTVVGGPELGSRRRRAALATTGNLPFEQLPYQCFQDARKILQQDRAAKIAQIVKETEKIKLIEARDASEFEGGEAAKQTRIKSLRKYIEELKILADINDPEVKRRFEDGRGDMTKPVYRFMAERRWRSMDYKIIAQRISQFHVVPDLLPAFDPTMDVKLSFRGYQVSPGAILDSRVTEVAPTLRMQVFDKGERLLTVVVIDSDVPDVTHDNFKRRCHFLAANIPWDPSKTVLSLRSVGDRVEGDVGKPWLPPFAQKGSPYHRLNVFVLEQKPGAKIDGEALKKHLENRENFSLKGFREKFDLEPVGFNLFRSEWDEGTAEVMERHGIPGAEVEFKRQKFASLKPPRKARGWEAKRQKPKYKSLWKYVKRIA |
54S ribosomal protein L31, mitochondrial | C | 110 | Algoriphagus Machipongonensis | MFGAFRFTNPLSGGLLWKIPWRMSKFQKLRQRRRLRAVDNVVATIENALAKKGETVKAVERWRAEMPTEAEMLPKDKYTIFDRKEKRYRKGIHKLPKWTRVSQRVNPPGY |
mL40 | 2 | 370 | Algoriphagus Machipongonensis | MVSATKKPVSAMSAKNSTRHRKVSHKVTKTIATAKSQVISNKAMKIRTKSWKDMPSPKRRRRINAMVDELRLQGNVKMPKPGKSTYKAGGGERVRLVKAASTLPTPPLTPPVLSKPTGSASQSKGDLKPKRPTPEKKRSVSKRDVERFFLSTQTSTRRRENTPIHAPIMSSTFTSLRGLATRLFAGGARPSPSSLLLPNKPATAALPTAIQHQQTASYASKGKSGPPAGMFSGQKAGSKKSKGPKQVDPRIINILRHFAVLSPKRIPPPLRFGRNRYLRHWTIHRAWLLFRRQQREQRERILMQQHQSMSNACEELRNTEGPGTRETGYLYRVAMLKNGVYGLKSIPIEYASRALVETPGRQAWNHEWKR |
mL41 | 3 | 103 | Algoriphagus Machipongonensis | MQPTRILQGLKYRKLRLTTKDVNKGFYKGNRTGSMGTHTSYGTYKIDYTKVRTYVCPDLTGFKLTPFVSKTIRPVHDQFPGDKLGPKNPATYLARWKSENGLD |
L51_S25_CI-B8 domain-containing protein | 4 | 138 | Algoriphagus Machipongonensis | MTVKALTQISSAGRNGVGAFVLQCKKLDIHYSDWAGSSRGMNGFIKSLLPKFAAANPQIEFVVSPRPAKHPILMGHYINGRTKAICVRNMEPLEILKKAELLRDASGEKPQKFKKPVTSTNPSVRGVWSPYHGQGMAV |
Ribonuclease III | 5 | 439 | Algoriphagus Machipongonensis | MKRIATPSLTSRLLVAARSGVSPATAAIRSRSAISVRSQSTAALAQHDASHDLNNDRFPPLEPLPPAAESLPSPLPERALTSAKLAALHARLNLSPKIPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEWLLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVDTAAVPGGEVDPGLLQFDALKPGVAITNFGYKRTELAYLEKFKWRRGMASRVVLDDDFGDVVRSDPKVAADLEKAMEEQDQDKTPDEEEAEMVANEQDQDVSYDRYGNPDTRAAAERAHAYFVRAVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLFEFKYPTRELAALCAREDFEPPVARLLSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALKAWYLYSPGENPRVPSDMLEEGAKPWTPAYIDMGEVISR |
mL46 | 6 | 368 | Algoriphagus Machipongonensis | MSASSRGAALLRSQQRSICLQCRNQTRVLAPAGVTSAPRRFYSAEASATATATATATTTTTLPPPHPPVTTSTGTHAATSTSSQIYRIKSGVILTRPPLLTRDLTPFEESFYFYQKRLNERLTAPFRKDFYFKKDTAADLDWRIKLKERHGVPAKDIGRYNPRGRMAWNDEVLVGSQTSSRKHMVEKLLADAEMRVSEDGEEIPAEDRVPVEKPMPRRTEADEKGDVKRLDRALDKTLYLVVKKKADKEGEEAKWMFPTGVVPTDEGLHETAARILAESAGVNMNTWIVGRVPVAHHVVRPVFGQKDGALLKKGEKIFFLKGRIMAGQADLTDNLHDLVDFKWLTQEELRSTLAEEYFHSVKGMFAER |
mL49 | 7 | 165 | Algoriphagus Machipongonensis | MFRSTFFGLSRAIVQPATPLTVRAAFQSRFYSAAAAASQPTTTATTTTPLQQQQQQQPTTQPTTPIQTQTGAAPTESTKPVAKPYLVGRAWTQRLPVYHLAKRGGNKKLTQIKKVQGDGQALRRDLAQFLGLEVKEVRVKVPTGHLEVDGHRREEIVKFLDGLGF |
mL50 | 8 | 443 | Algoriphagus Machipongonensis | MRRIPRIPSTASALCSSSSSVASTSAAPLRTLRAAADSSSICQSCSFSTQTSATRNRVWQNTVQTQRRCASTVTETTPEAPVAAAAAETATESTETVEQQRKRKGGFFETQRQVNLVLPGQPTRADAPEKIRDPNYEPATSGAGLQEIGGMSDWWSKPEHFRDGGKQFEYQGFAPQEKITDPRLLKVILRRALAEGLALKKFGANPKNPADMASIIGNGDHWQRTVSVEMCRGENGELSLKNESDLQKVWILMRNAAEKTYYQREWQEEINRLRSLGEKEQAKQLLEEGKKLGYRLKSEEGSLVKLTVDEAVELRKSWNNDWKEAIIRDPVVKFYAAKRIQKMTGHILSDGKLTSIQTVANFMDALVTPPKPKKLAEQIEQSSILPELPNVKVYPRRVTPVDKERMVGRWKVIQKELQKRELPVLGTGNHGKYVELKWLGSKQ |
RNase III domain-containing protein | 9 | 267 | Algoriphagus Machipongonensis | MAALTPSRSVFASTCKTIAQQCSRRPVAVQQLAAVPVARQVSSSSAVQQEQDASGTSSSQQPRPRWSYTPERMKGPGFSLNLVKDPRRKQWMVNSDPAKLDAFYDAFLGQGGSRMLSEETKWLAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPIVDKYGRTPYNHAALANIDKLIYTQPLDIMDKTKIARMGIDFGLLTVMRWKPRMPEDLESSGVVVVLNSTLFAIIGAISLEKGAAVAQRIVREKILKRLGA |
mL67 | D | 292 | Algoriphagus Machipongonensis | MNSVTTSTIGRLAFGVSRLSAVTNVAGAVRHASTHPTTAIPKPTTAVLKTSPLAEETAVELKSPSRLQLKSEPGNKGNPKGHGDRIWAFHHIEQGQVIYSTKPVISHQHLIRQQPFTGKNLVPRKIRKDYWRPLAMIELAGKDQGAVGRSVYQKLREFKKRHELDWANEAEEGRKLMHKSKRERGQELNDQKPNSVADMAAVLAGAGKGNLMWQVSRLGSSSELVGEIKKASGAVEKGAVVDVKRQLRRATVYWTNEQDKFHAREWSDNVSHEVGIPGEAEKKRMPIRMSSE |
Poly-Peptide | CC | 7 | Algoriphagus Machipongonensis | AAAAAAA |
S4 RNA-binding domain-containing protein | DD | 453 | Algoriphagus Machipongonensis | MKIRRLFKYHSLKKKPIRPTWNKYNLYNLATAGREPRISGKTFFQQKWLAKSLTRAYHGEHIKERKWARMFSRRLPAVVNMDPAYMAKYNGSEQAAGRGSGLSEPPAYEKTADEKPAKQVIANPGRKVPTPYEQMTFAPLERRLDIAIFRALFASSARQARQMVVHGAVTVNGKKMKHPGYLLNPGDLFQVDVERVLYATGAPKDKKLLAAAMKAAKKELAEEAQEAAEEKDAEAEEAEEGEAQEAASKSGKKEKQVDTSKFDEAWNRKYELLQLQRLLQYAKHIADSPSHQLSATRKQALRALKRDIKAAIKQAQRRDGSVSPTGNVVDDLTMLLERLAVSPSKAIQQEEAAKELSKKLDKQSRQVLKKVIEYNDEHEDNEIDPSKPYMTPWRPRNYMSAFAFIPRYLEVNQNICAAVYLRHPVARPGESEVPSPFSPTINQLAFNWYLRRG |
Ribosomal protein S6 | FF | 117 | Algoriphagus Machipongonensis | MLYETIGIVRPGNIAEVKELVLTAGKLILNQGGVIRDIKNWGTFLLPRPISTNQQRHNRGHYFVMRYDASIATHEEVRRTMKADPRVIRTANVKLGDGKLETLSRFGAIPWRSLEEA |
60S ribosomal protein L1, mitochondrial | E | 303 | Algoriphagus Machipongonensis | MASTQQCLASLARLSLSTPTRAALPTIPKFLVPSVAASQVRYATNNPNKGGAKKAPKKKKQYKFFKSWDLTGQQQFSLCDAMRYLRAVEVGQPPLSVKYEVHVKLRTKKNGPVVRDRVRLPTPVKTDTRIAVICPEGSALQEEAKNLGAVMAGEETLFEAIRSGNFPFNKLLCHTESEGALRKANVGKLLGPKGLMPSGKTKTITNNLEATFRDMIGMDEYRERNGVVRMAVGQLGFTPKQLAENIRVFMAKIKSDIGKLDDTTPKMVEEVVLSTTHGPGMSLNAEFAPTDDKIKPEDLESVM |
Ribosomal_S7 domain-containing protein | GG | 309 | Algoriphagus Machipongonensis | MPARLGLSAAFRSLSIRTNQLPQQQSIAAAVQARTLITDSTTSSRLPPRVQIQQQQQQRTQPYSTETTPPPNSNNGDLAGIEGQPPVEVTPENAAALSQLSEIAYGVKAADVAIEGHKYGLPTLPLPSELHHKYRYSEVVNHATKLLMKDGKLSKAQRDMAMILNYLRSSPPPKLNPSRPLIPGHPPASHLPLNPVEYLTVAIDSVAPLIKMRGYKGLAGGGRSLEVPQPIPARQRRSTAFKWILDVVNKKPSKGSGRTMFAHRVAEEIVAVVEGRSSVWDKRMLIHKLGTANRANLNSPALQLKGKRF |
uS8m | HH | 161 | Algoriphagus Machipongonensis | MGIQQITNMCSHLQNASRARLGLTSLPNTKYNLALALALHRAGFISSITRGGPHPPTPEALMTYEPEPVTSANVATRRLWVGLKYWNEEPVLKELKPISKPSRLVTASLEQLNRVARGFPAGYMKGLQLGECLFVNTDRGVLEVREAVERKVGGLVLCKVK |
uS9m | II | 315 | Algoriphagus Machipongonensis | MMASLRHSITSALRSSRQGCSKSAQWQSLDQQFGALRISSRSLSTHAHDHNPNVDGQFIAAPALSIDNFKLHPYARAVPVSPSYFTRTPRFYDNYLSLEKLMEEYEDLPVIPATAVERVAWKTLEDIRKELGEQVKASEFARCLALVKRLNSIHPDLKPQEIKDVLDSFRRNVQPFTNVAKPIPIDQFGRACGVGKRKASSARAFVVEGTGEVLVNGKTLAEYFGRVHDRESAVWALRATNRIDKYNVWVKVEGGGTTGQAEAITLAIAKALLAHEPALKPALRRAGCVTRDPRKVERKKHGHVKARKMPTWVKR |
30S ribosomal protein S10, mitochondrial | JJ | 268 | Algoriphagus Machipongonensis | MIIRPVVRSLQGRAPLATLRSAQSVFQPLPQLRRNASVTTGPDAASKASTTPIARITTTTEAPKDQKKAKAAAAAAAEPEEQEVIMSRMPRSLEALYLQPLRREAEYGVPSCDLQLRSYSIRNLEFFCDFALRAAYYLGLPAFGPVPLPRMIERWTVPKSHFIFKKSQENFERVTLRRLIQIKDGHPETVQLWLAFLQKHAYYGIGMKANVWEFSKLGVSKAMDESKSEVEKLLETRWEHLSHVSDMKGVGNFEDFLAKERLRISGGR |
Translational machinery component | KK | 376 | Algoriphagus Machipongonensis | MAGQIDPIRAELVGWTPRVPRNLLASLPPLGRKTAPKLPQNISFSPPLSAHPCYQCQEKCLPHRRPVSWSPLILQRCRLRCLPRGHPLKISRTFELPVGERDGSHPLTAFARAPRTTEPRSLHYLYDSLPPTPALCAQLLFHQLIQGHFSFVVHPTVATAPRSIWPAKMSRFSTGRLLAQNLFQAFNKPVFPSATPVWTRAFSQTAARRDADSESSAKLMESLTRGIVGMAADPTDLTGDKLATNIGLRDTEDEPYHFHIYSHKHNTHITVTKPNRDALISLSCGNLGFKKSNRKHYDSAYQLGAYVVDKMHQMNLHNKIKKMEVVLRGFGPGREAVIKVLLGNEGRMLRSSIVRVSDATRLKFGGTRSKKPRRLG |
Ribosomal protein S12 | LL | 174 | Algoriphagus Machipongonensis | MATTFLRNLFSQAQPSLLRRPLMPSSSSILPAAARLFSSTPAQNATLNQVMRGCRKPQRARHAVSPALSSIKSPALKGVCVKVGITRPKKPNSGERKTARVRLSTGKVITAYIPGEGHNISQHSVVLVRGGRAQDCPGVRYHLVRGALDLAGVATRMSSRSKYGTKKPKKASVG |
Probable ribosomal protein S13 | MM | 119 | Algoriphagus Machipongonensis | MVFILGVNFNEHKLVQKALESFYGLGQQASARILAKYSIHPRAKMGTLPPKIVTALTAELSTMTIENDARRLVLDNIKRLRDMGTYRGRRHAMGLPVRGQQTRNQIANARKLNKIERHG |
Mitochondrial 37S ribosomal protein MRP2 | NN | 113 | Algoriphagus Machipongonensis | MSMFRAKKLDLGCFTNVRVLRDHSKRKAFLEAEPERQALRYVIRNTTLPARTRAVAQLQLTQMHAYTRPTQIRNRCILGGKSRGILRDFKMTRYNFRMNALMGNIPGVKKASW |
Related to ribosomal protein S15 (Mitochondrial) | OO | 320 | Algoriphagus Machipongonensis | MPPRLPGPQGLRSLTLCLRPAVASPAQALQPLIQTANISQKEKKRKMKQDPYGWAQAQQRKAVNVKRQAELQAQRDAAWGDPVKGITTPFVESFDSAGQASVSPPKVGPDGQLVEEPKPLPTSPHLRNYLLNKDEFDSAIQYAEHILKPIKAEDRLTADPEKEDEEAREHAARHAKAVAALERIAKLEHGGAKDRKHANIRRCIETFGRHITDQSLERPTPPLARGVEPKPQPVRAGPDTGSSEVQIAILTSKIRALSKALEGHGGNRDKNNKRSLRRLCHKRQRLLRYMERKERGSGRWHHMLETLGLTPATWKGQITL |
bS16m | PP | 107 | Algoriphagus Machipongonensis | MVLKLRLARFGRTNAPFYNIVVAHARTARNSKPLEVIGTYDPVPKKDTYDTTGKLHKDIKLDVTRAKYWIGVGAQPTDTVWRLLSLVGILDPKYKKPQPAQEQKTKA |
Related to ribosomal protein YmL11, mitochondrial | F | 347 | Algoriphagus Machipongonensis | MSLRLSRPAVRGLGSAIKSSRISSRSAALLVPSTSTSAFSTASPQRAAAAGHLRLPDDYVPPTQPPSARPVDTRKSQLLRTYTSMLRSTPLMLIFQHNNLTAIEWAAIRRELSLALSNVPVPEGAPDITSKIHLQVVRTRIFDVALKTVEFFDPSTVEPTTATTATGTKVPATYNHDLSKHAWKAVKEATKNTEAVEKTVYGQLAPLLVGPVAILTLPSVSPAHLGAALSVLAPSPPAFPAPSRKKNPGYYDLTCQSGLQKLLLVGGRIEGKAFDYDGIKWVGGIENGIEGLRAQLVHMLQSAGMGLTSVLEGAGKSLWLTMESRRSVLEEEQNPKKEGEGEEEKKE |
uS17m | 165 | Algoriphagus Machipongonensis | MASTIAAATKVSRKMFRELHGVVVTSGLIDKTVKVRVGGQKFNKFLQKHFDDPKQYLVHDPNNSLRAGDVVAIMPGFITSKSKRHVVKHIIAPAGTPIEERPPIPSLDELWDAKDAAKAAKKERKVLREKMQAAEEAIELAERMARHAVREIAMREKIISLQKVD | |
Ribosomal protein S18 | RR | 256 | Algoriphagus Machipongonensis | MSSSRQFLSSALRQCRAAGQRTAQFSTTSPAAAIRDIPTTSFQNAPRTNTNTSSPSSNNNNNAGSSQYKSDMFNLLNSGAGSRGGRDSYNNARDVDGGQRYGSNSQKVQELLQSEVTSNNYMRMMRRRWNNGDVYAPRDLSPYEMKGRNGGWVEAADVVDELGFSPLDNYRNFSLISDYITPFGRIRHSKETGLKPVNQRKIAKMVRRAIGLGIHPSVHKHPEILKNSNGRHLLPLVVPKGQKANKTKNFDGEDEN |
Ribosomal protein S19/S15 | SS | 91 | Algoriphagus Machipongonensis | MQPTRVLFKRSVWKGPHIVPLPIQRPEPGKKIAPIRTQARSATILPNFVGLKFQVHNGKDYIDLTVTEEMVGHKLGEFSATRKPFIWGKKK |
bS21m | TT | 236 | Algoriphagus Machipongonensis | MELRSALQSVCRTTAAAASASARSSLAGRHAFSTSARFQLQPPPNPYVSGKSRIETLRAALSNRKPAAGAAAGGSPGATSASSALPPRPPTANDSPWSIVDAINKDSNSSTSSSSSSSSSGGALYSSSKPSPMQTWNETDFETRHMAPQQELNIRLRPSTGRTFYVSGHQDFAGALKLLHRTVAANKVKKDVRLQRFHERPALKRKRNLRERWRARFKEGFKAAVNRTFELKNQGW |
37S ribosomal protein S25, mitochondrial | UU | 253 | Algoriphagus Machipongonensis | MGKGRIFQAAKVYQRASEAAATNIVSGLPPRNPPLWLKAIESIPPAEINTRPYPIQHSPPNPRARKPRNLFRPTKIVYPEDELRRDFYRDHPWELARPRMIIELDGKDARFLDWSKGLRQRGIPLSGERHGNWMLTRIANDSVVQRQLWLMENQGMTKQEAYDKARHEFYKLRQLEQMERRIAVEEARMVGGYFGKDLLTVGMELENKTYESWKKWATTEIARQESARASMYTNVVDNSALEESEEDELLAQN |
mS26 | VV | 316 | Algoriphagus Machipongonensis | MAPTLARPSLSGVQFILSSPTTTCAATSVVTRAIAARSFSTTRSARDSVSIPPDSPNYIKVPEPPQSSEVRHPFVKGHLPIPRSIFPKKGVPEKVQSGYVNRIAPKSAAELAGLPPKSKQESWRRKMAEARRQSLEAGLQGLWQRKVKRDQKQAKESKARYLANKRAAQAPERLDEVFTRATIRESTAKNTFVPLDPEAFVKAEEARIKHAEKEAMKSEARRDAVVQLYVASKNFIVDEKELEEHVNKHFTEKIHNAGLWESGRSIWDSQKNPISMRELRNEFSGFNDRVTATTSAAVKTTVRQKNVAEELTGGKL |
mS27 | WW | 396 | Algoriphagus Machipongonensis | MAGRAPQHALRVGCRAVPEALSKPAQQSRCLSSTVPRQATYPVVSFNKTSSPELKEALETLREKVILPTYLPPELRQKIFNKKYEKELAHDPVTIQIDGQPQRFSYINMLTDMPNTPKNIRAALLSMKNGGDFANLSGLLEGMHRANRKLPYWLSAQIVRKACKAGHLQLILNMVRDVKRTGFTLERHETVNELLFWIQRFAWKSDYSEPETRKALREVQEILDALEGDERHMSKDRKRQQALTRFPYHRDPQFLAARLNLTAELAARRAVTGQTSEQQLNSANDVKNLVKYAEQLVRLWPADKALLDMYTDEAYVARVDLRYLIKPQVHLRYASFTLQALKNAAKIVGQLGHGPLAAQLINRAAAVEAESQLAYAKVDDGMAGQKIYEMVVGGKK |
Mitochondrial ribosomal protein DAP3 | XX | 469 | Algoriphagus Machipongonensis | MSASNCLRCLVRPSAVALVPRQMLQVGGGSLTFTATAATKGASSANTGGRQNANRPQKLRFKKTKKKNVVSSGKPPLPGERKAYRKKIVLSNNNALPVPGLETLRPNDLAKQDNVGSVKALPEDVVDALRAMEAFKPTQCWGIFRQPSVLIRQETVDLTKKMKAAGADGKTIRMVIEGNRVTGKSLLLLQAMTHAFMNDWVVLHIPEAQELTTAVTEYAPIENSPLWTQPTYTLKLLQSFKRANEKVLSRMNTVYSHADLPQIIPVNSPLLQLINSAKEADGAWTVFQALWRELNAENVPGRPPILFSLDGLAHIMKVSDYRNPAFELIHSHDLALVKLFTDCLSGATVMPNGGAVLGATTRGNSPRSASMELAIAQREAEKAGEKEVPQRDPYSKKYDDRVEAVMKSVEILRLKGVSKTEARGLLEYWAASGMLKKRVDESMVSEKWTLSGNGVVGEMERASLLTMKA |
mS33 | YY | 108 | Algoriphagus Machipongonensis | MSVPRARLLQLVKARCELFSTTFNPEGIRTGNKILRQRLKGPALATYYPRKNVGIRELQKEFGTLGLEVDDEVDDDRLEHLAALRARDKGAPKKKRTAPSAADAKKKK |
37S ribosomal protein S24, mitochondrial | ZZ | 382 | Algoriphagus Machipongonensis | MASSANALRLGLRTCSRPTQTSNLRIAALQRRALSATATRCEGVPVPKREDDAKLEFTRPYNPGEFLSEKLRSDDLQDWERERYERALTSWEQTPDDLKRGWSTMIRDIEQAAAPLRRVVMPRRSTFWYEEEKDTDLITNEDGEDDFHENDIMSLGHGKLEEHREFREYARIAVWEMPLLSKYAKPFVPPTSEEVLRFRYTTYMGEFHPADRKVVVEFCPKDLRDLSEVQQRKLMKLAGPRYNPEKDIIKMSCEKFEHQAQNKRYLGDLIEKMIAAAKDPKDTFEDIPLDTRHHTFTKKISFPKEWLLTEERKKELEAARQQALLKDAEKVVQGALVDGADVVKQYLESGAAEALHAVPVMAGRGGKALPGGKGGKMQRSKR |
uL11m | G | 158 | Algoriphagus Machipongonensis | MSKAAKGGAGGVEQVVKLIVGAGQASPSPPVGPALGSKGIKSMDFCKEFNARTAHINTGTPMPVRVTVRPDRSFHFDVRTPHTSWLLLNAAEAPIGKGGKRKGASNPGKEVVGTVSLKHVYEIAKIKQSELRLSGLPLEGLCRAVIYQARSIGINVIP |
37S ribosomal protein mrp10, mitochondrial | 11 | 90 | Algoriphagus Machipongonensis | MPNKPIRLPPLKQLRVRQANKAEENPCIAVMSSVLACWASAGYNSAGCATVENALRACMDAPKPAPKPNNTINYHLSRFQERLTQGKSKK |
DUF1713 domain-containing protein | 22 | 344 | Algoriphagus Machipongonensis | MIPQSVRRVVAAAPQSPVVSSLAASSAPRAGASYILSSYQPNALQKRRYSSSKPSSPDDGSSRAFAARASVPAAGTSKTPGEKRKRKAKEPVMPPLPSVPSTRHIKDEALALSTFFALHRPISVTQLLPKTVTEESFAEIFNHRKGHKATDVLSTLSQAVHDLESPMSGLRLSDNDVEDGSTKISLKHPDGTESDVYFQLNSMSGHFLPFNPPPPPEPIAEVDEAAAEAEASAAIAEEIAATAEQEPETRVYKAVVTIEETRDTNGQYKIMAHSPQLVEDDAVQPRSFLERLALRQIRYEEARQQQGIMHAISVRRQKKLKIKKKKYKKLMRRTRNERRKQDRL |
Protein FYV4, mitochondrial | 33 | 236 | Algoriphagus Machipongonensis | MKSSLRIQSTLGLLFRPCAVSAPATAPGLNAHARWAHKTAAQLPLIPKPTPFVPDVPTFLTLIGRDLKQHADKFPTWEALFTLTTDQLRELGVEPPRARRYLLRWRQRFREGKFGIGGDLKHVENGVAYLKIHEKEASPTRTSRRVVNVPANQHVEEVSEGERVKVKGYKVKGVSTIVGPYALPVQKGVAKLAVTEGMWEDKRGHKVDGGERRRAEVRFKRGVAERKALREKMGFY |
Manganese and iron superoxide dismutase | 44 | 310 | Algoriphagus Machipongonensis | MIGSMGLRIPRATSSLLGRAVNAVATNQSAVAGASIAAQRRWQHYLMPLRDNFEQEGIRNFLSPGSVNMAYTEYQTFILEKLNALVVGTDFEQKDTKSIVLATARDPELAHVFNHASMAHNNHFFFDHLSPVPVKMGDKLFYHINENFGSVDTLRDEMIGTAVSMFGPGFVWLVRTQLPGQPVALRVMATYLAGSPYPGAHWRRQEMDAQTSIGSSPQGLSNGQRFFERSAAGFKGNKLEPTAPGGTDLIPILCLNTWEYAWLREYGTGVGGMGGKLAYAQSWWNMIDWAKVEEEARLETRILTGGDSSV |
Manganese and iron superoxide dismutase | 55 | 310 | Algoriphagus Machipongonensis | MIGSMGLRIPRATSSLLGRAVNAVATNQSAVAGASIAAQRRWQHYLMPLRDNFEQEGIRNFLSPGSVNMAYTEYQTFILEKLNALVVGTDFEQKDTKSIVLATARDPELAHVFNHASMAHNNHFFFDHLSPVPVKMGDKLFYHINENFGSVDTLRDEMIGTAVSMFGPGFVWLVRTQLPGQPVALRVMATYLAGSPYPGAHWRRQEMDAQTSIGSSPQGLSNGQRFFERSAAGFKGNKLEPTAPGGTDLIPILCLNTWEYAWLREYGTGVGGMGGKLAYAQSWWNMIDWAKVEEEARLETRILTGGDSSV |
mS45 | 66 | 348 | Algoriphagus Machipongonensis | MPPRIPNAPSSLLLQSSACSGSSSRCTASRLPTWASSCSSSSPQSSQPTTHQQQCSSFSTTAPAHVQSVRRQKMFSWLDKKGSAYKEHTRQGPNLLGGQGKDGLAVPFPNNPYFKSQPVLSEGSREIIYQDVMEKGLPIKAVSAKYNVDVRRVAAVIRLKEIEKRWIKEYKPLARPYARAVMKMLPQTVLGGPDQKPHESINDVHVHSYTTQQLFVPVSESREFTREDAAKAFGDHILPVDKKLRVPELIEFQKDLLKEVPLQEANRKFLNATAASEAKIAEREAKRRQAVEDAITRVKTDRFEFRFQEFNAENVGHDGRDRNAVGWRYGVPFPDRKRSQIKIPTKVE |
mS46 | 77 | 414 | Algoriphagus Machipongonensis | MNRQVVTSTLGRRGVASTILNAQQQQRPFSSTTTRCAAEDDSKKPAAAPSTPRAAAPGPISASRQKSEAAVGKLTQLRGSFTSLTNDNSFHKTLPAGARDARRLAAAPIAGKGAGAGAVAPLGGGGGASGAPKVINVRSLKGTLGSRGSNNIPGAVAPGAALRPRFAAGPGAAAGRPRFGAAASPGAGPTGAARRPPFGARRARPAGDKKRSGGSGDKRPRGDDYDAPPTEEEKAFLRGLEQGKVTEYVPKLTPDTLLGYGPPVATDAALGKVESAMRTMRILGGGLPFNDQSGVTSDPTAIKHRYVHEKKPVFFSSVEEKEWVRESLDKFAVSEGPEKKTKQKILETSVLGKYEEPKYVESLTETVKMVEKYQGGTFSYAPSDADKFNKKLNQLLAAGLPRAAPAPAQAQKKA |
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial | 88 | 508 | Algoriphagus Machipongonensis | MLVSKSIASRAGLASAVASRSCRPSFTAMPLRAKVLGQQAPISTQAAAELFKPVEGDEPEDVLFNSLYNLRSVELNRPAKYNALNGSMIRKIAPRLLEWERSDMANVIVIKGSGEKAFCAGGDVAALAKQNAEGPEGVKKSVDYFGLEYKLNHLISTYTRPYVAFLDGITMGGGVGLSIHAPFRIATERTVFAMPETKIGFFPDVGASFFLPRMPGQVGPYLGLTSALLKGVQVYYAGIATHYLHSSSLPALESRLAELTPRDYWTIEQRLSVINDTIEEFSTGVPYDENIEIGGKIRLAIDRCFKYDKIDEIIAALKEEAAEGAKGGVQSWAKNTLEELTQRSPTSLHVTLRQMRLGKSWGIAHTFKREHQMAAKFMKSHDFNEGVTALLIDKGANGPAKWKPASLDEIPPGANISEDYFRNDPEVPVLELLNDRSYMQYPYNKFGLPNDYDVKEAIEKGNFTREKLIDHFVETRRGKQGVREAVSDVLDRMAVRSKGTEHVQWKKE |
IF1 | 00 | 95 | Algoriphagus Machipongonensis | MLRTTVSKLARPTVSRAFATTSRALAGETGAPPKTGGPGDAFQRREKANEDFAIRQREKEKLLELKKKLAEQQKHLKTLSDHIDEITREQGGERN |
IF1 | 99 | 95 | Algoriphagus Machipongonensis | MLRTTVSKLARPTVSRAFATTSRALAGETGAPPKTGGPGDAFQRREKANEDFAIRQREKEKLLELKKKLAEQQKHLKTLSDHIDEITREQGGERN |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
16S rRNA | aa | 1864 | NA | GAUGUAAUAAAAAAAAUUUUUUUUAAUUUUAUAUUACAUCAAUAAAAAUAGAUGAGUUUGGUGAUGGCUCUGAUUGAACACUGUCCAAAUACUUGACACAUGCUAAUCGAACGUUUAAUUUUGGCCUAAGAAAGGGGUUUCAUCGUGGCUUAAGCUAAGGGGUUUAUUGUGGCUUAAGCUAAGGUUUAAUCUUUGACUUAAGCGGGUGUUUUAGGGGAACUUGUGCCCCUAAAACCUCUUAAUUAAAAGUGGUGUACAGGUGAGUAUAAUAUUUUUUCGCUUAACUUAAAGUGAAGGCAAAUCCUUCAUAUUGCAAAAGGAUAUCUUAGGCACCUGUUGAAAGGGGCCUACUUAUAUUAUAUCCGCUUUAAGAGGAUGAGAAAAGUUUCAGAGAUAGGUAGUUGUUAAGGUCAUGGCUUAACAAGCCAAUAAUUCUCUUAGUCGAAGCUGAAAAGGCUGAUCGACCACAUUGGGAAUGAAAAAAUCCCAAGGCAAAUAGGUACAGCAGUGAGGAAUCUUGGUCAAUGGGCCCACGCCUGAACUGGUAACUUGGAGGAAUGAGGGGUCAACUUUGCAAAUGGAUGAGUGAUCGUUAGAAGAUCCUUAGUCCCCUGGUCUUCUUGACACAUGAGGUAUAUACUUCUAGUCCAUAUUGGGGGGAGACUCCACGUCGAUUUAUCGAGUAAAAUUCUGUAUACAUAUUGAUAAUGACAAUAUGUACAUUUGUCUUGACUAAUUACGUGCCAGCAGUCGCGGCAAUACGUAAGAGACUAGUGUUAAUCAUCAUAAAUAGGUUUAAAGGGUACUCAGACGGAAAAAUUCGCCCAAAUAUAGGGGACAAUUUUUCUAGAGUUUUAUGUAAGAAGGUCGUACUCUAGAGUGGAGAGAUAAAAUUCUGUGAUACCUAGGGGACGGGUAAAGGCGAAGGCAAUCUUUUAUGUAAAAACUGACGUCGAAGGACGAAGGCAAAGGGAACAAAAAGGAUUAGAUACCCCAGUAGUCUUUGCAGACAAUUAUGAAUGCCAUAGGUUAGAUUUUUAAUUUAGUCUAUAAAUGAAAGUGUAAGCAUUUCACCUCAAGAGUAAGGCGGCAACGCAGGAACUGAAAUCACUAGACCGUUUCUGACACCAGCAAUGAAGUAUGUUAUUUAAUUCGGUGACCCACGAAAAACCUUACCACAAUUUGAAUAUUAAUAAUAAUGAUAUUAUUUUUUAUGCUUGAUAUGGCAAGCACUCAAUUUUCCCCUCCCCGUAGGUUUGCCGCGGGGGGGGAGAAAAAAGAAAAAUAAUGGAUAAUAUAGUAAAUACCAUAUUCCAACUAUAUUUAAUUAUUAAUACAAGUGUUGCACGGCUGUCUUCAGUUGAUGUUGCGAAACUGUGGUUCGUUCCAUGGAAUUAACGUAAACCCUUGCUUUAUUUGUAAAUAUUAUAAAGCAGUUCACCUUUAUAUAGGAAAUGAUAAAAGGGAUCAAGACAAGUCAUCAUGGCCUAAAUAUUGUGGGCUAUAGACGUGCCACAUUUUCCUAAACAAAGAGAUGCAAAAAUGUGAAUUUUAGCUAAUCUCAAAAAAUAGGAUAAAAAUAUACAAGGAUUGUAGUCUGAAAUUCGACUGCAUGAAUAAGAAAUUGCUAGUAAUCGUGAAUCACCAUGACACGGUGAAUAUUCCCUCGGAUUGGUACUAACCACUCGUCACAUGCUGAAAGGAGUGCGUGCAAUAAGUUUGCUUUUCUGUUAUAAGUAAGUAGACAUAUAGGUUUAGAUGUUAUAAUAGGAUCCUUCGUAUGCGCGGCUCUGAUUAGUGUUAAGUCGAAAUACGGUUCGUGUAGUGGAAGUUGCACGGGACUUAUCAAUGUUGAACAAUACGA |
P-site-tRNA | bb | 73 | NA | GGCUGAGUAGCUCAAAGUAGAGCAUACCGUUCAAAACGGUAAUGAAUGUGUUCGAUCCACAGCUCAGCCACCA |
mRNA | ee | 11 | NA | AAUAUUUUUGU |
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-04-30 Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.