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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6YWV

The structure of the atp25 bound assembly intermediate of the mitoribosome from neurospora crassa

PDB DOI: 10.2210/pdb6ywv/pdb

Classification: TRANSLATION
Organism(s): Neurospora Crassa Or74A

Deposited: 2020-04-30
Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.03 Å

6ywv
Literature

The structure of the atp25 bound assembly intermediate of the mitoribosome from neurospora crassa

Amunts, A. , Itoh, Y. , Naschberger, A.

Primary Citation of Related Structures: 6YWV


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L20 A 225 Neurospora Crassa Or74A MEASLSLFRPVATCCRRVALSSSSSSSQKAAAVAGISVRYQSTANRTKRMLNIPPHESFLNVPVEGDRIIFNPPSSEASVYHTPFKFLPRSDPRRRANIYKLFKPPQAPITTPESSSTDAAAADQHGDLPPVLYNPTKSYNVTPEQVEEIRELRAKDPKKYSVTYLSNKYNCTKVFIMMCTQAPREHQEQHKLARARTAENWGPRRAAAKLDARRRKEMLHRGEI
Uncharacterized protein I 218 Neurospora Crassa Or74A MICRTCLRRASGFARPAAAAATRPMVAASSRAAFSTTFSVCTPPAATPAAAAPATSTAEAGLAPVPGAATTEQAKAAISSCPAGTKLNGLNYFKNKADPVALPDEEYPEWLWRCLEVQKKTDDAADADAGDEFSKSKKQRRLAMKRARAQEAKILASGDLEALAPKIPLQKQSVNLPGAVNGGVQDAVLADEKREELRKAMRKERKAKIKESNYLKAM
50S ribosomal subunit protein L15 J 312 Neurospora Crassa Or74A MPPRLPLAQAARCCQASLTARPSVPASSPTSSLISLFAALSVQTRSASILASLSDNRGAYHKRIRKGRGPSSGYGKTAGRGTKGQKAHGHVKPWFQGGQTPLIVSHGRKGFVNQFAADMSELNLEKLQEWIEAGRIDPTKPITPKEIIKSGIIGSSIKDGIKLLGRGKESFKIPVTITVSRASASAIEAIEAAGGKIVTRFYTKESLKRLVEGKSLHTDKPLPVGKEHVEEILAQARSLKKKYYRLPDPTSRWDIEYYRDPAHRGYLSHQLAPGESPSLYFKVPTGGEKVKVVRADKVKASKTGDVASEKLF
60S ribosomal protein L16 K 249 Neurospora Crassa Or74A MKHNASSALLSAFQGLRISSSATPFRAASLATSAVRRPIAPTPVSVASHVRLFSATAIQAGSWLEPNLNRKKKMMKGRPRVPTGGSTKGTTVVWGDYGLRMRDHHRRISAQQLKLAEDTIKQRLRGQKYRLYKRVACNVGVYVSGNEMRMGKGKGSFDHWATRVAVNQIIFEIRGQLHEQVIRDAFRLAGHKLPGLYEFVKKGDPPVVGITKLEDGLTVEDLKNPRKKLLMPEITQSAASTSSTAAPPS
50S ribosomal protein L17 L 193 Neurospora Crassa Or74A MAGAHVKYRHLSRSSAHRQALLRNLVTSLIKNETIHTTYPKAKEAQRLAEKLITLSKRDTETARRSAQGILYTPDQLLPKLFGEIRERYANRPGGYTRVLRTEPKDQYSQAPSAILELVDGPKDMRFAMTAATVARDREQKTESTDLTKKNMDKVTRFRKDGMRAFEDMVASLRDMKFTAGAINPKEWKKLDR
Mitochondrial ribosomal protein M 258 Neurospora Crassa Or74A MNVTASLSRRPLGCLKAGLCQSLIRGYATAVAASTTQSTGALPDHNFFRIADKHTKKTRTAFAVFTPPKSPTTLPPSSVVTKSKAFKIANSKLPPLMTKPPSDPMPLLTQQQIARMDPTGARTALFSKARHAARVGDVLMVTHRRGGEPFAGVCLAIRRSGIDTAILLRNHLGKVGVEMWYKIYNKNVAGIEIIKRRAKRARRAKLMYMRQPKHDMGSVEQYVFAWKKMRKVLSSKGLTGGVGGGGGKQKGQESKKKN
ATPase synthesis protein 25, mitochondrial N 699 Neurospora Crassa Or74A MSATPAVLRASACSACRFSALRLFVSSFASPRAPLPVARTRVLSPTAPYSTFRPSPRLLASPSSEEHAEPAAQEQPNKTEDAQAEASTEANNEGGADVPWYLQVDAPTHPTLVHEPPPLPDIPEGSPKLMEPLVKFVSDELGMDDLKLLDLREIDPPPALGPEVLMLFGTARSERHLHVSADRLVRWLRNRGVTAKADGLLGRNELKTKLRRKARKAKLLGTTGLPSGADDGITTGWICVNLGTLGWSDMEMEFKDEKGVTSGFGVPQSGTTLVVQLMTETRREELALEKLWSGILRRSLERQDKIAGKLPEASFTTSPDTVSGQSFSPSPIRSSGRNRKRPDRLYFSTSARQHAAAVDVSQTDLATAMAGWEYSNASPSTIDNLLAQDTDSKVQLLIQMQEYLSSLPRDQALSAVSLCEDGSPSTFMRLFNRAIENLPSAQAWEARLWVEKAARALQHPDHDLARLGDLIQEMKLSGAANVSREKFVDLLRMIFAIPETTDAGVRQQASLSMDVIDMLFSRGEKVIEYDVVVAVIESLLQTRARPPEARRLLSQFEDLLSEAQMDCPTEDEIIRLLDVYANHRAWDKFWNVWRVFPRHCERRTERMYTKVYERIAAEDHQGMATDALRWCVEEMWHEQPPVRVTAAMLKALEACIRIADPEAESLAKDIDDRISDAQYMDREFVRLWLTLHGSAAWGA
Mitochondrial large ribosomal subunit O 364 Neurospora Crassa Or74A MSLNVPSRRLLKSAPSSANALVPALQSLSINTRSIHTTPSQQWSLFGWGKQKVEERNKVKEELKQSELARTRKPTQEEIFERVRGRLEGDSIFADTTPSSQLAAEQDKHKDWATASAEKKLAAAHAKDQTPTGISLKKDHLVRVVDPDPRSRVRWERKMVIRKLQRGTDPWSVEPKAERIARTERKLVYKTGYLPTSVKKLVHLSRQIRGKTVSEALVQMQFSKKKMAKEVKTELLRAEAKAIVTRGMGLGKAAAAAAQKETGAEPVKIQTKDGKHLEIRDPTRIYVAETFVNKGFTRGVELDYRARGRVFKMNKPTTTMTVVLKEEKTRIREHQERVAKKLRQGPWVHLPDRPVTSQRQFYSW
Mitochondrial ribosomal protein subunit L23 P 228 Neurospora Crassa Or74A MASVAKTGAEALRNAPFRVGKKQIFLPNHVITFVRPLPKQPPNLATFIVPLEFNKLDLRDYLYHVYNVEVTGVRSFVNQRMHEQRHGDVGNWRRPKSQKMMIAELAKPFVWPKPPAEDAREAFDYAMWKKQKTAQEQDTKFQGIRAQGEVVPPSQFEVTKDRKAIKARQSKFLSGEETWAPGKVNAFLNSKIVPEEEGWSEVEENLPLDESAESAAEESSSKGSETRQ
KOW domain-containing protein Q 396 Neurospora Crassa Or74A MDKLLRRVRMAEGMVARRAQRKNALLKRITERKQNKKNGEAFTEAIQQRKAAVEARNEDWMLGPLAPRRELDEITLSNGNFFGSLSPTRALLESEVSEEERKARVAWCGSPKFLCIAPGDRVVVIEGHHKDLIGTIEKLNTRNMTVEIQSEKLKTNTTVPQFMQNDADKPVTQIYARLPISSVRLVHPLKDPQTGEYRDVIIRELRPRNIVHDRPTRTRSMRRFVPGENIIIPWPKQEPIKREDQPADTLRIDVDEKTFVPTLFRPPAPQQVLDELRNKYSIFRTRHTPEYIAKKEQEEQEKEAKKSAAKAMLTPVQEYNRKQRELRRARGQPALTEEMLAKIGEVVARNKLGHHQAPKVKEETVAQIEKAVEQLSLGGGQEDAATTTSPEQPKVV
Uncharacterized protein R 447 Neurospora Crassa Or74A MHLAQLRQPLTRAAANSCHSVCRLPTTHSSVSATAILSEQFAHLRIGPSSSNVAVEGRRYASVKAQGAYRLKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQLHPDRQYIGVVFNRNDKLPYPKDAPRKRKLGLVAVPRKVEEVEKPTMSASGLPLFVTRHETIEIPPPAVTTPAAAGKAVKGQGARVSASGAAAVPASSSTISASASSNSNNGGSSVIAELIKEKLAARAEYNARQSALRKLQQQKMLARRGTRVLRLMNNYSYRETNWEIGRLIGDPGSVPGTEKVGSRKAKFRARRRRRNTFLLGIKERKLAKADRREEYRRRVREKREQRLVQRKEFLAKQREAKKAREGGAAAEKSEKKEVKAEKPAAAAPKVEKPKAPEAAKKESKPKVEEKKAAAAEPKKDSKTEKKD
Mitochondrial 60S ribosomal protein L25 B 162 Neurospora Crassa Or74A AATVKQHVQLALSLPPRLRTFLARYPPASILPAGADPETHKTPYQEESPNPFMPTKHPITGKWHNPKYSLRRQAELVKLAQEHGVEELLPFTRKLNEEKLRKRVELGLRVKGTGVGEKVKGHKHERTLVAKMEKRREAMLAMPDLIREWKKVGKRNWTKFPK
50S ribosomal protein L24 S 274 Neurospora Crassa Or74A MSSFLVRPFCLRATTTTTTTTTTTALVQQQLRALTTTTALTYHQPRVPSSAIPIPNVSGRVPLPDSTPVPEDFKIEIPSYPYGPRRVYHQSNTGLYGSALIRFGNNVSKRNEIKTRRKWRPNVQQKRLWSKSLGVFVRTRVTTRVLRTIDKVGGLDEYLLGHKAARVKELGPWGWMLRWRIMQTPEIRERFAKEREALGLPPRREEDEEKSLEEQLREFQVAGIQFAEGKAPKTKGQLKEEADRLIKKSETEEFGLGQEEDLFMKEEPKPTKMA
54S ribosomal protein L4, mitochondrial T 263 Neurospora Crassa Or74A MASPAALRPSMGAIMQTCRSAATAPKVAVAVPVRALSTSAALLKRHKYPTARVTRDNSKQRGESALRKSGTRWKLSVSDEPLPEPVPREELPPIQVDENHGLWDFFYDRETVAMAPLEHTKHGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWERTKSELGFGLAEANERDRNVKQTMRGIKHVLTERFYAWEDAVKLAEQDPEIDLSNPENPYTPSTFLEAEETAEGAEASETQSTTTEIDPTTIPSSKSQAEAPRV
50S ribosomal protein L30 U 161 Neurospora Crassa Or74A MSFFRITLHRSAIGLPKRTHGVLAALGLRRRNQTVFHPVEPQFAGMLMKVKELVRVEEVPHRLTKRELKDERKPDAGFVVEKQVRRFIPGVGVQDEVDFSKVVEELKAQKVENVEGVEKMVVEGGAVVRDGKRAGDLGVRTRSDWEVIGKMKSVLPKVKAL
Uncharacterized protein V 219 Neurospora Crassa Or74A MSSKLPTTLLRRPSALPSTTTYTAYSASRPTPPSCTAHGAQGQQIRNATFVPRHRRPYQFTQLVQLSDGSTFTVRTTMPTALYKSAKDSRNHLLWQPSDKSLKNVELDEAGKLAAFRERYGRGWDLDAKMTPEEEAAAAAALAAGGGAGVPGGKAAKKAAEEALLAKKKKEEEEAAKKAAEAEEADPFDSLTDLISGYATENMNPGLNFKETRHYGKKK
Mitochondrial ribosomal protein subunit L32 W 129 Neurospora Crassa Or74A MAAMTAAAAAPAMRLFNPSTFFQTLRTQRFGVPALNFAVPAAAISLLPSIPSLLEDIWEGILRAVPKKKTSHMKKRHRQMAGKALKDVTHLNRCPACGNLKRMHHLCSTCLGKLKGFMDRNGGSNAKAY
Uncharacterized protein X 59 Neurospora Crassa Or74A MAKKAKSRIINVRLISMAMTGYFYTFTRPRTSLPMSMLKYDPIVRRKVLFLEQKRKGRS
Uncharacterized protein Y 140 Neurospora Crassa Or74A MSRIFSSALQAVFKPSAFLPKTATRSFSILPSLRPATLSSTPSTIFRAPNAITAPSASPSATTGIDGEVLDLLSASSLISSHPALSGLGSQIRCGPRPTMSGATRLVQKRRHGFLSRVKTKNGQKTLKRRLAKGRLRLSA
Ribosomal protein 0 124 Neurospora Crassa Or74A MSNLFRSLASSMRALSLAAPRATAVNTTKTVVSTHQTRCLSQGLLSRHICTPMCSHNRPVAVCQSAKNGLQSKQQSRGMKVHSAIKKRCEHCKVVRRKANKRQNGYLYIICPANPRHKQRQGYR
Mitochondrial large ribosomal subunit YmL35 1 449 Neurospora Crassa Or74A MSTCQQVARPLVRCLRQTGPGAATCSTRSVAVAAVRPFSSTPMRKEEGATTTTTTSPVDSTTTPPPLPSATEAKATVADTVVGGPELGSRRRRAALATTGNLPFEQLPYQCFQDARKILQQDRAAKIAQIVKETEKIKLIEARDASEFEGGEAAKQTRIKSLRKYIEELKILADINDPEVKRRFEDGRGDMTKPVYRFMAERRWRSMDYKIIAQRISQFHVVPDLLPAFDPTMDVKLSFRGYQVSPGAILDSRVTEVAPTLRMQVFDKGERLLTVVVIDSDVPDVTHDNFKRRCHFLAANIPWDPSKTVLSLRSVGDRVEGDVGKPWLPPFAQKGSPYHRLNVFVLEQKPGAKIDGEALKKHLENRENFSLKGFREKFDLEPVGFNLFRSEWDEGTAEVMERHGIPGAEVEFKRQKFASLKPPRKARGWEAKRQKPKYKSLWKYVKRIA
Uncharacterized protein 2 370 Neurospora Crassa Or74A MVSATKKPVSAMSAKNSTRHRKVSHKVTKTIATAKSQVISNKAMKIRTKSWKDMPSPKRRRRINAMVDELRLQGNVKMPKPGKSTYKAGGGERVRLVKAASTLPTPPLTPPVLSKPTGSASQSKGDLKPKRPTPEKKRSVSKRDVERFFLSTQTSTRRRENTPIHAPIMSSTFTSLRGLATRLFAGGARPSPSSLLLPNKPATAALPTAIQHQQTASYASKGKSGPPAGMFSGQKAGSKKSKGPKQVDPRIINILRHFAVLSPKRIPPPLRFGRNRYLRHWTIHRAWLLFRRQQREQRERILMQQHQSMSNACEELRNTEGPGTRETGYLYRVAMLKNGVYGLKSIPIEYASRALVETPGRQAWNHEWKR
54S ribosomal protein L31, mitochondrial C 110 Neurospora Crassa Or74A MFGAFRFTNPLSGGLLWKIPWRMSKFQKLRQRRRLRAVDNVVATIENALAKKGETVKAVERWRAEMPTEAEMLPKDKYTIFDRKEKRYRKGIHKLPKWTRVSQRVNPPGY
Uncharacterized protein 3 103 Neurospora Crassa Or74A MQPTRILQGLKYRKLRLTTKDVNKGFYKGNRTGSMGTHTSYGTYKIDYTKVRTYVCPDLTGFKLTPFVSKTIRPVHDQFPGDKLGPKNPATYLARWKSENGLD
Mitochondrial ribosomal protein L43 4 138 Neurospora Crassa Or74A MTVKALTQISSAGRNGVGAFVLQCKKLDIHYSDWAGSSRGMNGFIKSLLPKFAAANPQIEFVVSPRPAKHPILMGHYINGRTKAICVRNMEPLEILKKAELLRDASGEKPQKFKKPVTSTNPSVRGVWSPYHGQGMAV
60S ribosomal protein L3 5 439 Neurospora Crassa Or74A MKRIATPSLTSRLLVAARSGVSPATAAIRSRSAISVRSQSTAALAQHDASHDLNNDRFPPLEPLPPAAESLPSPLPERALTSAKLAALHARLNLSPKIPLQTLARTLVDASADENPQFNNANLAFVGQTLINYHIAEWLLCKYPRLPQGILFSAMKAYAGPKPLLQIARSWGVDTAAVPGGEVDPGLLQFDALKPGVAITNFGYKRTELAYLEKFKWRRGMASRVVLDDDFGDVVRSDPKVAADLEKAMEEQDQDKTPDEEEAEMVANEQDQDVSYDRYGNPDTRAAAERAHAYFVRAVVGAIYAHCGREAAKAFVKAHIMSRTLDIAKLFEFKYPTRELAALCAREDFEPPVARLLSETGRQSRTPVFVVGIYSGSDKLGEGAASSLDHARFKAAMNALKAWYLYSPGENPRVPSDMLEEGAKPWTPAYIDMGEVISR
50S ribosomal subunit L30 6 368 Neurospora Crassa Or74A MSASSRGAALLRSQQRSICLQCRNQTRVLAPAGVTSAPRRFYSAEASATATATATATTTTTLPPPHPPVTTSTGTHAATSTSSQIYRIKSGVILTRPPLLTRDLTPFEESFYFYQKRLNERLTAPFRKDFYFKKDTAADLDWRIKLKERHGVPAKDIGRYNPRGRMAWNDEVLVGSQTSSRKHMVEKLLADAEMRVSEDGEEIPAEDRVPVEKPMPRRTEADEKGDVKRLDRALDKTLYLVVKKKADKEGEEAKWMFPTGVVPTDEGLHETAARILAESAGVNMNTWIVGRVPVAHHVVRPVFGQKDGALLKKGEKIFFLKGRIMAGQADLTDNLHDLVDFKWLTQEELRSTLAEEYFHSVKGMFAER
Uncharacterized protein 7 165 Neurospora Crassa Or74A MFRSTFFGLSRAIVQPATPLTVRAAFQSRFYSAAAAASQPTTTATTTTPLQQQQQQQPTTQPTTPIQTQTGAAPTESTKPVAKPYLVGRAWTQRLPVYHLAKRGGNKKLTQIKKVQGDGQALRRDLAQFLGLEVKEVRVKVPTGHLEVDGHRREEIVKFLDGLGF
Uncharacterized protein 8 443 Neurospora Crassa Or74A MRRIPRIPSTASALCSSSSSVASTSAAPLRTLRAAADSSSICQSCSFSTQTSATRNRVWQNTVQTQRRCASTVTETTPEAPVAAAAAETATESTETVEQQRKRKGGFFETQRQVNLVLPGQPTRADAPEKIRDPNYEPATSGAGLQEIGGMSDWWSKPEHFRDGGKQFEYQGFAPQEKITDPRLLKVILRRALAEGLALKKFGANPKNPADMASIIGNGDHWQRTVSVEMCRGENGELSLKNESDLQKVWILMRNAAEKTYYQREWQEEINRLRSLGEKEQAKQLLEEGKKLGYRLKSEEGSLVKLTVDEAVELRKSWNNDWKEAIIRDPVVKFYAAKRIQKMTGHILSDGKLTSIQTVANFMDALVTPPKPKKLAEQIEQSSILPELPNVKVYPRRVTPVDKERMVGRWKVIQKELQKRELPVLGTGNHGKYVELKWLGSKQ
Ribosomal protein L13 H 183 Neurospora Crassa Or74A MSQTVGATRLAYSRVWHHISAVTPHPTLSTIKAPSEAITPPSLGRLASRIATILMGKHKPIWDPSTDCGDYVVVTNCAGLYTTGHKKWRKTYYRHNTRPGSLQAITMDALMEKHGGAEVLRKAVSGMLPKNRLRDKRLARLKAFEGDAHPYKENLVRFGGKVVGAPGWEEAVKAIREADMERL
RNase III domain-containing protein 9 267 Neurospora Crassa Or74A MAALTPSRSVFASTCKTIAQQCSRRPVAVQQLAAVPVARQVSSSSAVQQEQDASGTSSSQQPRPRWSYTPERMKGPGFSLNLVKDPRRKQWMVNSDPAKLDAFYDAFLGQGGSRMLSEETKWLAVTHKSFDYGRRGYNTRLAFLGRQIIALETTRSILTSPVLNEPIVDKYGRTPYNHAALANIDKLIYTQPLDIMDKTKIARMGIDFGLLTVMRWKPRMPEDLESSGVVVVLNSTLFAIIGAISLEKGAAVAQRIVREKILKRLGA
Uncharacterized protein D 292 Neurospora Crassa Or74A MNSVTTSTIGRLAFGVSRLSAVTNVAGAVRHASTHPTTAIPKPTTAVLKTSPLAEETAVELKSPSRLQLKSEPGNKGNPKGHGDRIWAFHHIEQGQVIYSTKPVISHQHLIRQQPFTGKNLVPRKIRKDYWRPLAMIELAGKDQGAVGRSVYQKLREFKKRHELDWANEAEEGRKLMHKSKRERGQELNDQKPNSVADMAAVLAGAGKGNLMWQVSRLGSSSELVGEIKKASGAVEKGAVVDVKRQLRRATVYWTNEQDKFHAREWSDNVSHEVGIPGEAEKKRMPIRMSSE
50S ribosomal protein L5 E 352 Neurospora Crassa Or74A MASLRGVSRSARALQPFSAQFAVRRCASTQTGAGAAAATPKSNIPDLAELETRSALDAPIPSEEDKKEFRPWKRAADRKARLPSSRYQYHPPKYNRGPLHPIQSPPSSDPIARDFVPGPFNMPRLKETFRTVMASDLMTLAYIHTPPGTPKKEPTERLRAWEGDSPYFANRARRAPRGAPELPIRERDISFRNIPEIKEITVSTFVPLGLKNPDLLIVARAVLLAMTGTMPEMTRSKNNVVQWQLQANKPAGCKTTIYGNAAWEFMDRLIHLVLPRIKDWKGVPASTGDGSGNVQFGLNPEDVQLFPEVECNYDMYPAKMIPGCHIAIKTTATSDRQAKLLLQSLGVPFYSN
Uncharacterized protein F 347 Neurospora Crassa Or74A MSLRLSRPAVRGLGSAIKSSRISSRSAALLVPSTSTSAFSTASPQRAAAAGHLRLPDDYVPPTQPPSARPVDTRKSQLLRTYTSMLRSTPLMLIFQHNNLTAIEWAAIRRELSLALSNVPVPEGAPDITSKIHLQVVRTRIFDVALKTVEFFDPSTVEPTTATTATGTKVPATYNHDLSKHAWKAVKEATKNTEAVEKTVYGQLAPLLVGPVAILTLPSVSPAHLGAALSVLAPSPPAFPAPSRKKNPGYYDLTCQSGLQKLLLVGGRIEGKAFDYDGIKWVGGIENGIEGLRAQLVHMLQSAGMGLTSVLEGAGKSLWLTMESRRSVLEEEQNPKKEGEGEEEKKE
60S ribosomal protein L19 G 158 Neurospora Crassa Or74A MSKAAKGGAGGVEQVVKLIVGAGQASPSPPVGPALGSKGIKSMDFCKEFNARTAHINTGTPMPVRVTVRPDRSFHFDVRTPHTSWLLLNAAEAPIGKGGKRKGASNPGKEVVGTVSLKHVYEIAKIKQSELRLSGLPLEGLCRAVIYQARSIGINVIP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-04-30
Deposition Author(s): Amunts, A. , Itoh, Y. , Naschberger, A.