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6R64

N-terminal domain of modification dependent ecokmcra restriction endonuclease (neco) in complex with c5mcgg target sequence

PDB DOI: 10.2210/pdb6r64/pdb

Classification: HYDROLASE
Organism(s): Streptomyces Griseoruber , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-03-26
Deposition Author(s): Bochtler, M. , Czapinska, H. , Sasnauskas, G. , Slyvka, A. , Zagorskaite, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.64 Å

6r64
Literature

N-terminal domain of modification dependent ecokmcra restriction endonuclease (neco) in complex with c5mcgg target sequence

Bochtler, M. , Czapinska, H. , Sasnauskas, G. , Slyvka, A. , Zagorskaite, E.

Primary Citation of Related Structures: 6R64


Proteins
Molecule Chains Sequence Length Organism Sequence
5-methylcytosine-specific restriction enzyme A A 152 Streptomyces Griseoruber , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GHHHHHHEFMHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG
5-methylcytosine-specific restriction enzyme A B 152 Streptomyces Griseoruber , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GHHHHHHEFMHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIALDYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKIHPGEYFTLIGNSPRDIRLKMCGYQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*CP*AP*CP*(5CM)P*GP*GP*TP*TP*C)-3') c 10 NA TCACCGGTTC
DNA (5'-D(*TP*CP*AP*CP*(5CM)P*GP*GP*TP*TP*C)-3') e 10 NA TCACCGGTTC
DNA (5'-D(*GP*AP*AP*CP*(5CM)P*GP*GP*TP*GP*A)-3') d 10 NA GAACCGGTGA
DNA (5'-D(*GP*AP*AP*CP*(5CM)P*GP*GP*TP*GP*A)-3') f 10 NA GAACCGGTGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-03-26
Deposition Author(s): Bochtler, M. , Czapinska, H. , Sasnauskas, G. , Slyvka, A. , Zagorskaite, E.