PDBi (Protein Data Bank in India)

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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6PPI

Kaposi's sarcoma-associated herpesvirus (kshv), c12 portal dodecamer structure

PDB DOI: 10.2210/pdb6ppi/pdb

Classification: VIRUS
Organism(s): Human Herpesvirus 8

Deposited: 2019-07-07
Deposition Author(s): Bi, G.Q. , Dai, X. , Gong, D. , Jih, J. , Liu, Y.T. , Sun, R. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.7 Å

Literature

Kaposi's sarcoma-associated herpesvirus (kshv), c12 portal dodecamer structure

Bi, G.Q. , Dai, X. , Gong, D. , Jih, J. , Liu, Y.T. , Sun, R. , Zhou, Z.H.

Primary Citation of Related Structures: 6PPI


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein A 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein B 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein C 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein D 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein E 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein F 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein G 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein H 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein I 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein J 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein K 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Portal protein L 605 Human Herpesvirus 8 MLRMNPGLGSSISVHPSELSISLFEILQGKYSYVRGQTLHCSLRNPGVFFRQLFIHLYKNALANCSYDHVLSDWRTYESSAKTRWPEKEAQWGSYRRSTFDSWAQTMRMTLDHLLLNAINRVLYAKTQLSYERYVDWVVTVGMVPVVKHTPDHKLVNSIQEQLMKDCQRLASGEKTIGRILTSVTQEISNLVSSLSALYIPGYSEVSIDYDCVKNTFVGLYKQKRVHVEVITMPAILAGRVIFDSPIQRMYTSIMSCHRTAEHAKLCQLLNTAPTKALVGSACNNVYKDIMTHLEQASQRTDPKRELLNLLMKLAENKTVSGVTDVVEDFVTDVSQNIVDKNKLFGTGQETTTQGLRRQVSNSVFKCLTNQINEQFDTITQLEKERELCMKRLKCIETQLSHQQPGDAKGPGSVNLLTANTFQSLGRLQDPSLQLTSSHIPSGSAVLNSFFSSYIPPVRESMKDLTNLWESEMFQTYKLAPVVDNQGQRLSVTYSQDTISILLGPFTYVIADLLQMELISHSFVSSSLQDIAAYLYQTSRLFVYITDVGQKYCLVTPPFENVPGKGPGETDWSANEYSCPEDSRVRRGLSRIPPPCGAPPCPGSA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-07-07
Deposition Author(s): Bi, G.Q. , Dai, X. , Gong, D. , Jih, J. , Liu, Y.T. , Sun, R. , Zhou, Z.H.