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FASTA Sequence PDB Format mmCIF Format
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6EF1

Yeast 26s proteasome bound to ubiquitinated substrate (5d motor state)

PDB DOI: 10.2210/pdb6ef1/pdb

Classification: MOTOR PROTEIN
Organism(s): Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C)

Deposited: 2018-08-15
Deposition Author(s): De La Pena, A.H. , Gates, S.N. , Goodall, E.A. , Lander, G.C. , Martin, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.73 Å

6ef1
Literature

Yeast 26s proteasome bound to ubiquitinated substrate (5d motor state)

De La Pena, A.H. , Gates, S.N. , Goodall, E.A. , Lander, G.C. , Martin, A.

Primary Citation of Related Structures: 6EF1


Proteins
Molecule Chains Sequence Length Organism Sequence
Proteasome subunit alpha type-1 A 239 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) DRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQ
26S proteasome regulatory subunit 8 homolog J 273 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK
26S proteasome regulatory subunit 6B homolog K 276 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) DSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK
26S proteasome subunit RPT4 L 271 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) LVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQK
26S proteasome regulatory subunit 6A M 262 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA
model substrate polypeptide S 15 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) NENVSARLGGASIAV
Proteasome subunit alpha type-2 B 250 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL
Proteasome subunit alpha type-3 C 238 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) SRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGIT
Proteasome subunit alpha type-4 D 234 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) SIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQE
Proteasome subunit alpha type-5 E 242 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAE
Proteasome subunit alpha type-6 F 233 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI
Probable proteasome subunit alpha type-7 G 243 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEIN
26S proteasome regulatory subunit 7 homolog H 262 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) SVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK
26S proteasome regulatory subunit 4 homolog I 271 Homo Sapiens , Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) MVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-08-15
Deposition Author(s): De La Pena, A.H. , Gates, S.N. , Goodall, E.A. , Lander, G.C. , Martin, A.