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FASTA Sequence PDB Format mmCIF Format
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6DZT

Cryo-em structure of nucleosome in complex with a single chain antibody fragment

PDB DOI: 10.2210/pdb6dzt/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Drosophila Melanogaster , Mus Musculus , Synthetic Construct

Deposited: 2018-07-05
Deposition Author(s): Yadav, K.N.S. , Zhou, B.-R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.99 Å

6dzt
Literature

Cryo-em structure of nucleosome in complex with a single chain antibody fragment

Yadav, K.N.S. , Zhou, B.-R.

Primary Citation of Related Structures: 6DZT


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 136 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 136 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 104 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 104 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MITGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 124 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2A G 124 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MSGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Histone H2B D 124 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MIPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B H 124 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MIPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
scFv M 265 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA
scFv N 265 Drosophila Melanogaster , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (147-MER) i 147 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT
DNA (147-MER) j 147 NA ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-07-05
Deposition Author(s): Yadav, K.N.S. , Zhou, B.-R.