PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

5K8B

X-ray structure of kdna, 8-amino-3,8-dideoxy-alpha-d-manno-octulosonate transaminase, from shewanella oneidensis in the presence of the external aldimine with plp and glutamate

PDB DOI: 10.2210/pdb5k8b/pdb

Classification: TRANSFERASE
Organism(s): Shewanella Oneidensis (Strain Mr-1)

Deposited: 2016-05-28
Deposition Author(s): Holden, H.M. , Thoden, J.B. , Zachman-Brockmeyer, T.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å

5k8b
Literature

X-ray structure of kdna, 8-amino-3,8-dideoxy-alpha-d-manno-octulosonate transaminase, from shewanella oneidensis in the presence of the external aldimine with plp and glutamate

Holden, H.M. , Thoden, J.B. , Zachman-Brockmeyer, T.R.

Primary Citation of Related Structures: 5K8B


Proteins
Molecule Chains Sequence Length Organism Sequence
8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase A 403 Shewanella Oneidensis (Strain Mr-1) MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTAMMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAVITPRTKAINLVHMCGSMAKMDEIKAICKKHNLVLLEDACQAIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDNAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMNAALGLAQLRKLDTIIDIQRKNKKAIKDAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAANGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQLEHHHHHH
8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase B 403 Shewanella Oneidensis (Strain Mr-1) MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTAMMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAVITPRTKAINLVHMCGSMAKMDEIKAICKKHNLVLLEDACQAIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDNAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMNAALGLAQLRKLDTIIDIQRKNKKAIKDAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAANGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQLEHHHHHH
8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase C 403 Shewanella Oneidensis (Strain Mr-1) MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTAMMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAVITPRTKAINLVHMCGSMAKMDEIKAICKKHNLVLLEDACQAIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDNAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMNAALGLAQLRKLDTIIDIQRKNKKAIKDAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAANGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQLEHHHHHH
8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase D 403 Shewanella Oneidensis (Strain Mr-1) MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTAMMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAVITPRTKAINLVHMCGSMAKMDEIKAICKKHNLVLLEDACQAIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDNAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMNAALGLAQLRKLDTIIDIQRKNKKAIKDAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAANGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQLEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2016-05-28
Deposition Author(s): Holden, H.M. , Thoden, J.B. , Zachman-Brockmeyer, T.R.