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FASTA Sequence PDB Format mmCIF Format
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5FEC

Crystal structure of 3bnc60 fab germline precursor in complex with 426c.tm4deltav1-3 gp120

PDB DOI: 10.2210/pdb5fec/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2015-12-16
Deposition Author(s): Bjorkman, P.J. , Scharf, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å

5fec
Literature

Crystal structure of 3bnc60 fab germline precursor in complex with 426c.tm4deltav1-3 gp120

Bjorkman, P.J. , Scharf, L.

Primary Citation of Related Structures: 5FEC


Proteins
Molecule Chains Sequence Length Organism Sequence
germline 3BNC60 heavy chain H 230 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARERSDFWDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
germline 3BNC60 heavy chain A 230 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARERSDFWDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH
germline 3BNC60 light chain L 210 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYEFIGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
germline 3BNC60 light chain B 210 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYEFIGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
426c.TM4deltaV1-3 gp120 C 353 Homo Sapiens , Human Immunodeficiency Virus 1 VWKEAKTTLFCASDAKAYEKECHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVDQMQEDVISIWDQCLKPCVKLTGGSTLTQACPKVTFDPIPIHYCAPAGYAILKCNQKTFNGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSKNLRDNAKIIIVQLNKSVEIVCTRPNNGGSGSGGDIRQAYCQISGRQWSEAVNQVKKKLKEHFPHKQISFQSSSGGDLEITTHSFNCGGEFFYCNTSGLFNDTISNATIMLPCRIKQIINMWQEVGKAIYAPPIKGQITCKSDITGLLLLRDGGDTTDNTEIFRPSGGDMRDNWRSELYKYKVVEIKPLHHHHHH
426c.TM4deltaV1-3 gp120 D 353 Homo Sapiens , Human Immunodeficiency Virus 1 VWKEAKTTLFCASDAKAYEKECHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVDQMQEDVISIWDQCLKPCVKLTGGSTLTQACPKVTFDPIPIHYCAPAGYAILKCNQKTFNGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSKNLRDNAKIIIVQLNKSVEIVCTRPNNGGSGSGGDIRQAYCQISGRQWSEAVNQVKKKLKEHFPHKQISFQSSSGGDLEITTHSFNCGGEFFYCNTSGLFNDTISNATIMLPCRIKQIINMWQEVGKAIYAPPIKGQITCKSDITGLLLLRDGGDTTDNTEIFRPSGGDMRDNWRSELYKYKVVEIKPLHHHHHH
426c.TM4deltaV1-3 gp120 G 353 Homo Sapiens , Human Immunodeficiency Virus 1 VWKEAKTTLFCASDAKAYEKECHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVDQMQEDVISIWDQCLKPCVKLTGGSTLTQACPKVTFDPIPIHYCAPAGYAILKCNQKTFNGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSKNLRDNAKIIIVQLNKSVEIVCTRPNNGGSGSGGDIRQAYCQISGRQWSEAVNQVKKKLKEHFPHKQISFQSSSGGDLEITTHSFNCGGEFFYCNTSGLFNDTISNATIMLPCRIKQIINMWQEVGKAIYAPPIKGQITCKSDITGLLLLRDGGDTTDNTEIFRPSGGDMRDNWRSELYKYKVVEIKPLHHHHHH
426c.TM4deltaV1-3 gp120 I 353 Homo Sapiens , Human Immunodeficiency Virus 1 VWKEAKTTLFCASDAKAYEKECHNVWATHACVPTDPNPQEVVLENVTENFNMWKNDMVDQMQEDVISIWDQCLKPCVKLTGGSTLTQACPKVTFDPIPIHYCAPAGYAILKCNQKTFNGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSKNLRDNAKIIIVQLNKSVEIVCTRPNNGGSGSGGDIRQAYCQISGRQWSEAVNQVKKKLKEHFPHKQISFQSSSGGDLEITTHSFNCGGEFFYCNTSGLFNDTISNATIMLPCRIKQIINMWQEVGKAIYAPPIKGQITCKSDITGLLLLRDGGDTTDNTEIFRPSGGDMRDNWRSELYKYKVVEIKPLHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-12-16
Deposition Author(s): Bjorkman, P.J. , Scharf, L.