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FASTA Sequence PDB Format mmCIF Format
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5EJK

Crystal structure of the rous sarcoma virus intasome

PDB DOI: 10.2210/pdb5ejk/pdb

Classification: Transferase/DNA
Organism(s): Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct

Deposited: 2015-11-02
Deposition Author(s): Aihara, H. , Banerjee, S. , Shi, K. , Yin, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.8 Å

5ejk
Literature

Crystal structure of the rous sarcoma virus intasome

Aihara, H. , Banerjee, S. , Shi, K. , Yin, Z.

Primary Citation of Related Structures: 5EJK


Proteins
Molecule Chains Sequence Length Organism Sequence
Gag-Pro-Pol polyprotein A 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein B 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein C 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein D 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein E 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein F 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein G 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT
Gag-Pro-Pol polyprotein H 270 Rous Sarcoma Virus (Strain Prague C) , Rous Sarcoma Virus (Strain Schmidt-Ruppin E) , Synthetic Construct PLREAKDLHTALHIGPRALSKASNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVMGRPKAIKTDNGSCFTSKSTREWMARWGIAHTTGIPGNSQGQAMVERANRMMKDKIRVLAEGDGFMKRIPTSKQGEMMAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRIETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDIT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RSV Integrase i 42 NA GAGTATTGCATAAGACAACAGTGCACGAAAGAAGAAGACACT
RSV Integrase l 42 NA GAGTATTGCATAAGACAACAGTGCACGAAAGAAGAAGACACT
DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*TP*AP*CP*TP*C)-3') j 22 NA AATGTTGTCTTATGCAATACTC
DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*TP*AP*CP*TP*C)-3') m 22 NA AATGTTGTCTTATGCAATACTC
DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*T)-3') k 8 NA AGTGTCTT
DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*T)-3') n 8 NA AGTGTCTT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2015-11-02
Deposition Author(s): Aihara, H. , Banerjee, S. , Shi, K. , Yin, Z.