4PD4
Structural analysis of atovaquone-inhibited cytochrome bc1 complex reveals the molecular basis of antimalarial drug action
PDB DOI: 10.2210/pdb4pd4/pdb
Classification: OXIDOREDUCTASE/INHIBITOR Organism(s): Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium
Deposited: 2014-04-17 Deposition Author(s): Birth, D. , Hunte, C. , Kao, W.-C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.04 Å
Structural analysis of atovaquone-inhibited cytochrome bc1 complex reveals the molecular basis of antimalarial drug action
Birth, D. , Hunte, C. , Kao, W.-C.
Primary Citation of Related Structures: 4PD4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Cytochrome b-c1 complex subunit 1, mitochondrial | A | 431 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | AEVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW |
| Igh protein | J | 127 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | EVKLQESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATYYCARSEYYSVTGYAMDYWGQGTTVTVSSAWRHP |
| Ig kappa chain V-V region HP 124E1 | K | 107 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | DIELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHHIKFPWTFGAGTKLEIK |
| Cytochrome b-c1 complex subunit 2, mitochondrial | B | 352 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | LTVSARDAPTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGIPVNKASLAQYEVLANYLTSALSELSGLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDLSPAINYTKLKNAVQNESVSSPIELNFDAVKDFKLGKFNYVAVGDVSNLPYLDEL |
| Cytochrome b | C | 385 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENVLFYIGRVNK |
| Cytochrome c1, heme protein, mitochondrial | D | 248 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKPRK |
| Cytochrome b-c1 complex subunit Rieske, mitochondrial | E | 185 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | KSTYRTPNFDDVLKENNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG |
| Cytochrome b-c1 complex subunit 6 | F | 74 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK |
| Cytochrome b-c1 complex subunit 7 | G | 126 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | PQSFTSIARIGDYILKSPVLSKLCVPVANQFINLAGYKKLGLKFDDLIAEENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILEAEAAAKEKDELDNIEVSK |
| Cytochrome b-c1 complex subunit 8 | H | 93 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | GPPSGKTYMGWWGHMGGPKQKGITSYAVSPYAQKPLQGIFHNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSKAGREELERVNV |
| Cytochrome b-c1 complex subunit 9 | I | 57 | Enterobacter Aerogenes , Pseudomonas Chlororaphis Subsp. Piscium | SFSSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-04-17 Deposition Author(s): Birth, D. , Hunte, C. , Kao, W.-C.