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FASTA Sequence PDB Format mmCIF Format
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4DVR

Crystal structure of yu2 gp120 core in complex with fab 48d and nbd-557

PDB DOI: 10.2210/pdb4dvr/pdb

Classification: IMMUNE SYSTEM/TRANSCRIPTION INHIBITOR
Organism(s): Homo Sapiens , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Yu-2)

Deposited: 2012-02-23
Deposition Author(s): Kwon, Y.D. , Kwong, P.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Literature

Crystal structure of yu2 gp120 core in complex with fab 48d and nbd-557

Kwon, Y.D. , Kwong, P.D.

Primary Citation of Related Structures: 4DVR


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 G 313 Homo Sapiens , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Yu-2) EVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE
Fab 48d Light chain L 212 Homo Sapiens , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Yu-2) DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTKSFNRGE
Fab 48d Heavy chain H 219 Homo Sapiens , Human Immunodeficiency Virus Type 1 Group M Subtype B (Isolate Yu-2) EVQLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAADPWELNAFNVWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-02-23
Deposition Author(s): Kwon, Y.D. , Kwong, P.D.