data_9MDY
#
_entry.id 9MDY
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.403
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 9MDY pdb_00009mdy 10.2210/pdb9mdy/pdb
WWPDB D_1000290714 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
_pdbx_audit_revision_history.part_number
1 'Structure model' 1 0 2025-05-14 ?
2 'Structure model' 1 1 2025-05-28 ?
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_audit_revision_group.ordinal 1
_pdbx_audit_revision_group.revision_ordinal 2
_pdbx_audit_revision_group.data_content_type 'Structure model'
_pdbx_audit_revision_group.group 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.journal_volume'
7 2 'Structure model' '_citation.page_first'
8 2 'Structure model' '_citation.page_last'
9 2 'Structure model' '_citation.pdbx_database_id_DOI'
10 2 'Structure model' '_citation.pdbx_database_id_PubMed'
11 2 'Structure model' '_citation.title'
12 2 'Structure model' '_citation.year'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 9MDY
_pdbx_database_status.recvd_initial_deposition_date 2024-12-05
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email jwszostak@uchicago.edu
_pdbx_contact_author.name_first Jack
_pdbx_contact_author.name_last Szostak
_pdbx_contact_author.name_mi W.
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Fang, Z.' 1 0000-0001-8679-6633
'Jia, X.' 2 0000-0001-9094-9882
'Szostak, J.W.' 3 0000-0003-4131-1203
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_id_ASTM PNASA6
_citation.journal_id_CSD 0040
_citation.journal_id_ISSN 1091-6490
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 122
_citation.language ?
_citation.page_first e2505720122
_citation.page_last e2505720122
_citation.title 'Nonenzymatic RNA copying with a potentially primordial genetic alphabet.'
_citation.year 2025
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1073/pnas.2505720122
_citation.pdbx_database_id_PubMed 40397670
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Fang, Z.' 1 0000-0001-8679-6633
primary 'Jia, X.' 2 0000-0001-9094-9882
primary 'Xing, Y.' 3 0000-0002-4549-8370
primary 'Szostak, J.W.' 4 0000-0003-4131-1203
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'RNA strand with s(2)U:A pair sequence 2' 5099.129 1 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ?
3 water nat water 18.015 100 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'AGAGAAGA(SUR)CUUCUCU'
_entity_poly.pdbx_seq_one_letter_code_can AGAGAAGAUCUUCUCU
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 A n
1 2 G n
1 3 A n
1 4 G n
1 5 A n
1 6 A n
1 7 G n
1 8 A n
1 9 SUR n
1 10 C n
1 11 U n
1 12 U n
1 13 C n
1 14 U n
1 15 C n
1 16 U n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 16
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
SUR 'RNA linking' n "1-(BETA-D-RIBOFURANOSYL)-2-THIO-URACIL-5'-PHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 A 1 1 1 A A A . n
A 1 2 G 2 2 2 G G A . n
A 1 3 A 3 3 3 A A A . n
A 1 4 G 4 4 4 G G A . n
A 1 5 A 5 5 5 A A A . n
A 1 6 A 6 6 6 A A A . n
A 1 7 G 7 7 7 G G A . n
A 1 8 A 8 8 8 A A A . n
A 1 9 SUR 9 9 9 SUR SUR A . n
A 1 10 C 10 10 10 C C A . n
A 1 11 U 11 11 11 U U A . n
A 1 12 U 12 12 12 U U A . n
A 1 13 C 13 13 13 C C A . n
A 1 14 U 14 14 14 U U A . n
A 1 15 C 15 15 15 C C A . n
A 1 16 U 16 16 16 U U A . n
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id SUR
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id SUR
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG 1 101 1 MG MG A .
C 2 MG 1 102 2 MG MG A .
D 2 MG 1 103 3 MG MG A .
E 3 HOH 1 201 56 HOH HOH A .
E 3 HOH 2 202 104 HOH HOH A .
E 3 HOH 3 203 33 HOH HOH A .
E 3 HOH 4 204 95 HOH HOH A .
E 3 HOH 5 205 100 HOH HOH A .
E 3 HOH 6 206 34 HOH HOH A .
E 3 HOH 7 207 69 HOH HOH A .
E 3 HOH 8 208 67 HOH HOH A .
E 3 HOH 9 209 64 HOH HOH A .
E 3 HOH 10 210 75 HOH HOH A .
E 3 HOH 11 211 23 HOH HOH A .
E 3 HOH 12 212 10 HOH HOH A .
E 3 HOH 13 213 72 HOH HOH A .
E 3 HOH 14 214 68 HOH HOH A .
E 3 HOH 15 215 5 HOH HOH A .
E 3 HOH 16 216 73 HOH HOH A .
E 3 HOH 17 217 18 HOH HOH A .
E 3 HOH 18 218 77 HOH HOH A .
E 3 HOH 19 219 19 HOH HOH A .
E 3 HOH 20 220 62 HOH HOH A .
E 3 HOH 21 221 84 HOH HOH A .
E 3 HOH 22 222 26 HOH HOH A .
E 3 HOH 23 223 50 HOH HOH A .
E 3 HOH 24 224 4 HOH HOH A .
E 3 HOH 25 225 83 HOH HOH A .
E 3 HOH 26 226 79 HOH HOH A .
E 3 HOH 27 227 41 HOH HOH A .
E 3 HOH 28 228 89 HOH HOH A .
E 3 HOH 29 229 37 HOH HOH A .
E 3 HOH 30 230 98 HOH HOH A .
E 3 HOH 31 231 99 HOH HOH A .
E 3 HOH 32 232 3 HOH HOH A .
E 3 HOH 33 233 70 HOH HOH A .
E 3 HOH 34 234 39 HOH HOH A .
E 3 HOH 35 235 46 HOH HOH A .
E 3 HOH 36 236 24 HOH HOH A .
E 3 HOH 37 237 85 HOH HOH A .
E 3 HOH 38 238 36 HOH HOH A .
E 3 HOH 39 239 94 HOH HOH A .
E 3 HOH 40 240 74 HOH HOH A .
E 3 HOH 41 241 106 HOH HOH A .
E 3 HOH 42 242 45 HOH HOH A .
E 3 HOH 43 243 96 HOH HOH A .
E 3 HOH 44 244 21 HOH HOH A .
E 3 HOH 45 245 58 HOH HOH A .
E 3 HOH 46 246 7 HOH HOH A .
E 3 HOH 47 247 1 HOH HOH A .
E 3 HOH 48 248 16 HOH HOH A .
E 3 HOH 49 249 35 HOH HOH A .
E 3 HOH 50 250 27 HOH HOH A .
E 3 HOH 51 251 12 HOH HOH A .
E 3 HOH 52 252 31 HOH HOH A .
E 3 HOH 53 253 14 HOH HOH A .
E 3 HOH 54 254 55 HOH HOH A .
E 3 HOH 55 255 8 HOH HOH A .
E 3 HOH 56 256 29 HOH HOH A .
E 3 HOH 57 257 42 HOH HOH A .
E 3 HOH 58 258 32 HOH HOH A .
E 3 HOH 59 259 38 HOH HOH A .
E 3 HOH 60 260 20 HOH HOH A .
E 3 HOH 61 261 102 HOH HOH A .
E 3 HOH 62 262 61 HOH HOH A .
E 3 HOH 63 263 48 HOH HOH A .
E 3 HOH 64 264 40 HOH HOH A .
E 3 HOH 65 265 6 HOH HOH A .
E 3 HOH 66 266 13 HOH HOH A .
E 3 HOH 67 267 103 HOH HOH A .
E 3 HOH 68 268 60 HOH HOH A .
E 3 HOH 69 269 63 HOH HOH A .
E 3 HOH 70 270 86 HOH HOH A .
E 3 HOH 71 271 2 HOH HOH A .
E 3 HOH 72 272 9 HOH HOH A .
E 3 HOH 73 273 51 HOH HOH A .
E 3 HOH 74 274 49 HOH HOH A .
E 3 HOH 75 275 78 HOH HOH A .
E 3 HOH 76 276 97 HOH HOH A .
E 3 HOH 77 277 15 HOH HOH A .
E 3 HOH 78 278 65 HOH HOH A .
E 3 HOH 79 279 54 HOH HOH A .
E 3 HOH 80 280 22 HOH HOH A .
E 3 HOH 81 281 11 HOH HOH A .
E 3 HOH 82 282 105 HOH HOH A .
E 3 HOH 83 283 87 HOH HOH A .
E 3 HOH 84 284 90 HOH HOH A .
E 3 HOH 85 285 44 HOH HOH A .
E 3 HOH 86 286 53 HOH HOH A .
E 3 HOH 87 287 47 HOH HOH A .
E 3 HOH 88 288 28 HOH HOH A .
E 3 HOH 89 289 59 HOH HOH A .
E 3 HOH 90 290 66 HOH HOH A .
E 3 HOH 91 291 57 HOH HOH A .
E 3 HOH 92 292 101 HOH HOH A .
E 3 HOH 93 293 76 HOH HOH A .
E 3 HOH 94 294 80 HOH HOH A .
E 3 HOH 95 295 52 HOH HOH A .
E 3 HOH 96 296 93 HOH HOH A .
E 3 HOH 97 297 71 HOH HOH A .
E 3 HOH 98 298 88 HOH HOH A .
E 3 HOH 99 299 82 HOH HOH A .
E 3 HOH 100 300 81 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0425 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 9MDY
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 40.995
_cell.length_a_esd ?
_cell.length_b 40.995
_cell.length_b_esd ?
_cell.length_c 122.920
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 18
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 9MDY
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 155
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'H 3 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 9MDY
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.95
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 36.90
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
'0.2 M Magnesium chloride hexahydrate, 0.1 M HEPES sodium pH 7.5, 30% v/v Polyethylene glycol 400'
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp 298
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 99
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS3 2M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2024-10-30
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.id ?
_diffrn_detector.number_of_axes ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.97741
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'ALS BEAMLINE 5.0.1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.97741
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 5.0.1
_diffrn_source.pdbx_synchrotron_site ALS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 9MDY
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.36
_reflns.d_resolution_low 50
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 8888
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 100
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 9.2
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 49.4
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.966
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.047
_reflns.pdbx_Rpim_I_all 0.016
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.999
_reflns.pdbx_CC_star 1.000
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs 0.044
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
_reflns_shell.d_res_high 1.36
_reflns_shell.d_res_low 1.38
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 3.4
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 405
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 6.7
_reflns_shell.pdbx_chi_squared 0.951
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all 0.533
_reflns_shell.pdbx_Rpim_I_all 0.201
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half 0.899
_reflns_shell.pdbx_CC_star 0.973
_reflns_shell.pdbx_R_split ?
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.493
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_percent_possible_ellipsoidal ?
_reflns_shell.pdbx_percent_possible_spherical ?
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns_shell.pdbx_percent_possible_spherical_anomalous ?
_reflns_shell.pdbx_redundancy_anomalous ?
_reflns_shell.pdbx_CC_half_anomalous ?
_reflns_shell.pdbx_absDiff_over_sigma_anomalous ?
_reflns_shell.pdbx_percent_possible_anomalous ?
#
_refine.aniso_B[1][1] -0.004
_refine.aniso_B[1][2] -0.002
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][2] -0.004
_refine.aniso_B[2][3] -0.000
_refine.aniso_B[3][3] 0.013
_refine.B_iso_max ?
_refine.B_iso_mean 12.214
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.972
_refine.correlation_coeff_Fo_to_Fc_free 0.963
_refine.details 'Hydrogens have been added in their riding positions'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 9MDY
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.360
_refine.ls_d_res_low 40.973
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 8856
_refine.ls_number_reflns_R_free 413
_refine.ls_number_reflns_R_work 8443
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.394
_refine.ls_percent_reflns_R_free 4.664
_refine.ls_R_factor_all 0.187
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free 0.2175
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1856
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'MASK BULK SOLVENT'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.066
_refine.pdbx_overall_ESU_R_Free 0.069
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 1.108
_refine.overall_SU_ML 0.046
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 1.360
_refine_hist.d_res_low 40.973
_refine_hist.number_atoms_solvent 100
_refine_hist.number_atoms_total 439
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 336
_refine_hist.pdbx_number_atoms_ligand 3
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.013 0.012 375 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.033 0.020 158 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 2.250 1.890 574 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 3.073 1.786 384 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 0.062 5.000 11 ? r_dihedral_angle_other_2_deg ? ?
'X-RAY DIFFRACTION' ? 0.091 0.200 77 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 2.144 0.200 2 ? r_chiral_restr_other ? ?
'X-RAY DIFFRACTION' ? 0.029 0.020 185 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 59 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 0.087 0.200 38 ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.199 0.200 159 ? r_symmetry_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.250 0.200 140 ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? 0.075 0.200 109 ? r_symmetry_nbtor_other ? ?
'X-RAY DIFFRACTION' ? 0.223 0.200 63 ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.079 0.200 3 ? r_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? 0.101 0.200 8 ? r_symmetry_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.167 0.200 61 ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.196 0.200 27 ? r_symmetry_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 1.423 1.343 375 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 1.421 1.342 376 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? 1.978 2.444 574 ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 1.976 2.442 575 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 6.866 24.608 554 ? r_lrange_it ? ?
'X-RAY DIFFRACTION' ? 6.333 20.302 516 ? r_lrange_other ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 1.360 1.395 642 . 34 554 91.5888 . 0.257 . . 0.257 . . . . . 0.221 . 20 . 0.955 0.958 0.266
'X-RAY DIFFRACTION' 1.395 1.433 627 . 28 599 100.0000 . 0.256 . . 0.258 . . . . . 0.219 . 20 . 0.956 0.970 0.212
'X-RAY DIFFRACTION' 1.433 1.475 614 . 29 585 100.0000 . 0.241 . . 0.238 . . . . . 0.206 . 20 . 0.963 0.932 0.284
'X-RAY DIFFRACTION' 1.475 1.520 595 . 33 562 100.0000 . 0.238 . . 0.240 . . . . . 0.209 . 20 . 0.963 0.969 0.212
'X-RAY DIFFRACTION' 1.520 1.570 573 . 25 548 100.0000 . 0.223 . . 0.221 . . . . . 0.190 . 20 . 0.969 0.956 0.277
'X-RAY DIFFRACTION' 1.570 1.625 570 . 31 539 100.0000 . 0.214 . . 0.213 . . . . . 0.192 . 20 . 0.972 0.965 0.236
'X-RAY DIFFRACTION' 1.625 1.686 540 . 20 520 100.0000 . 0.205 . . 0.202 . . . . . 0.178 . 20 . 0.974 0.960 0.274
'X-RAY DIFFRACTION' 1.686 1.755 512 . 20 492 100.0000 . 0.193 . . 0.193 . . . . . 0.177 . 20 . 0.978 0.979 0.193
'X-RAY DIFFRACTION' 1.755 1.833 493 . 25 468 100.0000 . 0.198 . . 0.197 . . . . . 0.182 . 20 . 0.974 0.968 0.232
'X-RAY DIFFRACTION' 1.833 1.922 487 . 28 459 100.0000 . 0.212 . . 0.211 . . . . . 0.195 . 20 . 0.971 0.967 0.223
'X-RAY DIFFRACTION' 1.922 2.026 467 . 18 449 100.0000 . 0.206 . . 0.204 . . . . . 0.196 . 20 . 0.972 0.972 0.245
'X-RAY DIFFRACTION' 2.026 2.148 446 . 23 423 100.0000 . 0.181 . . 0.180 . . . . . 0.176 . 20 . 0.979 0.981 0.191
'X-RAY DIFFRACTION' 2.148 2.296 396 . 22 374 100.0000 . 0.204 . . 0.199 . . . . . 0.202 . 20 . 0.976 0.953 0.300
'X-RAY DIFFRACTION' 2.296 2.480 381 . 18 363 100.0000 . 0.188 . . 0.186 . . . . . 0.198 . 20 . 0.978 0.973 0.209
'X-RAY DIFFRACTION' 2.480 2.715 372 . 17 355 100.0000 . 0.198 . . 0.199 . . . . . 0.222 . 20 . 0.975 0.981 0.172
'X-RAY DIFFRACTION' 2.715 3.034 317 . 11 306 100.0000 . 0.179 . . 0.181 . . . . . 0.208 . 20 . 0.979 0.992 0.151
'X-RAY DIFFRACTION' 3.034 3.500 291 . 10 281 100.0000 . 0.134 . . 0.131 . . . . . 0.173 . 20 . 0.990 0.983 0.205
'X-RAY DIFFRACTION' 3.500 4.279 257 . 7 250 100.0000 . 0.133 . . 0.132 . . . . . 0.169 . 20 . 0.990 0.996 0.141
'X-RAY DIFFRACTION' 4.279 6.019 201 . 11 190 100.0000 . 0.146 . . 0.142 . . . . . 0.207 . 20 . 0.988 0.978 0.244
'X-RAY DIFFRACTION' 6.019 40.973 129 . 3 126 100.0000 . 0.201 . . 0.199 . . . . . 0.293 . 20 . 0.974 0.562 0.302
#
_struct.entry_id 9MDY
_struct.title '16mer self-complementary duplex RNA with s(2)U:A pair sequence 2'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 9MDY
_struct_keywords.text '2-Thiouridine, Nucleobase modification, Non-canonical Base Pair, RNA, Orgin of Life'
_struct_keywords.pdbx_keywords RNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 2 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 9MDY
_struct_ref.pdbx_db_accession 9MDY
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 9MDY
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 16
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 9MDY
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 16
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 16
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E
1 2 A,B,C,D,E
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A A 8 "O3'" ? ? ? 1_555 A SUR 9 P ? ? A A 8 A SUR 9 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale2 covale both ? A SUR 9 "O3'" ? ? ? 1_555 A C 10 P ? ? A SUR 9 A C 10 1_555 ? ? ? ? ? ? ? 1.591 ? ?
metalc1 metalc ? ? A C 13 "O2'" ? ? ? 1_555 D MG . MG ? ? A C 13 A MG 103 1_555 ? ? ? ? ? ? ? 2.590 ? ?
metalc2 metalc ? ? A C 13 "O2'" ? ? ? 1_555 D MG . MG ? ? A C 13 A MG 103 2_665 ? ? ? ? ? ? ? 2.590 ? ?
metalc3 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.179 ? ?
metalc4 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 219 1_555 ? ? ? ? ? ? ? 2.184 ? ?
metalc5 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 248 1_555 ? ? ? ? ? ? ? 1.936 ? ?
metalc6 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 295 1_555 ? ? ? ? ? ? ? 2.101 ? ?
metalc7 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 299 1_555 ? ? ? ? ? ? ? 1.963 ? ?
metalc8 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 A HOH 300 1_555 ? ? ? ? ? ? ? 2.225 ? ?
metalc9 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 211 1_555 ? ? ? ? ? ? ? 1.867 ? ?
metalc10 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 236 1_555 ? ? ? ? ? ? ? 2.091 ? ?
metalc11 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 280 1_555 ? ? ? ? ? ? ? 2.029 ? ?
metalc12 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 102 A HOH 286 1_555 ? ? ? ? ? ? ? 2.263 ? ?
metalc13 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 103 A HOH 257 1_555 ? ? ? ? ? ? ? 2.984 ? ?
metalc14 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 103 A HOH 257 2_665 ? ? ? ? ? ? ? 2.984 ? ?
hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 16 N3 ? ? A A 1 A U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 16 O4 ? ? A A 1 A U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 14 N3 ? ? A A 3 A U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 14 O4 ? ? A A 3 A U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 12 N3 ? ? A A 5 A U 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 12 O4 ? ? A A 5 A U 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 11 N3 ? ? A A 6 A U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 11 O4 ? ? A A 6 A U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 10 N3 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 10 O2 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 10 N4 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 A SUR 9 N3 ? ? A A 8 A SUR 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 A SUR 9 O4 ? ? A A 8 A SUR 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A SUR 9 N3 ? ? ? 1_555 A A 8 N1 ? ? A SUR 9 A A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A SUR 9 O4 ? ? ? 1_555 A A 8 N6 ? ? A SUR 9 A A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 7 N1 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 7 O6 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 7 N2 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 6 N1 ? ? A U 11 A A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 6 N6 ? ? A U 11 A A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 5 N1 ? ? A U 12 A A 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 5 N6 ? ? A U 12 A A 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 14 A A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 14 A A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog37 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 1 N1 ? ? A U 16 A A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog38 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 1 N6 ? ? A U 16 A A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 "O2'" ? A C 13 ? A C 13 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 "O2'" ? A C 13 ? A C 13 ? 1_555 0.0 ?
2 "O2'" ? A C 13 ? A C 13 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 130.4 ?
3 "O2'" ? A C 13 ? A C 13 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 257 ? 1_555 130.4 ?
4 "O2'" ? A C 13 ? A C 13 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 257 ? 2_665 130.4 ?
5 "O2'" ? A C 13 ? A C 13 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 257 ? 2_665 130.4 ?
6 O ? E HOH . ? A HOH 257 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? E HOH . ? A HOH 257 ? 2_665 0.0 ?
7 O ? E HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 219 ? 1_555 105.5 ?
8 O ? E HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 248 ? 1_555 90.6 ?
9 O ? E HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 248 ? 1_555 91.3 ?
10 O ? E HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 295 ? 1_555 82.7 ?
11 O ? E HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 295 ? 1_555 168.7 ?
12 O ? E HOH . ? A HOH 248 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 295 ? 1_555 96.4 ?
13 O ? E HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 171.2 ?
14 O ? E HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 83.2 ?
15 O ? E HOH . ? A HOH 248 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 90.7 ?
16 O ? E HOH . ? A HOH 295 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 88.5 ?
17 O ? E HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 91.1 ?
18 O ? E HOH . ? A HOH 219 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 82.4 ?
19 O ? E HOH . ? A HOH 248 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 173.6 ?
20 O ? E HOH . ? A HOH 295 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 89.9 ?
21 O ? E HOH . ? A HOH 299 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 88.4 ?
22 O ? E HOH . ? A HOH 211 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 236 ? 1_555 95.6 ?
23 O ? E HOH . ? A HOH 211 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 280 ? 1_555 85.1 ?
24 O ? E HOH . ? A HOH 236 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 280 ? 1_555 96.2 ?
25 O ? E HOH . ? A HOH 211 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 286 ? 1_555 77.8 ?
26 O ? E HOH . ? A HOH 236 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 286 ? 1_555 168.9 ?
27 O ? E HOH . ? A HOH 280 ? 1_555 MG ? C MG . ? A MG 102 ? 1_555 O ? E HOH . ? A HOH 286 ? 1_555 74.6 ?
#
_pdbx_entry_details.entry_id 9MDY
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.has_protein_modification N
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 O
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 HOH
_pdbx_validate_close_contact.auth_seq_id_1 218
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 280
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 1.85
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A A 3 ? ? P A A 3 ? ? OP2 A A 3 ? ? 100.28 105.70 -5.42 0.90 N
2 1 "O5'" A G 7 ? ? P A G 7 ? ? OP2 A G 7 ? ? 86.82 105.70 -18.88 0.90 N
3 1 "O3'" A SUR 9 ? ? P A C 10 ? ? OP2 A C 10 ? ? 118.34 110.50 7.84 1.10 Y
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id C
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 15
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.058
_pdbx_validate_planes.type 'SIDE CHAIN'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A MG 103 ? D MG .
2 1 A HOH 235 ? E HOH .
3 1 A HOH 242 ? E HOH .
4 1 A HOH 257 ? E HOH .
5 1 A HOH 284 ? E HOH .
6 1 A HOH 285 ? E HOH .
7 1 A HOH 287 ? E HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
G OP3 O N N 73
G P P N N 74
G OP1 O N N 75
G OP2 O N N 76
G "O5'" O N N 77
G "C5'" C N N 78
G "C4'" C N R 79
G "O4'" O N N 80
G "C3'" C N S 81
G "O3'" O N N 82
G "C2'" C N R 83
G "O2'" O N N 84
G "C1'" C N R 85
G N9 N Y N 86
G C8 C Y N 87
G N7 N Y N 88
G C5 C Y N 89
G C6 C N N 90
G O6 O N N 91
G N1 N N N 92
G C2 C N N 93
G N2 N N N 94
G N3 N N N 95
G C4 C Y N 96
G HOP3 H N N 97
G HOP2 H N N 98
G "H5'" H N N 99
G "H5''" H N N 100
G "H4'" H N N 101
G "H3'" H N N 102
G "HO3'" H N N 103
G "H2'" H N N 104
G "HO2'" H N N 105
G "H1'" H N N 106
G H8 H N N 107
G H1 H N N 108
G H21 H N N 109
G H22 H N N 110
HOH O O N N 111
HOH H1 H N N 112
HOH H2 H N N 113
MG MG MG N N 114
SUR P P N N 115
SUR OP1 O N N 116
SUR OP2 O N N 117
SUR OP3 O N N 118
SUR "O5'" O N N 119
SUR "C5'" C N N 120
SUR "C4'" C N R 121
SUR "O4'" O N N 122
SUR "C3'" C N S 123
SUR "C1'" C N R 124
SUR N1 N N N 125
SUR "C2'" C N R 126
SUR C6 C N N 127
SUR C2 C N N 128
SUR C5 C N N 129
SUR S2 S N N 130
SUR N3 N N N 131
SUR C4 C N N 132
SUR O4 O N N 133
SUR "O2'" O N N 134
SUR "O3'" O N N 135
SUR HOP1 H N N 136
SUR HOP3 H N N 137
SUR "H5'1" H N N 138
SUR "H5'2" H N N 139
SUR "H4'" H N N 140
SUR "H3'" H N N 141
SUR "H1'" H N N 142
SUR "H2'" H N N 143
SUR HC6 H N N 144
SUR HC5 H N N 145
SUR HN3 H N N 146
SUR HO2 H N N 147
SUR HO3 H N N 148
U OP3 O N N 149
U P P N N 150
U OP1 O N N 151
U OP2 O N N 152
U "O5'" O N N 153
U "C5'" C N N 154
U "C4'" C N R 155
U "O4'" O N N 156
U "C3'" C N S 157
U "O3'" O N N 158
U "C2'" C N R 159
U "O2'" O N N 160
U "C1'" C N R 161
U N1 N N N 162
U C2 C N N 163
U O2 O N N 164
U N3 N N N 165
U C4 C N N 166
U O4 O N N 167
U C5 C N N 168
U C6 C N N 169
U HOP3 H N N 170
U HOP2 H N N 171
U "H5'" H N N 172
U "H5''" H N N 173
U "H4'" H N N 174
U "H3'" H N N 175
U "HO3'" H N N 176
U "H2'" H N N 177
U "HO2'" H N N 178
U "H1'" H N N 179
U H3 H N N 180
U H5 H N N 181
U H6 H N N 182
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
C OP3 P sing N N 40
C OP3 HOP3 sing N N 41
C P OP1 doub N N 42
C P OP2 sing N N 43
C P "O5'" sing N N 44
C OP2 HOP2 sing N N 45
C "O5'" "C5'" sing N N 46
C "C5'" "C4'" sing N N 47
C "C5'" "H5'" sing N N 48
C "C5'" "H5''" sing N N 49
C "C4'" "O4'" sing N N 50
C "C4'" "C3'" sing N N 51
C "C4'" "H4'" sing N N 52
C "O4'" "C1'" sing N N 53
C "C3'" "O3'" sing N N 54
C "C3'" "C2'" sing N N 55
C "C3'" "H3'" sing N N 56
C "O3'" "HO3'" sing N N 57
C "C2'" "O2'" sing N N 58
C "C2'" "C1'" sing N N 59
C "C2'" "H2'" sing N N 60
C "O2'" "HO2'" sing N N 61
C "C1'" N1 sing N N 62
C "C1'" "H1'" sing N N 63
C N1 C2 sing N N 64
C N1 C6 sing N N 65
C C2 O2 doub N N 66
C C2 N3 sing N N 67
C N3 C4 doub N N 68
C C4 N4 sing N N 69
C C4 C5 sing N N 70
C N4 H41 sing N N 71
C N4 H42 sing N N 72
C C5 C6 doub N N 73
C C5 H5 sing N N 74
C C6 H6 sing N N 75
G OP3 P sing N N 76
G OP3 HOP3 sing N N 77
G P OP1 doub N N 78
G P OP2 sing N N 79
G P "O5'" sing N N 80
G OP2 HOP2 sing N N 81
G "O5'" "C5'" sing N N 82
G "C5'" "C4'" sing N N 83
G "C5'" "H5'" sing N N 84
G "C5'" "H5''" sing N N 85
G "C4'" "O4'" sing N N 86
G "C4'" "C3'" sing N N 87
G "C4'" "H4'" sing N N 88
G "O4'" "C1'" sing N N 89
G "C3'" "O3'" sing N N 90
G "C3'" "C2'" sing N N 91
G "C3'" "H3'" sing N N 92
G "O3'" "HO3'" sing N N 93
G "C2'" "O2'" sing N N 94
G "C2'" "C1'" sing N N 95
G "C2'" "H2'" sing N N 96
G "O2'" "HO2'" sing N N 97
G "C1'" N9 sing N N 98
G "C1'" "H1'" sing N N 99
G N9 C8 sing Y N 100
G N9 C4 sing Y N 101
G C8 N7 doub Y N 102
G C8 H8 sing N N 103
G N7 C5 sing Y N 104
G C5 C6 sing N N 105
G C5 C4 doub Y N 106
G C6 O6 doub N N 107
G C6 N1 sing N N 108
G N1 C2 sing N N 109
G N1 H1 sing N N 110
G C2 N2 sing N N 111
G C2 N3 doub N N 112
G N2 H21 sing N N 113
G N2 H22 sing N N 114
G N3 C4 sing N N 115
HOH O H1 sing N N 116
HOH O H2 sing N N 117
SUR P OP1 sing N N 118
SUR P OP2 doub N N 119
SUR P OP3 sing N N 120
SUR P "O5'" sing N N 121
SUR OP1 HOP1 sing N N 122
SUR OP3 HOP3 sing N N 123
SUR "O5'" "C5'" sing N N 124
SUR "C5'" "C4'" sing N N 125
SUR "C5'" "H5'1" sing N N 126
SUR "C5'" "H5'2" sing N N 127
SUR "C4'" "O4'" sing N N 128
SUR "C4'" "C3'" sing N N 129
SUR "C4'" "H4'" sing N N 130
SUR "O4'" "C1'" sing N N 131
SUR "C3'" "C2'" sing N N 132
SUR "C3'" "O3'" sing N N 133
SUR "C3'" "H3'" sing N N 134
SUR "C1'" N1 sing N N 135
SUR "C1'" "C2'" sing N N 136
SUR "C1'" "H1'" sing N N 137
SUR N1 C6 sing N N 138
SUR N1 C2 sing N N 139
SUR "C2'" "O2'" sing N N 140
SUR "C2'" "H2'" sing N N 141
SUR C6 C5 doub N N 142
SUR C6 HC6 sing N N 143
SUR C2 S2 doub N N 144
SUR C2 N3 sing N N 145
SUR C5 C4 sing N N 146
SUR C5 HC5 sing N N 147
SUR N3 C4 sing N N 148
SUR N3 HN3 sing N N 149
SUR C4 O4 doub N N 150
SUR "O2'" HO2 sing N N 151
SUR "O3'" HO3 sing N N 152
U OP3 P sing N N 153
U OP3 HOP3 sing N N 154
U P OP1 doub N N 155
U P OP2 sing N N 156
U P "O5'" sing N N 157
U OP2 HOP2 sing N N 158
U "O5'" "C5'" sing N N 159
U "C5'" "C4'" sing N N 160
U "C5'" "H5'" sing N N 161
U "C5'" "H5''" sing N N 162
U "C4'" "O4'" sing N N 163
U "C4'" "C3'" sing N N 164
U "C4'" "H4'" sing N N 165
U "O4'" "C1'" sing N N 166
U "C3'" "O3'" sing N N 167
U "C3'" "C2'" sing N N 168
U "C3'" "H3'" sing N N 169
U "O3'" "HO3'" sing N N 170
U "C2'" "O2'" sing N N 171
U "C2'" "C1'" sing N N 172
U "C2'" "H2'" sing N N 173
U "O2'" "HO2'" sing N N 174
U "C1'" N1 sing N N 175
U "C1'" "H1'" sing N N 176
U N1 C2 sing N N 177
U N1 C6 sing N N 178
U C2 O2 doub N N 179
U C2 N3 sing N N 180
U N3 C4 sing N N 181
U N3 H3 sing N N 182
U C4 O4 doub N N 183
U C4 C5 sing N N 184
U C5 C6 doub N N 185
U C5 H5 sing N N 186
U C6 H6 sing N N 187
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
9MDY 'a-form double helix'
9MDY 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A A 1 1_555 A U 16 4_555 -0.034 -0.102 0.095 1.375 -10.041 1.514 1 A_A1:U16_A A 1 ? A 16 ? 20 1
1 A G 2 1_555 A C 15 4_555 -0.306 -0.213 -0.121 -3.151 -15.693 -0.068 2 A_G2:C15_A A 2 ? A 15 ? 19 1
1 A A 3 1_555 A U 14 4_555 0.025 -0.107 0.038 -3.066 -12.897 2.810 3 A_A3:U14_A A 3 ? A 14 ? 20 1
1 A G 4 1_555 A C 13 4_555 -0.379 -0.197 -0.159 -1.298 -9.832 -1.642 4 A_G4:C13_A A 4 ? A 13 ? 19 1
1 A A 5 1_555 A U 12 4_555 0.027 -0.220 -0.109 -5.699 -8.441 2.820 5 A_A5:U12_A A 5 ? A 12 ? 20 1
1 A A 6 1_555 A U 11 4_555 0.083 -0.070 -0.151 -7.144 -13.280 2.515 6 A_A6:U11_A A 6 ? A 11 ? 20 1
1 A G 7 1_555 A C 10 4_555 -0.172 -0.146 0.025 -4.617 -10.714 -0.388 7 A_G7:C10_A A 7 ? A 10 ? 19 1
1 A A 8 1_555 A SUR 9 4_555 0.091 -0.098 -0.083 -1.612 -9.803 -4.323 8 A_A8:SUR9_A A 8 ? A 9 ? 20 1
1 A SUR 9 1_555 A A 8 4_555 -0.091 -0.098 -0.083 1.612 -9.803 -4.323 9 A_SUR9:A8_A A 9 ? A 8 ? 20 1
1 A C 10 1_555 A G 7 4_555 0.172 -0.146 0.025 4.617 -10.714 -0.388 10 A_C10:G7_A A 10 ? A 7 ? 19 1
1 A U 11 1_555 A A 6 4_555 -0.083 -0.070 -0.151 7.144 -13.280 2.515 11 A_U11:A6_A A 11 ? A 6 ? 20 1
1 A U 12 1_555 A A 5 4_555 -0.027 -0.220 -0.109 5.699 -8.441 2.820 12 A_U12:A5_A A 12 ? A 5 ? 20 1
1 A C 13 1_555 A G 4 4_555 0.379 -0.197 -0.159 1.298 -9.832 -1.642 13 A_C13:G4_A A 13 ? A 4 ? 19 1
1 A U 14 1_555 A A 3 4_555 -0.025 -0.107 0.038 3.066 -12.897 2.810 14 A_U14:A3_A A 14 ? A 3 ? 20 1
1 A C 15 1_555 A G 2 4_555 0.306 -0.213 -0.121 3.151 -15.693 -0.068 15 A_C15:G2_A A 15 ? A 2 ? 19 1
1 A U 16 1_555 A A 1 4_555 0.034 -0.102 0.095 -1.375 -10.041 1.514 16 A_U16:A1_A A 16 ? A 1 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A A 1 1_555 A U 16 4_555 A G 2 1_555 A C 15 4_555 -0.637 -1.094 3.264 -1.061 7.147 33.567 -2.937 0.918 2.993 12.200
1.811 34.314 1 AA_A1G2:C15U16_AA A 1 ? A 16 ? A 2 ? A 15 ?
1 A G 2 1_555 A C 15 4_555 A A 3 1_555 A U 14 4_555 0.624 -1.135 3.184 -0.372 4.654 34.397 -2.580 -1.100 3.002 7.825
0.626 34.703 2 AA_G2A3:U14C15_AA A 2 ? A 15 ? A 3 ? A 14 ?
1 A A 3 1_555 A U 14 4_555 A G 4 1_555 A C 13 4_555 -0.353 -1.522 3.168 -0.712 11.431 30.487 -4.496 0.519 2.460 20.837
1.297 32.519 3 AA_A3G4:C13U14_AA A 3 ? A 14 ? A 4 ? A 13 ?
1 A G 4 1_555 A C 13 4_555 A A 5 1_555 A U 12 4_555 0.517 -1.678 3.388 -0.575 12.449 30.670 -4.930 -1.000 2.525 22.409
1.034 33.048 4 AA_G4A5:U12C13_AA A 4 ? A 13 ? A 5 ? A 12 ?
1 A A 5 1_555 A U 12 4_555 A A 6 1_555 A U 11 4_555 0.442 -1.641 3.294 3.205 12.848 31.456 -4.685 -0.284 2.485 22.492
-5.610 34.065 5 AA_A5A6:U11U12_AA A 5 ? A 12 ? A 6 ? A 11 ?
1 A A 6 1_555 A U 11 4_555 A G 7 1_555 A C 10 4_555 0.115 -2.167 3.089 0.765 10.662 26.483 -6.395 -0.089 2.080 22.160
-1.589 28.523 6 AA_A6G7:C10U11_AA A 6 ? A 11 ? A 7 ? A 10 ?
1 A G 7 1_555 A C 10 4_555 A A 8 1_555 A SUR 9 4_555 -0.887 -1.525 3.149 -0.771 5.708 33.657 -3.437 1.397 2.878 9.768
1.320 34.132 7 AA_G7A8:SUR9C10_AA A 7 ? A 10 ? A 8 ? A 9 ?
1 A A 8 1_555 A SUR 9 4_555 A SUR 9 1_555 A A 8 4_555 0.000 -1.092 3.188 0.000 9.197 29.779 -3.662 0.000 2.737 17.381
0.000 31.136 8 AA_A8SUR9:A8SUR9_AA A 8 ? A 9 ? A 9 ? A 8 ?
1 A SUR 9 1_555 A A 8 4_555 A C 10 1_555 A G 7 4_555 0.887 -1.525 3.149 0.771 5.708 33.657 -3.437 -1.397 2.878 9.768
-1.320 34.132 9 AA_SUR9C10:G7A8_AA A 9 ? A 8 ? A 10 ? A 7 ?
1 A C 10 1_555 A G 7 4_555 A U 11 1_555 A A 6 4_555 -0.115 -2.167 3.089 -0.765 10.662 26.483 -6.395 0.089 2.080 22.160
1.589 28.523 10 AA_C10U11:A6G7_AA A 10 ? A 7 ? A 11 ? A 6 ?
1 A U 11 1_555 A A 6 4_555 A U 12 1_555 A A 5 4_555 -0.442 -1.641 3.294 -3.205 12.848 31.456 -4.685 0.284 2.485 22.492
5.610 34.065 11 AA_U11U12:A5A6_AA A 11 ? A 6 ? A 12 ? A 5 ?
1 A U 12 1_555 A A 5 4_555 A C 13 1_555 A G 4 4_555 -0.517 -1.678 3.388 0.575 12.449 30.670 -4.930 1.000 2.525 22.409
-1.034 33.048 12 AA_U12C13:G4A5_AA A 12 ? A 5 ? A 13 ? A 4 ?
1 A C 13 1_555 A G 4 4_555 A U 14 1_555 A A 3 4_555 0.353 -1.522 3.168 0.712 11.431 30.487 -4.496 -0.519 2.460 20.837
-1.297 32.519 13 AA_C13U14:A3G4_AA A 13 ? A 4 ? A 14 ? A 3 ?
1 A U 14 1_555 A A 3 4_555 A C 15 1_555 A G 2 4_555 -0.624 -1.135 3.184 0.372 4.654 34.397 -2.580 1.100 3.002 7.825
-0.626 34.703 14 AA_U14C15:G2A3_AA A 14 ? A 3 ? A 15 ? A 2 ?
1 A C 15 1_555 A G 2 4_555 A U 16 1_555 A A 1 4_555 0.637 -1.094 3.264 1.061 7.147 33.567 -2.937 -0.918 2.993 12.200
-1.811 34.314 15 AA_C15U16:A1G2_AA A 15 ? A 2 ? A 16 ? A 1 ?
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Science Foundation (NSF, United States)' 'United States' 2104708 1
'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3nd4
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 9MDY
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 0.024393
_atom_sites.fract_transf_matrix[1][2] 0.014083
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.028167
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008135
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
_atom_type.pdbx_scat_Z
_atom_type.pdbx_N_electrons
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_a3
_atom_type.scat_Cromer_Mann_b3
_atom_type.scat_Cromer_Mann_a4
_atom_type.scat_Cromer_Mann_b4
_atom_type.scat_Cromer_Mann_c
C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156
H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030
MG 12 12 5.4265 2.8275 2.1759 79.2611 1.2283 0.3808 2.3099 7.1937 0.8594
N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379
O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508
P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.1150
S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 0.8669
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.calc_flag
ATOM 1 O "O5'" . A A 1 1 ? 1.023 12.738 15.640 1.000 21.114 0 1 A A "O5'" 1 ?
ATOM 2 C "C5'" . A A 1 1 ? -0.233 13.393 15.479 1.000 17.157 0 1 A A "C5'" 1 ?
ATOM 3 C "C4'" . A A 1 1 ? -0.197 14.792 16.048 1.000 14.752 0 1 A A "C4'" 1 ?
ATOM 4 O "O4'" . A A 1 1 ? 0.323 14.805 17.403 1.000 12.678 0 1 A A "O4'" 1 ?
ATOM 5 C "C3'" . A A 1 1 ? 0.714 15.777 15.332 1.000 13.392 0 1 A A "C3'" 1 ?
ATOM 6 O "O3'" . A A 1 1 ? 0.018 16.366 14.263 1.000 13.293 0 1 A A "O3'" 1 ?
ATOM 7 C "C2'" . A A 1 1 ? 0.918 16.850 16.390 1.000 12.178 0 1 A A "C2'" 1 ?
ATOM 8 O "O2'" . A A 1 1 ? -0.191 17.685 16.618 1.000 12.582 0 1 A A "O2'" 1 ?
ATOM 9 C "C1'" . A A 1 1 ? 1.156 15.946 17.579 1.000 10.521 0 1 A A "C1'" 1 ?
ATOM 10 N N9 . A A 1 1 ? 2.514 15.470 17.802 1.000 10.156 0 1 A A N9 1 ?
ATOM 11 C C8 . A A 1 1 ? 2.991 14.180 17.687 1.000 10.274 0 1 A A C8 1 ?
ATOM 12 N N7 . A A 1 1 ? 4.222 14.018 18.099 1.000 11.580 0 1 A A N7 1 ?
ATOM 13 C C5 . A A 1 1 ? 4.574 15.301 18.536 1.000 9.160 0 1 A A C5 1 ?
ATOM 14 C C6 . A A 1 1 ? 5.735 15.800 19.124 1.000 9.564 0 1 A A C6 1 ?
ATOM 15 N N6 . A A 1 1 ? 6.786 15.085 19.415 1.000 10.268 0 1 A A N6 1 ?
ATOM 16 N N1 . A A 1 1 ? 5.768 17.095 19.439 1.000 8.886 0 1 A A N1 1 ?
ATOM 17 C C2 . A A 1 1 ? 4.725 17.865 19.173 1.000 8.466 0 1 A A C2 1 ?
ATOM 18 N N3 . A A 1 1 ? 3.559 17.505 18.670 1.000 8.866 0 1 A A N3 1 ?
ATOM 19 C C4 . A A 1 1 ? 3.547 16.197 18.355 1.000 9.012 0 1 A A C4 1 ?
ATOM 20 P P . G A 1 2 ? 0.796 16.852 12.937 1.000 12.999 0 2 G A P 1 ?
ATOM 21 O OP1 . G A 1 2 ? -0.222 17.165 11.897 1.000 15.580 0 2 G A OP1 1 ?
ATOM 22 O OP2 . G A 1 2 ? 1.802 15.819 12.687 1.000 14.692 0 2 G A OP2 1 ?
ATOM 23 O "O5'" . G A 1 2 ? 1.528 18.185 13.379 1.000 13.546 0 2 G A "O5'" 1 ?
ATOM 24 C "C5'" . G A 1 2 ? 0.751 19.330 13.620 1.000 14.028 0 2 G A "C5'" 1 ?
ATOM 25 C "C4'" . G A 1 2 ? 1.654 20.435 14.090 1.000 12.738 0 2 G A "C4'" 1 ?
ATOM 26 O "O4'" . G A 1 2 ? 2.166 20.045 15.386 1.000 11.742 0 2 G A "O4'" 1 ?
ATOM 27 C "C3'" . G A 1 2 ? 2.930 20.618 13.287 1.000 13.761 0 2 G A "C3'" 1 ?
ATOM 28 O "O3'" . G A 1 2 ? 2.667 21.447 12.193 1.000 14.279 0 2 G A "O3'" 1 ?
ATOM 29 C "C2'" . G A 1 2 ? 3.790 21.343 14.293 1.000 12.565 0 2 G A "C2'" 1 ?
ATOM 30 O "O2'" . G A 1 2 ? 3.401 22.660 14.546 1.000 14.079 0 2 G A "O2'" 1 ?
ATOM 31 C "C1'" . G A 1 2 ? 3.513 20.492 15.518 1.000 10.512 0 2 G A "C1'" 1 ?
ATOM 32 N N9 . G A 1 2 ? 4.386 19.352 15.631 1.000 9.532 0 2 G A N9 1 ?
ATOM 33 C C8 . G A 1 2 ? 4.126 18.050 15.277 1.000 9.507 0 2 G A C8 1 ?
ATOM 34 N N7 . G A 1 2 ? 5.088 17.214 15.549 1.000 9.306 0 2 G A N7 1 ?
ATOM 35 C C5 . G A 1 2 ? 6.057 18.018 16.142 1.000 8.220 0 2 G A C5 1 ?
ATOM 36 C C6 . G A 1 2 ? 7.324 17.686 16.626 1.000 8.100 0 2 G A C6 1 ?
ATOM 37 O O6 . G A 1 2 ? 7.825 16.585 16.702 1.000 8.941 0 2 G A O6 1 ?
ATOM 38 N N1 . G A 1 2 ? 8.040 18.805 17.063 1.000 7.705 0 2 G A N1 1 ?
ATOM 39 C C2 . G A 1 2 ? 7.575 20.094 17.036 1.000 7.733 0 2 G A C2 1 ?
ATOM 40 N N2 . G A 1 2 ? 8.406 21.063 17.467 1.000 8.784 0 2 G A N2 1 ?
ATOM 41 N N3 . G A 1 2 ? 6.356 20.413 16.627 1.000 8.498 0 2 G A N3 1 ?
ATOM 42 C C4 . G A 1 2 ? 5.649 19.330 16.198 1.000 8.296 0 2 G A C4 1 ?
ATOM 43 P P . A A 1 3 ? 3.519 21.252 10.855 1.000 15.520 0 3 A A P 1 ?
ATOM 44 O OP1 . A A 1 3 ? 2.936 22.137 9.802 1.000 16.496 0 3 A A OP1 1 ?
ATOM 45 O OP2 . A A 1 3 ? 3.782 19.863 10.522 1.000 15.696 0 3 A A OP2 1 ?
ATOM 46 O "O5'" . A A 1 3 ? 4.996 21.728 11.290 1.000 13.108 0 3 A A "O5'" 1 ?
ATOM 47 C "C5'" . A A 1 3 ? 5.195 23.106 11.627 1.000 12.579 0 3 A A "C5'" 1 ?
ATOM 48 C "C4'" . A A 1 3 ? 6.578 23.248 12.205 1.000 11.871 0 3 A A "C4'" 1 ?
ATOM 49 O "O4'" . A A 1 3 ? 6.699 22.441 13.395 1.000 11.090 0 3 A A "O4'" 1 ?
ATOM 50 C "C3'" . A A 1 3 ? 7.711 22.708 11.363 1.000 11.760 0 3 A A "C3'" 1 ?
ATOM 51 O "O3'" . A A 1 3 ? 7.997 23.645 10.349 1.000 12.140 0 3 A A "O3'" 1 ?
ATOM 52 C "C2'" . A A 1 3 ? 8.805 22.646 12.410 1.000 10.739 0 3 A A "C2'" 1 ?
ATOM 53 O "O2'" . A A 1 3 ? 9.272 23.925 12.752 1.000 11.543 0 3 A A "O2'" 1 ?
ATOM 54 C "C1'" . A A 1 3 ? 8.025 21.990 13.542 1.000 9.818 0 3 A A "C1'" 1 ?
ATOM 55 N N9 . A A 1 3 ? 8.025 20.551 13.502 1.000 9.470 0 3 A A N9 1 ?
ATOM 56 C C8 . A A 1 3 ? 7.065 19.718 13.000 1.000 9.778 0 3 A A C8 1 ?
ATOM 57 N N7 . A A 1 3 ? 7.358 18.460 13.098 1.000 9.267 0 3 A A N7 1 ?
ATOM 58 C C5 . A A 1 3 ? 8.625 18.450 13.684 1.000 8.603 0 3 A A C5 1 ?
ATOM 59 C C6 . A A 1 3 ? 9.506 17.404 14.053 1.000 8.652 0 3 A A C6 1 ?
ATOM 60 N N6 . A A 1 3 ? 9.223 16.109 13.947 1.000 9.335 0 3 A A N6 1 ?
ATOM 61 N N1 . A A 1 3 ? 10.678 17.765 14.627 1.000 8.634 0 3 A A N1 1 ?
ATOM 62 C C2 . A A 1 3 ? 10.983 19.043 14.790 1.000 9.008 0 3 A A C2 1 ?
ATOM 63 N N3 . A A 1 3 ? 10.211 20.102 14.528 1.000 8.092 0 3 A A N3 1 ?
ATOM 64 C C4 . A A 1 3 ? 9.058 19.737 13.932 1.000 8.764 0 3 A A C4 1 ?
ATOM 65 P P . G A 1 4 ? 8.622 23.135 8.986 1.000 13.713 0 4 G A P 1 ?
ATOM 66 O OP1 . G A 1 4 ? 8.567 24.266 8.003 1.000 18.499 0 4 G A OP1 1 ?
ATOM 67 O OP2 . G A 1 4 ? 7.994 21.863 8.584 1.000 16.135 0 4 G A OP2 1 ?
ATOM 68 O "O5'" . G A 1 4 ? 10.129 22.818 9.393 1.000 12.672 0 4 G A "O5'" 1 ?
ATOM 69 C "C5'" . G A 1 4 ? 11.029 23.876 9.768 1.000 12.286 0 4 G A "C5'" 1 ?
ATOM 70 C "C4'" . G A 1 4 ? 12.356 23.295 10.194 1.000 11.939 0 4 G A "C4'" 1 ?
ATOM 71 O "O4'" . G A 1 4 ? 12.176 22.523 11.400 1.000 11.652 0 4 G A "O4'" 1 ?
ATOM 72 C "C3'" . G A 1 4 ? 12.996 22.269 9.262 1.000 13.320 0 4 G A "C3'" 1 ?
ATOM 73 O "O3'" . G A 1 4 ? 13.553 22.894 8.126 1.000 17.306 0 4 G A "O3'" 1 ?
ATOM 74 C "C2'" . G A 1 4 ? 14.019 21.652 10.210 1.000 12.619 0 4 G A "C2'" 1 ?
ATOM 75 O "O2'" . G A 1 4 ? 15.078 22.504 10.553 1.000 14.384 0 4 G A "O2'" 1 ?
ATOM 76 C "C1'" . G A 1 4 ? 13.144 21.492 11.435 1.000 11.707 0 4 G A "C1'" 1 ?
ATOM 77 N N9 . G A 1 4 ? 12.428 20.237 11.411 1.000 10.769 0 4 G A N9 1 ?
ATOM 78 C C8 . G A 1 4 ? 11.153 20.023 10.964 1.000 10.433 0 4 G A C8 1 ?
ATOM 79 N N7 . G A 1 4 ? 10.763 18.784 11.061 1.000 12.146 0 4 G A N7 1 ?
ATOM 80 C C5 . G A 1 4 ? 11.895 18.103 11.524 1.000 10.115 0 4 G A C5 1 ?
ATOM 81 C C6 . G A 1 4 ? 12.085 16.723 11.811 1.000 10.189 0 4 G A C6 1 ?
ATOM 82 O O6 . G A 1 4 ? 11.270 15.809 11.658 1.000 11.631 0 4 G A O6 1 ?
ATOM 83 N N1 . G A 1 4 ? 13.396 16.479 12.231 1.000 10.169 0 4 G A N1 1 ?
ATOM 84 C C2 . G A 1 4 ? 14.373 17.434 12.409 1.000 11.739 0 4 G A C2 1 ?
ATOM 85 N N2 . G A 1 4 ? 15.597 17.054 12.783 1.000 11.427 0 4 G A N2 1 ?
ATOM 86 N N3 . G A 1 4 ? 14.179 18.733 12.157 1.000 10.984 0 4 G A N3 1 ?
ATOM 87 C C4 . G A 1 4 ? 12.936 18.978 11.716 1.000 10.168 0 4 G A C4 1 ?
ATOM 88 P P . A A 1 5 ? 13.562 22.094 6.738 1.000 17.437 0 5 A A P 1 ?
ATOM 89 O OP1 . A A 1 5 ? 14.181 23.082 5.814 1.000 20.625 0 5 A A OP1 1 ?
ATOM 90 O OP2 . A A 1 5 ? 12.256 21.475 6.413 1.000 18.299 0 5 A A OP2 1 ?
ATOM 91 O "O5'" . A A 1 5 ? 14.591 20.909 7.022 1.000 16.030 0 5 A A "O5'" 1 ?
ATOM 92 C "C5'" . A A 1 5 ? 15.975 21.226 7.389 1.000 15.701 0 5 A A "C5'" 1 ?
ATOM 93 C "C4'" . A A 1 5 ? 16.725 19.936 7.627 1.000 16.317 0 5 A A "C4'" 1 ?
ATOM 94 O "O4'" . A A 1 5 ? 16.242 19.292 8.823 1.000 16.750 0 5 A A "O4'" 1 ?
ATOM 95 C "C3'" . A A 1 5 ? 16.543 18.832 6.588 1.000 17.604 0 5 A A "C3'" 1 ?
ATOM 96 O "O3'" . A A 1 5 ? 17.325 19.109 5.444 1.000 18.367 0 5 A A "O3'" 1 ?
ATOM 97 C "C2'" . A A 1 5 ? 17.005 17.611 7.375 1.000 15.785 0 5 A A "C2'" 1 ?
ATOM 98 O "O2'" . A A 1 5 ? 18.410 17.528 7.500 1.000 18.428 0 5 A A "O2'" 1 ?
ATOM 99 C "C1'" . A A 1 5 ? 16.294 17.889 8.696 1.000 15.769 0 5 A A "C1'" 1 ?
ATOM 100 N N9 . A A 1 5 ? 14.952 17.312 8.720 1.000 15.009 0 5 A A N9 1 ?
ATOM 101 C C8 . A A 1 5 ? 13.740 17.908 8.460 1.000 14.102 0 5 A A C8 1 ?
ATOM 102 N N7 . A A 1 5 ? 12.734 17.081 8.503 1.000 14.350 0 5 A A N7 1 ?
ATOM 103 C C5 . A A 1 5 ? 13.314 15.861 8.808 1.000 12.819 0 5 A A C5 1 ?
ATOM 104 C C6 . A A 1 5 ? 12.780 14.581 8.961 1.000 13.840 0 5 A A C6 1 ?
ATOM 105 N N6 . A A 1 5 ? 11.493 14.336 8.892 1.000 14.566 0 5 A A N6 1 ?
ATOM 106 N N1 . A A 1 5 ? 13.638 13.559 9.204 1.000 13.121 0 5 A A N1 1 ?
ATOM 107 C C2 . A A 1 5 ? 14.940 13.835 9.276 1.000 14.870 0 5 A A C2 1 ?
ATOM 108 N N3 . A A 1 5 ? 15.549 14.996 9.137 1.000 14.759 0 5 A A N3 1 ?
ATOM 109 C C4 . A A 1 5 ? 14.680 15.989 8.898 1.000 13.981 0 5 A A C4 1 ?
ATOM 110 P P . A A 1 6 ? 16.787 18.656 4.009 1.000 20.344 0 6 A A P 1 ?
ATOM 111 O OP1 . A A 1 6 ? 17.696 19.399 3.079 1.000 24.001 0 6 A A OP1 1 ?
ATOM 112 O OP2 . A A 1 6 ? 15.332 18.816 3.805 1.000 20.142 0 6 A A OP2 1 ?
ATOM 113 O "O5'" . A A 1 6 ? 16.979 17.076 3.923 1.000 18.271 0 6 A A "O5'" 1 ?
ATOM 114 C "C5'" . A A 1 6 ? 18.319 16.548 4.082 1.000 18.053 0 6 A A "C5'" 1 ?
ATOM 115 C "C4'" . A A 1 6 ? 18.220 15.054 4.267 1.000 16.960 0 6 A A "C4'" 1 ?
ATOM 116 O "O4'" . A A 1 6 ? 17.543 14.787 5.520 1.000 15.999 0 6 A A "O4'" 1 ?
ATOM 117 C "C3'" . A A 1 6 ? 17.385 14.258 3.278 1.000 18.108 0 6 A A "C3'" 1 ?
ATOM 118 O "O3'" . A A 1 6 ? 18.160 14.079 2.123 1.000 19.355 0 6 A A "O3'" 1 ?
ATOM 119 C "C2'" . A A 1 6 ? 17.209 12.954 4.053 1.000 15.913 0 6 A A "C2'" 1 ?
ATOM 120 O "O2'" . A A 1 6 ? 18.397 12.222 4.133 1.000 17.282 0 6 A A "O2'" 1 ?
ATOM 121 C "C1'" . A A 1 6 ? 16.854 13.555 5.420 1.000 16.048 0 6 A A "C1'" 1 ?
ATOM 122 N N9 . A A 1 6 ? 15.417 13.783 5.548 1.000 16.016 0 6 A A N9 1 ?
ATOM 123 C C8 . A A 1 6 ? 14.706 14.941 5.375 1.000 15.832 0 6 A A C8 1 ?
ATOM 124 N N7 . A A 1 6 ? 13.403 14.804 5.509 1.000 16.711 0 6 A A N7 1 ?
ATOM 125 C C5 . A A 1 6 ? 13.258 13.454 5.781 1.000 14.885 0 6 A A C5 1 ?
ATOM 126 C C6 . A A 1 6 ? 12.124 12.646 6.050 1.000 16.277 0 6 A A C6 1 ?
ATOM 127 N N6 . A A 1 6 ? 10.882 13.090 6.065 1.000 18.550 0 6 A A N6 1 ?
ATOM 128 N N1 . A A 1 6 ? 12.324 11.326 6.262 1.000 14.908 0 6 A A N1 1 ?
ATOM 129 C C2 . A A 1 6 ? 13.559 10.849 6.283 1.000 16.794 0 6 A A C2 1 ?
ATOM 130 N N3 . A A 1 6 ? 14.694 11.498 6.024 1.000 16.481 0 6 A A N3 1 ?
ATOM 131 C C4 . A A 1 6 ? 14.475 12.807 5.797 1.000 16.465 0 6 A A C4 1 ?
ATOM 132 P P . G A 1 7 ? 17.461 13.780 0.722 1.000 22.712 0 7 G A P 1 ?
ATOM 133 O OP1 . G A 1 7 ? 18.446 13.687 -0.392 1.000 28.911 0 7 G A OP1 1 ?
ATOM 134 O OP2 . G A 1 7 ? 16.178 14.450 0.512 1.000 22.332 0 7 G A OP2 1 ?
ATOM 135 O "O5'" . G A 1 7 ? 16.620 12.411 0.869 1.000 21.890 0 7 G A "O5'" 1 ?
ATOM 136 C "C5'" . G A 1 7 ? 17.261 11.187 0.665 1.000 19.370 0 7 G A "C5'" 1 ?
ATOM 137 C "C4'" . G A 1 7 ? 16.343 10.059 1.073 1.000 15.653 0 7 G A "C4'" 1 ?
ATOM 138 O "O4'" . G A 1 7 ? 15.743 10.291 2.372 1.000 14.226 0 7 G A "O4'" 1 ?
ATOM 139 C "C3'" . G A 1 7 ? 15.139 9.667 0.227 1.000 14.570 0 7 G A "C3'" 1 ?
ATOM 140 O "O3'" . G A 1 7 ? 15.586 9.021 -0.930 1.000 14.449 0 7 G A "O3'" 1 ?
ATOM 141 C "C2'" . G A 1 7 ? 14.545 8.633 1.175 1.000 12.751 0 7 G A "C2'" 1 ?
ATOM 142 O "O2'" . G A 1 7 ? 15.355 7.482 1.258 1.000 14.145 0 7 G A "O2'" 1 ?
ATOM 143 C "C1'" . G A 1 7 ? 14.583 9.474 2.448 1.000 13.188 0 7 G A "C1'" 1 ?
ATOM 144 N N9 . G A 1 7 ? 13.403 10.308 2.641 1.000 12.440 0 7 G A N9 1 ?
ATOM 145 C C8 . G A 1 7 ? 13.308 11.677 2.573 1.000 11.158 0 7 G A C8 1 ?
ATOM 146 N N7 . G A 1 7 ? 12.100 12.128 2.810 1.000 11.885 0 7 G A N7 1 ?
ATOM 147 C C5 . G A 1 7 ? 11.373 10.977 3.100 1.000 11.580 0 7 G A C5 1 ?
ATOM 148 C C6 . G A 1 7 ? 10.027 10.820 3.498 1.000 11.722 0 7 G A C6 1 ?
ATOM 149 O O6 . G A 1 7 ? 9.169 11.695 3.641 1.000 13.816 0 7 G A O6 1 ?
ATOM 150 N N1 . G A 1 7 ? 9.704 9.484 3.716 1.000 11.314 0 7 G A N1 1 ?
ATOM 151 C C2 . G A 1 7 ? 10.533 8.412 3.565 1.000 11.419 0 7 G A C2 1 ?
ATOM 152 N N2 . G A 1 7 ? 10.039 7.176 3.776 1.000 12.496 0 7 G A N2 1 ?
ATOM 153 N N3 . G A 1 7 ? 11.802 8.562 3.208 1.000 11.635 0 7 G A N3 1 ?
ATOM 154 C C4 . G A 1 7 ? 12.152 9.855 3.016 1.000 12.175 0 7 G A C4 1 ?
ATOM 155 P P . A A 1 8 ? 14.662 8.852 -2.236 1.000 15.267 0 8 A A P 1 ?
ATOM 156 O OP1 . A A 1 8 ? 15.559 8.427 -3.351 1.000 17.743 0 8 A A OP1 1 ?
ATOM 157 O OP2 . A A 1 8 ? 13.825 10.050 -2.428 1.000 17.757 0 8 A A OP2 1 ?
ATOM 158 O "O5'" . A A 1 8 ? 13.635 7.698 -1.852 1.000 16.319 0 8 A A "O5'" 1 ?
ATOM 159 C "C5'" . A A 1 8 ? 14.114 6.372 -1.672 1.000 16.758 0 8 A A "C5'" 1 ?
ATOM 160 C "C4'" . A A 1 8 ? 12.946 5.501 -1.279 1.000 14.651 0 8 A A "C4'" 1 ?
ATOM 161 O "O4'" . A A 1 8 ? 12.395 5.910 0.005 1.000 14.016 0 8 A A "O4'" 1 ?
ATOM 162 C "C3'" . A A 1 8 ? 11.743 5.577 -2.222 1.000 15.563 0 8 A A "C3'" 1 ?
ATOM 163 O "O3'" . A A 1 8 ? 12.000 4.740 -3.332 1.000 16.111 0 8 A A "O3'" 1 ?
ATOM 164 C "C2'" . A A 1 8 ? 10.658 5.001 -1.327 1.000 15.238 0 8 A A "C2'" 1 ?
ATOM 165 O "O2'" . A A 1 8 ? 10.768 3.610 -1.106 1.000 18.055 0 8 A A "O2'" 1 ?
ATOM 166 C "C1'" . A A 1 8 ? 10.984 5.745 -0.042 1.000 14.444 0 8 A A "C1'" 1 ?
ATOM 167 N N9 . A A 1 8 ? 10.386 7.073 0.056 1.000 12.298 0 8 A A N9 1 ?
ATOM 168 C C8 . A A 1 8 ? 10.995 8.287 -0.151 1.000 12.439 0 8 A A C8 1 ?
ATOM 169 N N7 . A A 1 8 ? 10.228 9.326 0.091 1.000 13.526 0 8 A A N7 1 ?
ATOM 170 C C5 . A A 1 8 ? 9.049 8.750 0.505 1.000 12.139 0 8 A A C5 1 ?
ATOM 171 C C6 . A A 1 8 ? 7.844 9.322 0.933 1.000 11.178 0 8 A A C6 1 ?
ATOM 172 N N6 . A A 1 8 ? 7.616 10.620 1.012 1.000 11.625 0 8 A A N6 1 ?
ATOM 173 N N1 . A A 1 8 ? 6.847 8.466 1.258 1.000 12.987 0 8 A A N1 1 ?
ATOM 174 C C2 . A A 1 8 ? 7.059 7.146 1.181 1.000 13.515 0 8 A A C2 1 ?
ATOM 175 N N3 . A A 1 8 ? 8.152 6.501 0.795 1.000 13.233 0 8 A A N3 1 ?
ATOM 176 C C4 . A A 1 8 ? 9.120 7.371 0.481 1.000 12.691 0 8 A A C4 1 ?
HETATM 177 P P . SUR A 1 9 ? 11.455 5.161 -4.786 1.000 18.309 0 9 SUR A P 1 ?
HETATM 178 O OP1 . SUR A 1 9 ? 12.078 4.089 -5.552 1.000 20.432 0 9 SUR A OP1 1 ?
HETATM 179 O OP2 . SUR A 1 9 ? 11.546 6.539 -5.047 1.000 17.781 0 9 SUR A OP2 1 ?
HETATM 180 O "O5'" . SUR A 1 9 ? 9.927 4.856 -4.654 1.000 18.184 0 9 SUR A "O5'" 1 ?
HETATM 181 C "C5'" . SUR A 1 9 ? 9.456 3.515 -4.632 1.000 18.859 0 9 SUR A "C5'" 1 ?
HETATM 182 C "C4'" . SUR A 1 9 ? 7.984 3.503 -4.236 1.000 17.227 0 9 SUR A "C4'" 1 ?
HETATM 183 O "O4'" . SUR A 1 9 ? 7.849 4.145 -2.952 1.000 17.337 0 9 SUR A "O4'" 1 ?
HETATM 184 C "C3'" . SUR A 1 9 ? 7.106 4.370 -5.098 1.000 17.927 0 9 SUR A "C3'" 1 ?
HETATM 185 C "C1'" . SUR A 1 9 ? 6.593 4.871 -2.902 1.000 15.843 0 9 SUR A "C1'" 1 ?
HETATM 186 N N1 . SUR A 1 9 ? 6.839 6.315 -2.718 1.000 14.132 0 9 SUR A N1 1 ?
HETATM 187 C "C2'" . SUR A 1 9 ? 5.957 4.537 -4.195 1.000 16.936 0 9 SUR A "C2'" 1 ?
HETATM 188 C C6 . SUR A 1 9 ? 8.064 6.912 -3.032 1.000 13.444 0 9 SUR A C6 1 ?
HETATM 189 C C2 . SUR A 1 9 ? 5.840 7.090 -2.250 1.000 13.679 0 9 SUR A C2 1 ?
HETATM 190 C C5 . SUR A 1 9 ? 8.321 8.245 -2.836 1.000 12.825 0 9 SUR A C5 1 ?
HETATM 191 S S2 . SUR A 1 9 ? 4.275 6.506 -1.893 1.000 16.477 0 9 SUR A S2 1 ?
HETATM 192 N N3 . SUR A 1 9 ? 6.079 8.427 -2.096 1.000 12.696 0 9 SUR A N3 1 ?
HETATM 193 C C4 . SUR A 1 9 ? 7.272 9.039 -2.346 1.000 12.629 0 9 SUR A C4 1 ?
HETATM 194 O O4 . SUR A 1 9 ? 7.388 10.237 -2.110 1.000 14.887 0 9 SUR A O4 1 ?
HETATM 195 O "O2'" . SUR A 1 9 ? 5.173 3.358 -4.000 1.000 19.733 0 9 SUR A "O2'" 1 ?
HETATM 196 O "O3'" . SUR A 1 9 ? 6.781 3.677 -6.318 1.000 19.495 0 9 SUR A "O3'" 1 ?
ATOM 197 P P . C A 1 10 ? 6.620 4.552 -7.637 1.000 22.542 0 10 C A P 1 ?
ATOM 198 O OP1 . C A 1 10 ? 6.441 3.598 -8.836 1.000 27.994 0 10 C A OP1 1 ?
ATOM 199 O OP2 . C A 1 10 ? 7.619 5.680 -7.885 1.000 23.500 0 10 C A OP2 1 ?
ATOM 200 O "O5'" . C A 1 10 ? 5.222 5.342 -7.480 1.000 20.121 0 10 C A "O5'" 1 ?
ATOM 201 C "C5'" . C A 1 10 ? 4.010 4.579 -7.256 1.000 19.736 0 10 C A "C5'" 1 ?
ATOM 202 C "C4'" . C A 1 10 ? 2.909 5.473 -6.719 1.000 18.615 0 10 C A "C4'" 1 ?
ATOM 203 O "O4'" . C A 1 10 ? 3.305 6.024 -5.442 1.000 18.229 0 10 C A "O4'" 1 ?
ATOM 204 C "C3'" . C A 1 10 ? 2.549 6.711 -7.550 1.000 18.418 0 10 C A "C3'" 1 ?
ATOM 205 O "O3'" . C A 1 10 ? 1.794 6.372 -8.706 1.000 20.829 0 10 C A "O3'" 1 ?
ATOM 206 C "C2'" . C A 1 10 ? 1.769 7.478 -6.491 1.000 17.224 0 10 C A "C2'" 1 ?
ATOM 207 O "O2'" . C A 1 10 ? 0.498 6.960 -6.206 1.000 19.483 0 10 C A "O2'" 1 ?
ATOM 208 C "C1'" . C A 1 10 ? 2.678 7.272 -5.276 1.000 16.084 0 10 C A "C1'" 1 ?
ATOM 209 N N1 . C A 1 10 ? 3.726 8.311 -5.194 1.000 14.047 0 10 C A N1 1 ?
ATOM 210 C C2 . C A 1 10 ? 3.332 9.562 -4.696 1.000 13.268 0 10 C A C2 1 ?
ATOM 211 O O2 . C A 1 10 ? 2.137 9.724 -4.399 1.000 14.896 0 10 C A O2 1 ?
ATOM 212 N N3 . C A 1 10 ? 4.258 10.544 -4.627 1.000 12.416 0 10 C A N3 1 ?
ATOM 213 C C4 . C A 1 10 ? 5.508 10.319 -5.023 1.000 12.850 0 10 C A C4 1 ?
ATOM 214 N N4 . C A 1 10 ? 6.385 11.291 -4.899 1.000 12.753 0 10 C A N4 1 ?
ATOM 215 C C5 . C A 1 10 ? 5.914 9.060 -5.550 1.000 12.848 0 10 C A C5 1 ?
ATOM 216 C C6 . C A 1 10 ? 4.987 8.104 -5.647 1.000 13.966 0 10 C A C6 1 ?
ATOM 217 P P . U A 1 11 ? 1.858 7.287 -10.019 1.000 21.225 0 11 U A P 1 ?
ATOM 218 O OP1 . U A 1 11 ? 1.121 6.573 -11.106 1.000 25.458 0 11 U A OP1 1 ?
ATOM 219 O OP2 . U A 1 11 ? 3.225 7.791 -10.310 1.000 22.555 0 11 U A OP2 1 ?
ATOM 220 O "O5'" . U A 1 11 ? 1.057 8.603 -9.568 1.000 18.595 0 11 U A "O5'" 1 ?
ATOM 221 C "C5'" . U A 1 11 ? -0.301 8.496 -9.131 1.000 18.754 0 11 U A "C5'" 1 ?
ATOM 222 C "C4'" . U A 1 11 ? -0.801 9.831 -8.609 1.000 17.670 0 11 U A "C4'" 1 ?
ATOM 223 O "O4'" . U A 1 11 ? -0.137 10.207 -7.381 1.000 20.099 0 11 U A "O4'" 1 ?
ATOM 224 C "C3'" . U A 1 11 ? -0.537 11.052 -9.497 1.000 19.319 0 11 U A "C3'" 1 ?
ATOM 225 O "O3'" . U A 1 11 ? -1.463 11.070 -10.560 1.000 19.282 0 11 U A "O3'" 1 ?
ATOM 226 C "C2'" . U A 1 11 ? -0.830 12.172 -8.497 1.000 18.256 0 11 U A "C2'" 1 ?
ATOM 227 O "O2'" . U A 1 11 ? -2.172 12.295 -8.066 1.000 19.991 0 11 U A "O2'" 1 ?
ATOM 228 C "C1'" . U A 1 11 ? -0.029 11.625 -7.327 1.000 17.712 0 11 U A "C1'" 1 ?
ATOM 229 N N1 . U A 1 11 ? 1.381 12.023 -7.352 1.000 16.394 0 11 U A N1 1 ?
ATOM 230 C C2 . U A 1 11 ? 1.682 13.314 -6.918 1.000 14.606 0 11 U A C2 1 ?
ATOM 231 O O2 . U A 1 11 ? 0.818 14.106 -6.604 1.000 20.463 0 11 U A O2 1 ?
ATOM 232 N N3 . U A 1 11 ? 3.002 13.618 -6.880 1.000 16.513 0 11 U A N3 1 ?
ATOM 233 C C4 . U A 1 11 ? 4.061 12.821 -7.215 1.000 14.204 0 11 U A C4 1 ?
ATOM 234 O O4 . U A 1 11 ? 5.207 13.253 -7.176 1.000 20.192 0 11 U A O4 1 ?
ATOM 235 C C5 . U A 1 11 ? 3.672 11.541 -7.724 1.000 16.530 0 11 U A C5 1 ?
ATOM 236 C C6 . U A 1 11 ? 2.385 11.193 -7.741 1.000 14.850 0 11 U A C6 1 ?
ATOM 237 P P . U A 1 12 ? -1.152 11.724 -11.995 1.000 19.562 0 12 U A P 1 ?
ATOM 238 O OP1 . U A 1 12 ? -2.260 11.210 -12.832 1.000 21.033 0 12 U A OP1 1 ?
ATOM 239 O OP2 . U A 1 12 ? 0.255 11.467 -12.391 1.000 20.638 0 12 U A OP2 1 ?
ATOM 240 O "O5'" . U A 1 12 ? -1.198 13.304 -11.788 1.000 15.545 0 12 U A "O5'" 1 ?
ATOM 241 C "C5'" . U A 1 12 ? -2.449 13.929 -11.408 1.000 15.023 0 12 U A "C5'" 1 ?
ATOM 242 C "C4'" . U A 1 12 ? -2.155 15.381 -11.196 1.000 15.024 0 12 U A "C4'" 1 ?
ATOM 243 O "O4'" . U A 1 12 ? -1.343 15.539 -10.009 1.000 16.863 0 12 U A "O4'" 1 ?
ATOM 244 C "C3'" . U A 1 12 ? -1.321 16.073 -12.272 1.000 15.241 0 12 U A "C3'" 1 ?
ATOM 245 O "O3'" . U A 1 12 ? -2.139 16.271 -13.407 1.000 14.513 0 12 U A "O3'" 1 ?
ATOM 246 C "C2'" . U A 1 12 ? -0.923 17.324 -11.509 1.000 14.713 0 12 U A "C2'" 1 ?
ATOM 247 O "O2'" . U A 1 12 ? -2.025 18.174 -11.282 1.000 15.054 0 12 U A "O2'" 1 ?
ATOM 248 C "C1'" . U A 1 12 ? -0.530 16.674 -10.188 1.000 15.547 0 12 U A "C1'" 1 ?
ATOM 249 N N1 . U A 1 12 ? 0.859 16.204 -10.120 1.000 15.931 0 12 U A N1 1 ?
ATOM 250 C C2 . U A 1 12 ? 1.781 17.165 -9.782 1.000 15.012 0 12 U A C2 1 ?
ATOM 251 O O2 . U A 1 12 ? 1.501 18.351 -9.659 1.000 16.226 0 12 U A O2 1 ?
ATOM 252 N N3 . U A 1 12 ? 3.055 16.696 -9.642 1.000 14.441 0 12 U A N3 1 ?
ATOM 253 C C4 . U A 1 12 ? 3.473 15.396 -9.796 1.000 15.369 0 12 U A C4 1 ?
ATOM 254 O O4 . U A 1 12 ? 4.655 15.155 -9.604 1.000 16.983 0 12 U A O4 1 ?
ATOM 255 C C5 . U A 1 12 ? 2.455 14.455 -10.157 1.000 15.006 0 12 U A C5 1 ?
ATOM 256 C C6 . U A 1 12 ? 1.193 14.886 -10.311 1.000 15.024 0 12 U A C6 1 ?
ATOM 257 P P . C A 1 13 ? -1.485 16.342 -14.851 1.000 14.244 0 13 C A P 1 ?
ATOM 258 O OP1 . C A 1 13 ? -2.641 16.387 -15.793 1.000 15.125 0 13 C A OP1 1 ?
ATOM 259 O OP2 . C A 1 13 ? -0.445 15.292 -15.120 1.000 15.839 0 13 C A OP2 1 ?
ATOM 260 O "O5'" . C A 1 13 ? -0.600 17.659 -14.937 1.000 13.921 0 13 C A "O5'" 1 ?
ATOM 261 C "C5'" . C A 1 13 ? -1.266 18.901 -14.951 1.000 12.520 0 13 C A "C5'" 1 ?
ATOM 262 C "C4'" . C A 1 13 ? -0.261 20.009 -14.793 1.000 11.892 0 13 C A "C4'" 1 ?
ATOM 263 O "O4'" . C A 1 13 ? 0.383 19.857 -13.513 1.000 12.488 0 13 C A "O4'" 1 ?
ATOM 264 C "C3'" . C A 1 13 ? 0.914 20.055 -15.778 1.000 11.830 0 13 C A "C3'" 1 ?
ATOM 265 O "O3'" . C A 1 13 ? 0.513 20.604 -17.018 1.000 11.444 0 13 C A "O3'" 1 ?
ATOM 266 C "C2'" . C A 1 13 ? 1.850 20.981 -14.999 1.000 11.582 0 13 C A "C2'" 1 ?
ATOM 267 O "O2'" . C A 1 13 ? 1.449 22.332 -15.011 1.000 12.545 0 13 C A "O2'" 1 ?
ATOM 268 C "C1'" . C A 1 13 ? 1.695 20.394 -13.597 1.000 12.309 0 13 C A "C1'" 1 ?
ATOM 269 N N1 . C A 1 13 ? 2.689 19.324 -13.304 1.000 12.097 0 13 C A N1 1 ?
ATOM 270 C C2 . C A 1 13 ? 3.983 19.726 -12.926 1.000 11.657 0 13 C A C2 1 ?
ATOM 271 O O2 . C A 1 13 ? 4.248 20.934 -12.932 1.000 13.201 0 13 C A O2 1 ?
ATOM 272 N N3 . C A 1 13 ? 4.915 18.778 -12.672 1.000 12.075 0 13 C A N3 1 ?
ATOM 273 C C4 . C A 1 13 ? 4.586 17.481 -12.712 1.000 11.197 0 13 C A C4 1 ?
ATOM 274 N N4 . C A 1 13 ? 5.502 16.586 -12.395 1.000 11.385 0 13 C A N4 1 ?
ATOM 275 C C5 . C A 1 13 ? 3.275 17.052 -13.085 1.000 11.744 0 13 C A C5 1 ?
ATOM 276 C C6 . C A 1 13 ? 2.380 18.004 -13.377 1.000 11.531 0 13 C A C6 1 ?
ATOM 277 P P . U A 1 14 ? 1.211 20.225 -18.392 1.000 12.620 0 14 U A P 1 ?
ATOM 278 O OP1 . U A 1 14 ? 0.425 20.843 -19.497 1.000 14.951 0 14 U A OP1 1 ?
ATOM 279 O OP2 . U A 1 14 ? 1.456 18.795 -18.377 1.000 13.993 0 14 U A OP2 1 ?
ATOM 280 O "O5'" . U A 1 14 ? 2.695 20.838 -18.319 1.000 11.273 0 14 U A "O5'" 1 ?
ATOM 281 C "C5'" . U A 1 14 ? 2.824 22.256 -18.460 1.000 12.551 0 14 U A "C5'" 1 ?
ATOM 282 C "C4'" . U A 1 14 ? 4.201 22.698 -18.056 1.000 9.951 0 14 U A "C4'" 1 ?
ATOM 283 O "O4'" . U A 1 14 ? 4.538 22.300 -16.731 1.000 9.558 0 14 U A "O4'" 1 ?
ATOM 284 C "C3'" . U A 1 14 ? 5.378 22.203 -18.902 1.000 8.805 0 14 U A "C3'" 1 ?
ATOM 285 O "O3'" . U A 1 14 ? 5.462 22.961 -20.097 1.000 9.535 0 14 U A "O3'" 1 ?
ATOM 286 C "C2'" . U A 1 14 ? 6.533 22.533 -17.962 1.000 8.452 0 14 U A "C2'" 1 ?
ATOM 287 O "O2'" . U A 1 14 ? 6.690 23.945 -17.909 1.000 8.655 0 14 U A "O2'" 1 ?
ATOM 288 C "C1'" . U A 1 14 ? 5.932 22.022 -16.659 1.000 8.734 0 14 U A "C1'" 1 ?
ATOM 289 N N1 . U A 1 14 ? 6.151 20.588 -16.398 1.000 8.254 0 14 U A N1 1 ?
ATOM 290 C C2 . U A 1 14 ? 7.383 20.239 -15.861 1.000 7.890 0 14 U A C2 1 ?
ATOM 291 O O2 . U A 1 14 ? 8.318 21.031 -15.770 1.000 8.652 0 14 U A O2 1 ?
ATOM 292 N N3 . U A 1 14 ? 7.490 18.906 -15.546 1.000 7.542 0 14 U A N3 1 ?
ATOM 293 C C4 . U A 1 14 ? 6.525 17.944 -15.662 1.000 8.387 0 14 U A C4 1 ?
ATOM 294 O O4 . U A 1 14 ? 6.785 16.798 -15.335 1.000 9.868 0 14 U A O4 1 ?
ATOM 295 C C5 . U A 1 14 ? 5.278 18.398 -16.184 1.000 8.919 0 14 U A C5 1 ?
ATOM 296 C C6 . U A 1 14 ? 5.135 19.675 -16.541 1.000 8.863 0 14 U A C6 1 ?
ATOM 297 P P . C A 1 15 ? 6.143 22.383 -21.419 1.000 10.645 0 15 C A P 1 ?
ATOM 298 O OP1 . C A 1 15 ? 5.782 23.306 -22.519 1.000 12.843 0 15 C A OP1 1 ?
ATOM 299 O OP2 . C A 1 15 ? 5.863 20.935 -21.584 1.000 12.004 0 15 C A OP2 1 ?
ATOM 300 O "O5'" . C A 1 15 ? 7.697 22.447 -21.098 1.000 9.550 0 15 C A "O5'" 1 ?
ATOM 301 C "C5'" . C A 1 15 ? 8.374 23.711 -21.000 1.000 9.327 0 15 C A "C5'" 1 ?
ATOM 302 C "C4'" . C A 1 15 ? 9.734 23.462 -20.382 1.000 9.464 0 15 C A "C4'" 1 ?
ATOM 303 O "O4'" . C A 1 15 ? 9.642 22.813 -19.087 1.000 8.077 0 15 C A "O4'" 1 ?
ATOM 304 C "C3'" . C A 1 15 ? 10.647 22.530 -21.177 1.000 9.762 0 15 C A "C3'" 1 ?
ATOM 305 O "O3'" . C A 1 15 ? 11.286 23.224 -22.237 1.000 11.017 0 15 C A "O3'" 1 ?
ATOM 306 C "C2'" . C A 1 15 ? 11.662 22.170 -20.119 1.000 9.152 0 15 C A "C2'" 1 ?
ATOM 307 O "O2'" . C A 1 15 ? 12.504 23.249 -19.768 1.000 9.879 0 15 C A "O2'" 1 ?
ATOM 308 C "C1'" . C A 1 15 ? 10.737 21.918 -18.941 1.000 7.957 0 15 C A "C1'" 1 ?
ATOM 309 N N1 . C A 1 15 ? 10.202 20.537 -18.852 1.000 8.500 0 15 C A N1 1 ?
ATOM 310 C C2 . C A 1 15 ? 11.011 19.554 -18.268 1.000 8.331 0 15 C A C2 1 ?
ATOM 311 O O2 . C A 1 15 ? 12.187 19.850 -17.947 1.000 8.811 0 15 C A O2 1 ?
ATOM 312 N N3 . C A 1 15 ? 10.422 18.351 -18.021 1.000 7.733 0 15 C A N3 1 ?
ATOM 313 C C4 . C A 1 15 ? 9.171 18.092 -18.384 1.000 8.320 0 15 C A C4 1 ?
ATOM 314 N N4 . C A 1 15 ? 8.700 16.874 -18.114 1.000 8.944 0 15 C A N4 1 ?
ATOM 315 C C5 . C A 1 15 ? 8.388 19.048 -19.048 1.000 7.864 0 15 C A C5 1 ?
ATOM 316 C C6 . C A 1 15 ? 8.933 20.253 -19.254 1.000 8.337 0 15 C A C6 1 ?
ATOM 317 P P . U A 1 16 ? 11.503 22.528 -23.640 1.000 12.410 0 16 U A P 1 ?
ATOM 318 O OP1 . U A 1 16 ? 12.056 23.647 -24.453 1.000 13.947 0 16 U A OP1 1 ?
ATOM 319 O OP2 . U A 1 16 ? 10.325 21.800 -24.087 1.000 13.682 0 16 U A OP2 1 ?
ATOM 320 O "O5'" . U A 1 16 ? 12.585 21.380 -23.336 1.000 9.939 0 16 U A "O5'" 1 ?
ATOM 321 C "C5'" . U A 1 16 ? 13.919 21.819 -22.979 1.000 9.597 0 16 U A "C5'" 1 ?
ATOM 322 C "C4'" . U A 1 16 ? 14.719 20.631 -22.533 1.000 9.219 0 16 U A "C4'" 1 ?
ATOM 323 O "O4'" . U A 1 16 ? 14.170 20.111 -21.300 1.000 8.332 0 16 U A "O4'" 1 ?
ATOM 324 C "C3'" . U A 1 16 ? 14.763 19.413 -23.468 1.000 8.904 0 16 U A "C3'" 1 ?
ATOM 325 O "O3'" . U A 1 16 ? 15.646 19.602 -24.578 1.000 10.191 0 16 U A "O3'" 1 ?
ATOM 326 C "C2'" . U A 1 16 ? 15.225 18.365 -22.488 1.000 8.989 0 16 U A "C2'" 1 ?
ATOM 327 O "O2'" . U A 1 16 ? 16.609 18.496 -22.229 1.000 10.079 0 16 U A "O2'" 1 ?
ATOM 328 C "C1'" . U A 1 16 ? 14.400 18.719 -21.248 1.000 8.664 0 16 U A "C1'" 1 ?
ATOM 329 N N1 . U A 1 16 ? 13.082 18.042 -21.175 1.000 8.493 0 16 U A N1 1 ?
ATOM 330 C C2 . U A 1 16 ? 13.089 16.770 -20.638 1.000 8.680 0 16 U A C2 1 ?
ATOM 331 O O2 . U A 1 16 ? 14.099 16.203 -20.278 1.000 9.193 0 16 U A O2 1 ?
ATOM 332 N N3 . U A 1 16 ? 11.869 16.175 -20.570 1.000 7.979 0 16 U A N3 1 ?
ATOM 333 C C4 . U A 1 16 ? 10.680 16.667 -21.040 1.000 8.645 0 16 U A C4 1 ?
ATOM 334 O O4 . U A 1 16 ? 9.676 15.943 -20.939 1.000 9.870 0 16 U A O4 1 ?
ATOM 335 C C5 . U A 1 16 ? 10.736 17.993 -21.603 1.000 8.320 0 16 U A C5 1 ?
ATOM 336 C C6 . U A 1 16 ? 11.927 18.615 -21.669 1.000 8.073 0 16 U A C6 1 ?
HETATM 337 MG MG . MG B 2 . ? 10.083 15.992 3.369 1.000 25.357 0 101 MG A MG 1 ?
HETATM 338 MG MG . MG C 2 . ? 7.222 15.824 10.181 1.000 27.604 0 102 MG A MG 1 ?
HETATM 339 MG MG . MG D 2 . ? -0.000 23.668 -16.691 0.330 23.027 0 103 MG A MG 1 ?
HETATM 340 O O . HOH E 3 . ? -0.179 18.330 9.761 1.000 25.797 0 201 HOH A O 1 ?
HETATM 341 O O . HOH E 3 . ? 15.237 8.713 -5.782 1.000 48.380 0 202 HOH A O 1 ?
HETATM 342 O O . HOH E 3 . ? -4.181 11.125 -8.913 1.000 28.271 0 203 HOH A O 1 ?
HETATM 343 O O . HOH E 3 . ? 16.601 9.948 6.376 1.000 50.883 0 204 HOH A O 1 ?
HETATM 344 O O . HOH E 3 . ? 0.378 20.581 -10.010 1.000 39.494 0 205 HOH A O 1 ?
HETATM 345 O O . HOH E 3 . ? 9.433 24.809 5.698 1.000 23.584 0 206 HOH A O 1 ?
HETATM 346 O O . HOH E 3 . ? -0.753 20.345 -21.677 1.000 35.897 0 207 HOH A O 1 ?
HETATM 347 O O . HOH E 3 . ? -3.318 14.369 -17.157 1.000 40.628 0 208 HOH A O 1 ?
HETATM 348 O O . HOH E 3 . ? 15.434 23.775 12.752 1.000 41.504 0 209 HOH A O 1 ?
HETATM 349 O O . HOH E 3 . ? 1.265 10.273 16.374 1.000 44.184 0 210 HOH A O 1 ?
HETATM 350 O O . HOH E 3 . ? 8.889 15.259 10.804 1.000 25.476 0 211 HOH A O 1 ?
HETATM 351 O O . HOH E 3 . ? 9.093 7.331 -6.541 1.000 24.313 0 212 HOH A O 1 ?
HETATM 352 O O . HOH E 3 . ? 11.906 26.176 -24.989 1.000 49.119 0 213 HOH A O 1 ?
HETATM 353 O O . HOH E 3 . ? 1.378 21.722 -21.743 1.000 49.457 0 214 HOH A O 1 ?
HETATM 354 O O . HOH E 3 . ? 5.373 14.650 -15.683 1.000 24.168 0 215 HOH A O 1 ?
HETATM 355 O O . HOH E 3 . ? 11.846 24.938 -17.911 1.000 23.292 0 216 HOH A O 1 ?
HETATM 356 O O . HOH E 3 . ? 11.184 16.129 5.244 1.000 25.248 0 217 HOH A O 1 ?
HETATM 357 O O . HOH E 3 . ? 8.608 19.389 9.694 1.000 28.404 0 218 HOH A O 1 ?
HETATM 358 O O . HOH E 3 . ? 8.731 14.293 3.607 1.000 27.557 0 219 HOH A O 1 ?
HETATM 359 O O . HOH E 3 . ? 15.949 17.399 -26.012 1.000 27.543 0 220 HOH A O 1 ?
HETATM 360 O O . HOH E 3 . ? 7.522 12.494 -8.211 1.000 39.631 0 221 HOH A O 1 ?
HETATM 361 O O . HOH E 3 . ? 4.437 15.066 14.123 1.000 26.322 0 222 HOH A O 1 ?
HETATM 362 O O . HOH E 3 . ? 9.114 26.819 8.533 1.000 33.261 0 223 HOH A O 1 ?
HETATM 363 O O . HOH E 3 . ? 3.441 17.547 -19.668 1.000 26.835 0 224 HOH A O 1 ?
HETATM 364 O O . HOH E 3 . ? 19.220 15.116 -2.526 1.000 31.119 0 225 HOH A O 1 ?
HETATM 365 O O . HOH E 3 . ? 10.699 22.624 4.553 1.000 35.142 0 226 HOH A O 1 ?
HETATM 366 O O . HOH E 3 . ? -2.029 20.833 -11.700 1.000 19.968 0 227 HOH A O 1 ?
HETATM 367 O O . HOH E 3 . ? -0.384 8.752 -4.395 1.000 33.270 0 228 HOH A O 1 ?
HETATM 368 O O . HOH E 3 . ? 18.229 14.820 8.887 1.000 28.034 0 229 HOH A O 1 ?
HETATM 369 O O . HOH E 3 . ? 13.074 25.315 4.775 1.000 37.684 0 230 HOH A O 1 ?
HETATM 370 O O . HOH E 3 . ? 6.276 13.269 -10.678 1.000 41.078 0 231 HOH A O 1 ?
HETATM 371 O O . HOH E 3 . ? 7.123 16.415 -21.749 1.000 19.853 0 232 HOH A O 1 ?
HETATM 372 O O . HOH E 3 . ? 5.869 25.989 -22.033 1.000 37.756 0 233 HOH A O 1 ?
HETATM 373 O O . HOH E 3 . ? 7.333 3.952 1.343 1.000 51.610 0 234 HOH A O 1 ?
HETATM 374 O O . HOH E 3 . ? 20.497 11.834 2.408 0.330 21.417 0 235 HOH A O 1 ?
HETATM 375 O O . HOH E 3 . ? 6.381 16.106 12.074 1.000 17.675 0 236 HOH A O 1 ?
HETATM 376 O O . HOH E 3 . ? 2.769 11.327 -11.290 1.000 38.404 0 237 HOH A O 1 ?
HETATM 377 O O . HOH E 3 . ? 9.848 20.316 7.058 1.000 25.602 0 238 HOH A O 1 ?
HETATM 378 O O . HOH E 3 . ? -0.372 16.399 -5.663 1.000 37.156 0 239 HOH A O 1 ?
HETATM 379 O O . HOH E 3 . ? 10.340 25.020 -26.126 1.000 50.834 0 240 HOH A O 1 ?
HETATM 380 O O . HOH E 3 . ? 5.390 23.152 16.401 1.000 23.147 0 241 HOH A O 1 ?
HETATM 381 O O . HOH E 3 . ? 20.497 11.834 -0.301 0.330 26.553 0 242 HOH A O 1 ?
HETATM 382 O O . HOH E 3 . ? 8.517 2.367 -0.073 1.000 37.571 0 243 HOH A O 1 ?
HETATM 383 O O . HOH E 3 . ? 10.225 17.663 7.480 1.000 19.133 0 244 HOH A O 1 ?
HETATM 384 O O . HOH E 3 . ? 6.368 19.590 9.549 1.000 35.269 0 245 HOH A O 1 ?
HETATM 385 O O . HOH E 3 . ? 5.924 26.219 -19.328 1.000 16.368 0 246 HOH A O 1 ?
HETATM 386 O O . HOH E 3 . ? 16.458 14.712 -20.259 1.000 25.945 0 247 HOH A O 1 ?
HETATM 387 O O . HOH E 3 . ? 11.456 14.850 2.621 1.000 20.289 0 248 HOH A O 1 ?
HETATM 388 O O . HOH E 3 . ? 5.961 25.196 7.518 1.000 28.869 0 249 HOH A O 1 ?
HETATM 389 O O . HOH E 3 . ? 7.257 13.923 16.005 1.000 16.610 0 250 HOH A O 1 ?
HETATM 390 O O . HOH E 3 . ? 9.243 12.320 -2.450 1.000 24.696 0 251 HOH A O 1 ?
HETATM 391 O O . HOH E 3 . ? 15.710 21.869 -26.244 1.000 14.242 0 252 HOH A O 1 ?
HETATM 392 O O . HOH E 3 . ? 11.933 11.373 -0.817 1.000 25.782 0 253 HOH A O 1 ?
HETATM 393 O O . HOH E 3 . ? 3.961 17.145 11.240 1.000 33.282 0 254 HOH A O 1 ?
HETATM 394 O O . HOH E 3 . ? 1.543 13.759 -13.837 1.000 23.015 0 255 HOH A O 1 ?
HETATM 395 O O . HOH E 3 . ? 1.398 19.333 18.580 1.000 23.457 0 256 HOH A O 1 ?
HETATM 396 O O . HOH E 3 . ? -0.000 23.668 -19.675 0.330 21.355 0 257 HOH A O 1 ?
HETATM 397 O O . HOH E 3 . ? 8.618 26.458 11.580 1.000 23.860 0 258 HOH A O 1 ?
HETATM 398 O O . HOH E 3 . ? 17.484 6.334 -0.311 1.000 21.902 0 259 HOH A O 1 ?
HETATM 399 O O . HOH E 3 . ? 12.663 18.877 5.228 1.000 25.749 0 260 HOH A O 1 ?
HETATM 400 O O . HOH E 3 . ? 5.577 11.472 18.252 1.000 43.887 0 261 HOH A O 1 ?
HETATM 401 O O . HOH E 3 . ? 14.340 24.495 -26.016 1.000 28.476 0 262 HOH A O 1 ?
HETATM 402 O O . HOH E 3 . ? 8.361 19.907 -23.112 1.000 23.128 0 263 HOH A O 1 ?
HETATM 403 O O . HOH E 3 . ? 11.694 4.803 3.511 1.000 34.347 0 264 HOH A O 1 ?
HETATM 404 O O . HOH E 3 . ? 2.020 16.517 -16.653 1.000 22.696 0 265 HOH A O 1 ?
HETATM 405 O O . HOH E 3 . ? 11.365 9.176 -3.824 1.000 21.542 0 266 HOH A O 1 ?
HETATM 406 O O . HOH E 3 . ? 16.713 21.524 1.330 1.000 43.693 0 267 HOH A O 1 ?
HETATM 407 O O . HOH E 3 . ? 16.814 6.071 -4.547 1.000 29.443 0 268 HOH A O 1 ?
HETATM 408 O O . HOH E 3 . ? 13.013 23.011 -27.164 1.000 35.868 0 269 HOH A O 1 ?
HETATM 409 O O . HOH E 3 . ? -1.608 12.626 -15.616 1.000 36.201 0 270 HOH A O 1 ?
HETATM 410 O O . HOH E 3 . ? 5.980 16.273 -19.117 1.000 18.175 0 271 HOH A O 1 ?
HETATM 411 O O . HOH E 3 . ? 4.616 13.812 -13.094 1.000 26.429 0 272 HOH A O 1 ?
HETATM 412 O O . HOH E 3 . ? 13.965 15.640 2.144 1.000 37.650 0 273 HOH A O 1 ?
HETATM 413 O O . HOH E 3 . ? 7.599 8.530 -8.904 1.000 47.336 0 274 HOH A O 1 ?
HETATM 414 O O . HOH E 3 . ? 5.814 22.307 6.528 1.000 38.216 0 275 HOH A O 1 ?
HETATM 415 O O . HOH E 3 . ? 12.689 1.716 -2.485 1.000 35.234 0 276 HOH A O 1 ?
HETATM 416 O O . HOH E 3 . ? 9.101 13.202 0.454 1.000 29.931 0 277 HOH A O 1 ?
HETATM 417 O O . HOH E 3 . ? 10.072 23.329 -14.836 1.000 32.866 0 278 HOH A O 1 ?
HETATM 418 O O . HOH E 3 . ? 7.751 13.546 13.149 1.000 23.004 0 279 HOH A O 1 ?
HETATM 419 O O . HOH E 3 . ? 8.087 17.655 10.051 1.000 24.773 0 280 HOH A O 1 ?
HETATM 420 O O . HOH E 3 . ? 9.339 10.645 -5.647 1.000 24.153 0 281 HOH A O 1 ?
HETATM 421 O O . HOH E 3 . ? 17.343 13.000 -3.343 1.000 42.116 0 282 HOH A O 1 ?
HETATM 422 O O . HOH E 3 . ? 0.345 5.145 -3.396 1.000 36.903 0 283 HOH A O 1 ?
HETATM 423 O O . HOH E 3 . ? 6.800 11.866 20.464 0.500 36.812 0 284 HOH A O 1 ?
HETATM 424 O O . HOH E 3 . ? -0.000 23.668 -12.238 0.330 21.002 0 285 HOH A O 1 ?
HETATM 425 O O . HOH E 3 . ? 8.451 15.776 8.282 1.000 29.211 0 286 HOH A O 1 ?
HETATM 426 O O . HOH E 3 . ? 20.497 11.834 6.874 0.330 36.641 0 287 HOH A O 1 ?
HETATM 427 O O . HOH E 3 . ? 8.165 12.204 17.913 1.000 39.923 0 288 HOH A O 1 ?
HETATM 428 O O . HOH E 3 . ? 12.769 13.790 -0.509 1.000 32.226 0 289 HOH A O 1 ?
HETATM 429 O O . HOH E 3 . ? 14.373 22.347 2.121 1.000 55.213 0 290 HOH A O 1 ?
HETATM 430 O O . HOH E 3 . ? 2.506 22.033 18.618 1.000 38.885 0 291 HOH A O 1 ?
HETATM 431 O O . HOH E 3 . ? 11.731 7.587 -8.981 1.000 37.011 0 292 HOH A O 1 ?
HETATM 432 O O . HOH E 3 . ? 14.646 1.923 -0.441 1.000 36.848 0 293 HOH A O 1 ?
HETATM 433 O O . HOH E 3 . ? 7.854 19.700 4.725 1.000 47.708 0 294 HOH A O 1 ?
HETATM 434 O O . HOH E 3 . ? 11.054 17.813 2.977 1.000 29.115 0 295 HOH A O 1 ?
HETATM 435 O O . HOH E 3 . ? 10.167 27.913 10.169 1.000 42.671 0 296 HOH A O 1 ?
HETATM 436 O O . HOH E 3 . ? 1.308 23.323 -23.668 1.000 49.811 0 297 HOH A O 1 ?
HETATM 437 O O . HOH E 3 . ? 4.480 3.360 0.907 1.000 53.990 0 298 HOH A O 1 ?
HETATM 438 O O . HOH E 3 . ? 9.213 16.138 1.615 1.000 39.715 0 299 HOH A O 1 ?
HETATM 439 O O . HOH E 3 . ? 8.365 17.102 4.246 1.000 34.794 0 300 HOH A O 1 ?
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