data_9KCC
#
_entry.id 9KCC
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.404
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 9KCC pdb_00009kcc 10.2210/pdb9kcc/pdb
WWPDB D_1300053276 ? ?
#
_pdbx_audit_revision_history.ordinal 1
_pdbx_audit_revision_history.data_content_type 'Structure model'
_pdbx_audit_revision_history.major_revision 1
_pdbx_audit_revision_history.minor_revision 0
_pdbx_audit_revision_history.revision_date 2025-09-10
_pdbx_audit_revision_history.part_number ?
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 9KCC
_pdbx_database_status.recvd_initial_deposition_date 2024-11-01
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email j.kondo@sophia.ac.jp
_pdbx_contact_author.name_first Jiro
_pdbx_contact_author.name_last Kondo
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Kondo, J.' 1 ?
'Hirabayashi, K.' 2 ?
'Torigoe, H.' 3 ?
'Adachi, S.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Dalton Trans'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1477-9234
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 54
_citation.language ?
_citation.page_first 7208
_citation.page_last 7213
_citation.title
'Novel specific binding of copper ions to naturally modified base pairs involving 5-fluorouracil in duplex DNA.'
_citation.year 2025
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1039/d5dt00619h
_citation.pdbx_database_id_PubMed 40265694
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Torigoe, H.' 1 0000-0003-4742-6132
primary 'Hirabayashi, K.' 2 ?
primary 'Adachi, S.' 3 ?
primary 'Kondo, J.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*GP*AP*CP*CP*CP*(UFP)P*GP*GP*TP*CP*C)-3')
;
3643.331 1 ? ? ? ?
2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DC)(DC)(DC)(UFP)(DG)(DG)(DT)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGACCCNGGTCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name 'COPPER (II) ION'
_pdbx_entity_nonpoly.comp_id CU
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DA n
1 4 DC n
1 5 DC n
1 6 DC n
1 7 UFP n
1 8 DG n
1 9 DG n
1 10 DT n
1 11 DC n
1 12 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 12
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
UFP 'DNA linking' . "5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 F N2 O8 P' 326.172
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 UFP 7 7 7 UFP UFP A . n
A 1 8 DG 8 8 8 DG DG A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DT 10 10 10 DT DT A . n
A 1 11 DC 11 11 11 DC DC A . n
A 1 12 DC 12 12 12 DC DC A . n
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id UFP
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id UFP
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_pdbx_nonpoly_scheme.asym_id B
_pdbx_nonpoly_scheme.entity_id 2
_pdbx_nonpoly_scheme.mon_id CU
_pdbx_nonpoly_scheme.ndb_seq_num 1
_pdbx_nonpoly_scheme.pdb_seq_num 101
_pdbx_nonpoly_scheme.auth_seq_num 1
_pdbx_nonpoly_scheme.pdb_mon_id CU
_pdbx_nonpoly_scheme.auth_mon_id CU
_pdbx_nonpoly_scheme.pdb_strand_id A
_pdbx_nonpoly_scheme.pdb_ins_code .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 9KCC
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 39.467
_cell.length_a_esd ?
_cell.length_b 39.467
_cell.length_b_esd ?
_cell.length_c 74.577
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 9KCC
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 9KCC
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.99
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 69.14
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'MPD, MOPS, Spermine, Copper chloride'
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp 293
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2019-08-31
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.id ?
_diffrn_detector.number_of_axes ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.37776
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'SLS BEAMLINE X06SA'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.37776
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline X06SA
_diffrn_source.pdbx_synchrotron_site SLS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 9KCC
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.31
_reflns.d_resolution_low 27.96
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 4875
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 91.7
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 13.6
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 7.19
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.042
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.998
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs 0.032
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
2.31 2.45 ? ? ? ? ? ? 751 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.836 ? ? 1 1 0.634 ? ? ? ? 0.611 ? ? ? ? ? ? ? ? ?
2.45 2.62 ? ? ? ? ? ? 699 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.384 ? ? 2 1 0.933 ? ? ? ? 0.283 ? ? ? ? ? ? ? ? ?
2.62 2.82 ? ? ? ? ? ? 658 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.159 ? ? 3 1 0.984 ? ? ? ? 0.12 ? ? ? ? ? ? ? ? ?
2.82 3.09 ? ? ? ? ? ? 607 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.052 ? ? 4 1 0.998 ? ? ? ? 0.04 ? ? ? ? ? ? ? ? ?
3.09 3.46 ? ? ? ? ? ? 556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.038 ? ? 5 1 0.998 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? ?
3.46 3.98 ? ? ? ? ? ? 469 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.04 ? ? 6 1 0.997 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? ?
3.98 4.87 ? ? ? ? ? ? 374 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.036 ? ? 7 1 0.998 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? ?
4.87 6.83 ? ? ? ? ? ? 296 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.045 ? ? 8 1 0.993 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? ?
6.83 27.96 ? ? ? ? ? ? 147 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.034 ? ? 9 1 0.997 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 9KCC
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.31
_refine.ls_d_res_low 27.10
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 4875
_refine.ls_number_reflns_R_free 242
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 98.74
_refine.ls_percent_reflns_R_free 4.96
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1914
_refine.ls_R_factor_R_free 0.2085
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1904
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.37
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model Modeller
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.10
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 30.77
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.16
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 241
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 242
_refine_hist.d_res_high 2.31
_refine_hist.d_res_low 27.10
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.009 ? ? ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.115 ? ? ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 11.312 ? 110 ? f_dihedral_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.048 ? 46 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.006 ? 12 ? f_plane_restr ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 2.31 2.91 . . 117 2319 99.00 . . . . 0.3994 . . . . . . . . . . . 0.4420
'X-RAY DIFFRACTION' 2.91 27.10 . . 125 2314 99.00 . . . . 0.1692 . . . . . . . . . . . 0.1888
#
_struct.entry_id 9KCC
_struct.title 'DNA duplex containing copper-mediated 5-fluorouracil-cytosine base pairs'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 9KCC
_struct_keywords.text 'metal-mediated base pair, copper, 5-fluorouracil, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 9KCC
_struct_ref.pdbx_db_accession 9KCC
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 9KCC
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 12
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 9KCC
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 12
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2690 ?
1 MORE -22 ?
1 'SSA (A^2)' 3990 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 39.4670000000 -1.0000000000
0.0000000000 0.0000000000 39.4670000000 0.0000000000 0.0000000000 -1.0000000000 37.2885000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DC 6 "O3'" ? ? ? 1_555 A UFP 7 P ? ? A DC 6 A UFP 7 1_555 ? ? ? ? ? ? ? 1.600 ? ?
covale2 covale one ? A UFP 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A UFP 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.611 ? ?
metalc1 metalc ? ? A DC 6 N3 ? ? ? 1_555 B CU . CU ? ? A DC 6 A CU 101 1_555 ? ? ? ? ? ? ? 1.987 ? ?
metalc2 metalc ? ? A UFP 7 N3 ? ? ? 1_555 B CU . CU ? ? A UFP 7 A CU 101 8_665 ? ? ? ? ? ? ? 1.792 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 1 A DC 12 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 1 A DC 12 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 1 A DC 12 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 2 A DC 11 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 2 A DC 11 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 2 A DC 11 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 3 A DT 10 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 3 A DT 10 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 4 A DG 9 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 4 A DG 9 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 8 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 8 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 8 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 9 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 9 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 9 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 10 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 10 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 12 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 12 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 12 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id N3
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id A
_pdbx_struct_conn_angle.ptnr1_label_comp_id DC
_pdbx_struct_conn_angle.ptnr1_label_seq_id 6
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id A
_pdbx_struct_conn_angle.ptnr1_auth_comp_id DC
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 6
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 1_555
_pdbx_struct_conn_angle.ptnr2_label_atom_id CU
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id B
_pdbx_struct_conn_angle.ptnr2_label_comp_id CU
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id A
_pdbx_struct_conn_angle.ptnr2_auth_comp_id CU
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 101
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id N3
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id A
_pdbx_struct_conn_angle.ptnr3_label_comp_id UFP
_pdbx_struct_conn_angle.ptnr3_label_seq_id 7
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id A
_pdbx_struct_conn_angle.ptnr3_auth_comp_id UFP
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 7
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 1_555
_pdbx_struct_conn_angle.value 84.2
_pdbx_struct_conn_angle.value_esd ?
#
_pdbx_entry_details.entry_id 9KCC
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.has_protein_modification N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CU CU CU N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
UFP N1 N N N 145
UFP C2 C N N 146
UFP N3 N N N 147
UFP C4 C N N 148
UFP C5 C N N 149
UFP C6 C N N 150
UFP O2 O N N 151
UFP O4 O N N 152
UFP F5 F N N 153
UFP "C1'" C N R 154
UFP "C2'" C N N 155
UFP "C3'" C N S 156
UFP "C4'" C N R 157
UFP "O3'" O N N 158
UFP "O4'" O N N 159
UFP "C5'" C N N 160
UFP "O5'" O N N 161
UFP P P N N 162
UFP O1P O N N 163
UFP O2P O N N 164
UFP O3P O N N 165
UFP HN3 H N N 166
UFP H6 H N N 167
UFP "H1'" H N N 168
UFP "H2'1" H N N 169
UFP "H2'2" H N N 170
UFP "H3'" H N N 171
UFP "H4'" H N N 172
UFP "HO3'" H N N 173
UFP "H5'1" H N N 174
UFP "H5'2" H N N 175
UFP HOP2 H N N 176
UFP HOP3 H N N 177
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
UFP N1 C2 sing N N 150
UFP N1 C6 sing N N 151
UFP N1 "C1'" sing N N 152
UFP C2 N3 sing N N 153
UFP C2 O2 doub N N 154
UFP N3 C4 sing N N 155
UFP N3 HN3 sing N N 156
UFP C4 C5 sing N N 157
UFP C4 O4 doub N N 158
UFP C5 C6 doub N N 159
UFP C5 F5 sing N N 160
UFP C6 H6 sing N N 161
UFP "C1'" "C2'" sing N N 162
UFP "C1'" "O4'" sing N N 163
UFP "C1'" "H1'" sing N N 164
UFP "C2'" "C3'" sing N N 165
UFP "C2'" "H2'1" sing N N 166
UFP "C2'" "H2'2" sing N N 167
UFP "C3'" "C4'" sing N N 168
UFP "C3'" "O3'" sing N N 169
UFP "C3'" "H3'" sing N N 170
UFP "C4'" "O4'" sing N N 171
UFP "C4'" "C5'" sing N N 172
UFP "C4'" "H4'" sing N N 173
UFP "O3'" "HO3'" sing N N 174
UFP "C5'" "O5'" sing N N 175
UFP "C5'" "H5'1" sing N N 176
UFP "C5'" "H5'2" sing N N 177
UFP "O5'" P sing N N 178
UFP P O1P doub N N 179
UFP P O2P sing N N 180
UFP P O3P sing N N 181
UFP O2P HOP2 sing N N 182
UFP O3P HOP3 sing N N 183
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
9KCC 'a-form double helix'
9KCC 'internal loop'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 12 8_665 -0.074 -0.218 -0.081 -9.124 0.597 4.352 1 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 1_555 A DC 11 8_665 -0.200 -0.221 -0.115 -4.864 -4.697 3.615 2 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 1_555 A DT 10 8_665 -0.022 -0.284 0.083 -0.964 -10.332 4.933 3 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 1_555 A DG 9 8_665 0.003 -0.219 -0.035 10.123 -10.239 3.888 4 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 1_555 A DG 8 8_665 0.273 -0.243 -0.323 9.557 -11.968 3.213 5 A_DC5:DG8_A A 5 ? A 8 ? 19 1
1 A DG 1 8_665 A DC 12 1_555 -0.074 -0.218 -0.081 -9.124 0.597 4.352 6 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 8_665 A DC 11 1_555 -0.200 -0.221 -0.115 -4.864 -4.697 3.615 7 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 8_665 A DT 10 1_555 -0.022 -0.284 0.083 -0.964 -10.332 4.933 8 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 8_665 A DG 9 1_555 0.003 -0.219 -0.035 10.123 -10.239 3.888 9 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 8_665 A DG 8 1_555 0.273 -0.243 -0.323 9.557 -11.968 3.213 10 A_DC5:DG8_A A 5 ? A 8 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 12 8_665 A DG 2 1_555 A DC 11 8_665 0.168 -1.596 3.247 2.362 0.966 29.316 -3.347 0.168 3.198 1.904 -4.655
29.424 1 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 1_555 A DC 11 8_665 A DA 3 1_555 A DT 10 8_665 -0.242 -1.243 3.273 0.644 0.281 34.574 -2.134 0.507 3.258 0.473 -1.083
34.581 2 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 1_555 A DT 10 8_665 A DC 4 1_555 A DG 9 8_665 0.251 -1.375 3.089 -0.586 4.440 28.209 -3.709 -0.630 2.838 9.038 1.193
28.555 3 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 1_555 A DG 9 8_665 A DC 5 1_555 A DG 8 8_665 -0.312 -1.892 3.269 0.263 8.092 30.093 -4.955 0.629 2.679 15.242 -0.496
31.138 4 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
1 A DG 1 8_665 A DC 12 1_555 A DG 2 8_665 A DC 11 1_555 0.168 -1.596 3.247 2.362 0.966 29.316 -3.347 0.168 3.198 1.904 -4.655
29.424 5 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 8_665 A DC 11 1_555 A DA 3 8_665 A DT 10 1_555 -0.242 -1.243 3.273 0.644 0.281 34.574 -2.134 0.507 3.258 0.473 -1.083
34.581 6 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 8_665 A DT 10 1_555 A DC 4 8_665 A DG 9 1_555 0.251 -1.375 3.089 -0.586 4.440 28.209 -3.709 -0.630 2.838 9.038 1.193
28.555 7 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 8_665 A DG 9 1_555 A DC 5 8_665 A DG 8 1_555 -0.312 -1.892 3.269 0.263 8.092 30.093 -4.955 0.629 2.679 15.242 -0.496
31.138 8 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
#
_pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)'
_pdbx_audit_support.country Japan
_pdbx_audit_support.grant_number ?
_pdbx_audit_support.ordinal 1
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Modeller
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.details ?
#
_atom_sites.entry_id 9KCC
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 0.025338
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025338
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.013409
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
CU
F
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 5.937 15.316 11.076 1.00 103.11 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 6.640 14.200 11.576 1.00 93.66 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 8.110 14.292 11.219 1.00 92.97 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 8.265 14.289 9.772 1.00 89.66 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 8.811 15.563 11.675 1.00 90.97 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 9.259 15.423 12.995 1.00 98.62 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 9.981 15.616 10.704 1.00 93.57 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 9.296 15.198 9.406 1.00 88.04 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 8.693 16.322 8.696 1.00 83.83 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 7.355 16.618 8.595 1.00 86.12 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 7.116 17.695 7.882 1.00 90.53 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 8.377 18.145 7.506 1.00 82.99 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 8.751 19.272 6.736 1.00 86.06 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 8.017 20.124 6.212 1.00 90.18 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 10.134 19.357 6.576 1.00 84.88 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 11.038 18.471 7.113 1.00 86.29 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 12.335 18.719 6.860 1.00 81.96 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 10.696 17.413 7.852 1.00 82.34 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 9.357 17.314 8.002 1.00 82.16 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 9.420 16.723 13.921 1.00 99.36 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 9.778 16.269 15.283 1.00 100.98 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 8.204 17.542 13.672 1.00 97.79 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 10.677 17.484 13.305 1.00 94.29 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 11.991 17.108 13.673 1.00 91.34 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 12.993 17.681 12.684 1.00 95.15 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 12.408 17.686 11.358 1.00 95.00 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 13.364 19.129 12.920 1.00 95.23 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 14.387 19.215 13.874 1.00 98.09 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 13.847 19.563 11.542 1.00 90.37 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 12.870 18.819 10.629 1.00 91.75 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 11.705 19.619 10.222 1.00 90.15 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 10.391 19.425 10.603 1.00 87.18 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 9.564 20.290 10.078 1.00 86.83 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 10.378 21.117 9.308 1.00 85.00 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 10.038 22.240 8.505 1.00 87.93 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 8.912 22.736 8.316 1.00 88.95 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 11.162 22.793 7.879 1.00 85.35 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 12.452 22.325 8.028 1.00 87.54 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 13.400 22.992 7.356 1.00 85.08 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 12.786 21.269 8.780 1.00 82.78 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 11.700 20.717 9.383 1.00 84.20 ? 2 DG A C4 1
ATOM 42 P P . DA A 1 3 ? 14.507 20.532 14.777 1.00 96.66 ? 3 DA A P 1
ATOM 43 O OP1 . DA A 1 3 ? 15.533 20.264 15.815 1.00 100.78 ? 3 DA A OP1 1
ATOM 44 O OP2 . DA A 1 3 ? 13.114 20.885 15.162 1.00 95.13 ? 3 DA A OP2 1
ATOM 45 O "O5'" . DA A 1 3 ? 15.131 21.618 13.791 1.00 93.01 ? 3 DA A "O5'" 1
ATOM 46 C "C5'" . DA A 1 3 ? 16.422 21.388 13.229 1.00 93.19 ? 3 DA A "C5'" 1
ATOM 47 C "C4'" . DA A 1 3 ? 16.796 22.496 12.265 1.00 95.98 ? 3 DA A "C4'" 1
ATOM 48 O "O4'" . DA A 1 3 ? 15.937 22.438 11.097 1.00 91.89 ? 3 DA A "O4'" 1
ATOM 49 C "C3'" . DA A 1 3 ? 16.589 23.890 12.807 1.00 95.87 ? 3 DA A "C3'" 1
ATOM 50 O "O3'" . DA A 1 3 ? 17.699 24.297 13.570 1.00 99.38 ? 3 DA A "O3'" 1
ATOM 51 C "C2'" . DA A 1 3 ? 16.445 24.700 11.536 1.00 94.11 ? 3 DA A "C2'" 1
ATOM 52 C "C1'" . DA A 1 3 ? 15.588 23.760 10.697 1.00 93.23 ? 3 DA A "C1'" 1
ATOM 53 N N9 . DA A 1 3 ? 14.135 23.950 10.875 1.00 93.58 ? 3 DA A N9 1
ATOM 54 C C8 . DA A 1 3 ? 13.299 23.257 11.718 1.00 89.41 ? 3 DA A C8 1
ATOM 55 N N7 . DA A 1 3 ? 12.039 23.640 11.648 1.00 87.74 ? 3 DA A N7 1
ATOM 56 C C5 . DA A 1 3 ? 12.047 24.657 10.704 1.00 82.19 ? 3 DA A C5 1
ATOM 57 C C6 . DA A 1 3 ? 11.025 25.474 10.181 1.00 82.86 ? 3 DA A C6 1
ATOM 58 N N6 . DA A 1 3 ? 9.750 25.376 10.553 1.00 82.35 ? 3 DA A N6 1
ATOM 59 N N1 . DA A 1 3 ? 11.365 26.391 9.246 1.00 85.13 ? 3 DA A N1 1
ATOM 60 C C2 . DA A 1 3 ? 12.652 26.477 8.867 1.00 86.64 ? 3 DA A C2 1
ATOM 61 N N3 . DA A 1 3 ? 13.703 25.761 9.289 1.00 86.73 ? 3 DA A N3 1
ATOM 62 C C4 . DA A 1 3 ? 13.328 24.860 10.212 1.00 85.51 ? 3 DA A C4 1
ATOM 63 P P . DC A 1 4 ? 17.436 25.178 14.887 1.00 104.48 ? 4 DC A P 1
ATOM 64 O OP1 . DC A 1 4 ? 18.724 25.286 15.617 1.00 109.81 ? 4 DC A OP1 1
ATOM 65 O OP2 . DC A 1 4 ? 16.247 24.608 15.581 1.00 88.04 ? 4 DC A OP2 1
ATOM 66 O "O5'" . DC A 1 4 ? 17.074 26.615 14.276 1.00 92.98 ? 4 DC A "O5'" 1
ATOM 67 C "C5'" . DC A 1 4 ? 18.063 27.309 13.580 1.00 93.67 ? 4 DC A "C5'" 1
ATOM 68 C "C4'" . DC A 1 4 ? 17.460 28.368 12.694 1.00 94.43 ? 4 DC A "C4'" 1
ATOM 69 O "O4'" . DC A 1 4 ? 16.480 27.781 11.801 1.00 94.56 ? 4 DC A "O4'" 1
ATOM 70 C "C3'" . DC A 1 4 ? 16.681 29.443 13.410 1.00 92.30 ? 4 DC A "C3'" 1
ATOM 71 O "O3'" . DC A 1 4 ? 17.563 30.369 13.990 1.00 96.87 ? 4 DC A "O3'" 1
ATOM 72 C "C2'" . DC A 1 4 ? 15.925 30.042 12.228 1.00 89.16 ? 4 DC A "C2'" 1
ATOM 73 C "C1'" . DC A 1 4 ? 15.498 28.767 11.491 1.00 89.07 ? 4 DC A "C1'" 1
ATOM 74 N N1 . DC A 1 4 ? 14.154 28.283 11.932 1.00 85.25 ? 4 DC A N1 1
ATOM 75 C C2 . DC A 1 4 ? 13.021 28.876 11.390 1.00 85.17 ? 4 DC A C2 1
ATOM 76 O O2 . DC A 1 4 ? 13.170 29.766 10.534 1.00 87.41 ? 4 DC A O2 1
ATOM 77 N N3 . DC A 1 4 ? 11.791 28.460 11.805 1.00 82.13 ? 4 DC A N3 1
ATOM 78 C C4 . DC A 1 4 ? 11.684 27.497 12.721 1.00 80.61 ? 4 DC A C4 1
ATOM 79 N N4 . DC A 1 4 ? 10.452 27.120 13.098 1.00 73.92 ? 4 DC A N4 1
ATOM 80 C C5 . DC A 1 4 ? 12.838 26.887 13.305 1.00 83.87 ? 4 DC A C5 1
ATOM 81 C C6 . DC A 1 4 ? 14.043 27.307 12.886 1.00 85.59 ? 4 DC A C6 1
ATOM 82 P P . DC A 1 5 ? 17.101 31.233 15.260 1.00 95.83 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? 18.317 31.921 15.744 1.00 103.17 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? 16.328 30.373 16.186 1.00 96.89 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? 16.097 32.314 14.644 1.00 88.86 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? 16.535 33.161 13.604 1.00 87.80 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? 15.385 33.997 13.085 1.00 87.15 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? 14.484 33.167 12.319 1.00 86.65 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? 14.494 34.598 14.157 1.00 86.37 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? 15.076 35.759 14.653 1.00 88.81 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? 13.253 34.909 13.338 1.00 88.18 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? 13.158 33.654 12.473 1.00 85.14 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? 12.315 32.599 13.100 1.00 81.33 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? 10.936 32.661 12.928 1.00 82.78 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? 10.462 33.583 12.246 1.00 82.01 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? 10.153 31.715 13.514 1.00 81.65 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? 10.707 30.750 14.244 1.00 80.57 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? 9.895 29.840 14.782 1.00 78.12 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? 12.122 30.672 14.444 1.00 79.95 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? 12.881 31.613 13.863 1.00 81.69 ? 5 DC A C6 1
ATOM 101 P P . DC A 1 6 ? 14.674 36.314 16.095 1.00 86.50 ? 6 DC A P 1
ATOM 102 O OP1 . DC A 1 6 ? 15.556 37.473 16.303 1.00 94.32 ? 6 DC A OP1 1
ATOM 103 O OP2 . DC A 1 6 ? 14.609 35.182 17.050 1.00 87.59 ? 6 DC A OP2 1
ATOM 104 O "O5'" . DC A 1 6 ? 13.200 36.878 15.911 1.00 82.75 ? 6 DC A "O5'" 1
ATOM 105 C "C5'" . DC A 1 6 ? 12.974 37.965 15.072 1.00 80.99 ? 6 DC A "C5'" 1
ATOM 106 C "C4'" . DC A 1 6 ? 11.507 38.330 15.095 1.00 84.55 ? 6 DC A "C4'" 1
ATOM 107 O "O4'" . DC A 1 6 ? 10.725 37.278 14.481 1.00 83.24 ? 6 DC A "O4'" 1
ATOM 108 C "C3'" . DC A 1 6 ? 10.920 38.501 16.480 1.00 84.22 ? 6 DC A "C3'" 1
ATOM 109 O "O3'" . DC A 1 6 ? 11.143 39.820 16.891 1.00 86.44 ? 6 DC A "O3'" 1
ATOM 110 C "C2'" . DC A 1 6 ? 9.436 38.250 16.225 1.00 84.75 ? 6 DC A "C2'" 1
ATOM 111 C "C1'" . DC A 1 6 ? 9.464 37.189 15.116 1.00 84.40 ? 6 DC A "C1'" 1
ATOM 112 N N1 . DC A 1 6 ? 9.294 35.810 15.635 1.00 82.54 ? 6 DC A N1 1
ATOM 113 C C2 . DC A 1 6 ? 8.020 35.338 15.893 1.00 83.42 ? 6 DC A C2 1
ATOM 114 O O2 . DC A 1 6 ? 7.058 36.078 15.675 1.00 87.31 ? 6 DC A O2 1
ATOM 115 N N3 . DC A 1 6 ? 7.868 34.081 16.376 1.00 85.45 ? 6 DC A N3 1
ATOM 116 C C4 . DC A 1 6 ? 8.934 33.313 16.592 1.00 84.24 ? 6 DC A C4 1
ATOM 117 N N4 . DC A 1 6 ? 8.735 32.074 17.076 1.00 79.73 ? 6 DC A N4 1
ATOM 118 C C5 . DC A 1 6 ? 10.252 33.781 16.330 1.00 83.57 ? 6 DC A C5 1
ATOM 119 C C6 . DC A 1 6 ? 10.383 35.025 15.859 1.00 84.18 ? 6 DC A C6 1
HETATM 120 N N1 . UFP A 1 7 ? 7.010 37.244 19.598 1.00 87.02 ? 7 UFP A N1 1
HETATM 121 C C2 . UFP A 1 7 ? 6.217 36.125 19.939 1.00 87.97 ? 7 UFP A C2 1
HETATM 122 N N3 . UFP A 1 7 ? 6.849 34.866 19.973 1.00 88.41 ? 7 UFP A N3 1
HETATM 123 C C4 . UFP A 1 7 ? 8.202 34.656 19.689 1.00 86.85 ? 7 UFP A C4 1
HETATM 124 C C5 . UFP A 1 7 ? 8.926 35.873 19.358 1.00 84.50 ? 7 UFP A C5 1
HETATM 125 C C6 . UFP A 1 7 ? 8.355 37.099 19.316 1.00 84.26 ? 7 UFP A C6 1
HETATM 126 O O2 . UFP A 1 7 ? 5.019 36.201 20.207 1.00 89.81 ? 7 UFP A O2 1
HETATM 127 O O4 . UFP A 1 7 ? 8.663 33.515 19.746 1.00 84.64 ? 7 UFP A O4 1
HETATM 128 F F5 . UFP A 1 7 ? 10.222 35.720 19.085 1.00 84.75 ? 7 UFP A F5 1
HETATM 129 C "C1'" . UFP A 1 7 ? 6.305 38.607 19.586 1.00 87.74 ? 7 UFP A "C1'" 1
HETATM 130 C "C2'" . UFP A 1 7 ? 6.363 39.283 20.962 1.00 88.01 ? 7 UFP A "C2'" 1
HETATM 131 C "C3'" . UFP A 1 7 ? 7.713 40.022 20.854 1.00 87.09 ? 7 UFP A "C3'" 1
HETATM 132 C "C4'" . UFP A 1 7 ? 7.550 40.539 19.421 1.00 89.99 ? 7 UFP A "C4'" 1
HETATM 133 O "O3'" . UFP A 1 7 ? 7.671 41.070 21.797 1.00 93.88 ? 7 UFP A "O3'" 1
HETATM 134 O "O4'" . UFP A 1 7 ? 6.974 39.445 18.695 1.00 89.19 ? 7 UFP A "O4'" 1
HETATM 135 C "C5'" . UFP A 1 7 ? 8.914 40.979 18.794 1.00 85.14 ? 7 UFP A "C5'" 1
HETATM 136 O "O5'" . UFP A 1 7 ? 9.844 40.123 19.218 1.00 83.16 ? 7 UFP A "O5'" 1
HETATM 137 P P . UFP A 1 7 ? 11.462 40.161 18.421 1.00 82.98 ? 7 UFP A P 1
HETATM 138 O O1P . UFP A 1 7 ? 11.856 41.605 18.585 1.00 91.47 ? 7 UFP A O1P 1
HETATM 139 O O2P . UFP A 1 7 ? 12.286 39.111 19.124 1.00 81.87 ? 7 UFP A O2P 1
ATOM 140 P P . DG A 1 8 ? 8.412 40.940 23.222 1.00 95.11 ? 8 DG A P 1
ATOM 141 O OP1 . DG A 1 8 ? 8.254 42.267 23.841 1.00 102.32 ? 8 DG A OP1 1
ATOM 142 O OP2 . DG A 1 8 ? 9.789 40.406 23.078 1.00 91.57 ? 8 DG A OP2 1
ATOM 143 O "O5'" . DG A 1 8 ? 7.544 39.856 24.023 1.00 89.95 ? 8 DG A "O5'" 1
ATOM 144 C "C5'" . DG A 1 8 ? 6.220 40.166 24.417 1.00 91.40 ? 8 DG A "C5'" 1
ATOM 145 C "C4'" . DG A 1 8 ? 5.448 38.915 24.802 1.00 89.66 ? 8 DG A "C4'" 1
ATOM 146 O "O4'" . DG A 1 8 ? 5.395 38.003 23.682 1.00 92.40 ? 8 DG A "O4'" 1
ATOM 147 C "C3'" . DG A 1 8 ? 6.051 38.069 25.896 1.00 90.34 ? 8 DG A "C3'" 1
ATOM 148 O "O3'" . DG A 1 8 ? 5.815 38.660 27.166 1.00 97.05 ? 8 DG A "O3'" 1
ATOM 149 C "C2'" . DG A 1 8 ? 5.237 36.796 25.698 1.00 88.84 ? 8 DG A "C2'" 1
ATOM 150 C "C1'" . DG A 1 8 ? 5.256 36.683 24.174 1.00 88.01 ? 8 DG A "C1'" 1
ATOM 151 N N9 . DG A 1 8 ? 6.382 35.888 23.712 1.00 86.25 ? 8 DG A N9 1
ATOM 152 C C8 . DG A 1 8 ? 7.567 36.339 23.183 1.00 85.89 ? 8 DG A C8 1
ATOM 153 N N7 . DG A 1 8 ? 8.407 35.375 22.900 1.00 89.21 ? 8 DG A N7 1
ATOM 154 C C5 . DG A 1 8 ? 7.740 34.216 23.303 1.00 86.04 ? 8 DG A C5 1
ATOM 155 C C6 . DG A 1 8 ? 8.142 32.858 23.254 1.00 82.19 ? 8 DG A C6 1
ATOM 156 O O6 . DG A 1 8 ? 9.209 32.381 22.845 1.00 81.27 ? 8 DG A O6 1
ATOM 157 N N1 . DG A 1 8 ? 7.157 32.015 23.751 1.00 84.11 ? 8 DG A N1 1
ATOM 158 C C2 . DG A 1 8 ? 5.937 32.426 24.239 1.00 85.06 ? 8 DG A C2 1
ATOM 159 N N2 . DG A 1 8 ? 5.114 31.460 24.695 1.00 83.17 ? 8 DG A N2 1
ATOM 160 N N3 . DG A 1 8 ? 5.554 33.687 24.291 1.00 85.15 ? 8 DG A N3 1
ATOM 161 C C4 . DG A 1 8 ? 6.500 34.523 23.808 1.00 85.36 ? 8 DG A C4 1
ATOM 162 P P . DG A 1 9 ? 6.839 38.436 28.388 1.00 100.66 ? 9 DG A P 1
ATOM 163 O OP1 . DG A 1 9 ? 6.300 39.283 29.479 1.00 105.43 ? 9 DG A OP1 1
ATOM 164 O OP2 . DG A 1 9 ? 8.237 38.672 27.958 1.00 96.26 ? 9 DG A OP2 1
ATOM 165 O "O5'" . DG A 1 9 ? 6.653 36.881 28.762 1.00 93.59 ? 9 DG A "O5'" 1
ATOM 166 C "C5'" . DG A 1 9 ? 5.376 36.418 29.198 1.00 92.08 ? 9 DG A "C5'" 1
ATOM 167 C "C4'" . DG A 1 9 ? 5.322 34.904 29.296 1.00 88.78 ? 9 DG A "C4'" 1
ATOM 168 O "O4'" . DG A 1 9 ? 5.596 34.325 28.012 1.00 88.60 ? 9 DG A "O4'" 1
ATOM 169 C "C3'" . DG A 1 9 ? 6.344 34.255 30.215 1.00 91.77 ? 9 DG A "C3'" 1
ATOM 170 O "O3'" . DG A 1 9 ? 5.917 34.344 31.589 1.00 90.41 ? 9 DG A "O3'" 1
ATOM 171 C "C2'" . DG A 1 9 ? 6.300 32.815 29.703 1.00 88.89 ? 9 DG A "C2'" 1
ATOM 172 C "C1'" . DG A 1 9 ? 6.115 33.019 28.185 1.00 87.98 ? 9 DG A "C1'" 1
ATOM 173 N N9 . DG A 1 9 ? 7.370 32.916 27.438 1.00 84.71 ? 9 DG A N9 1
ATOM 174 C C8 . DG A 1 9 ? 8.122 33.951 26.932 1.00 87.05 ? 9 DG A C8 1
ATOM 175 N N7 . DG A 1 9 ? 9.214 33.556 26.327 1.00 87.01 ? 9 DG A N7 1
ATOM 176 C C5 . DG A 1 9 ? 9.191 32.173 26.459 1.00 83.52 ? 9 DG A C5 1
ATOM 177 C C6 . DG A 1 9 ? 10.114 31.202 26.011 1.00 80.25 ? 9 DG A C6 1
ATOM 178 O O6 . DG A 1 9 ? 11.162 31.374 25.398 1.00 79.69 ? 9 DG A O6 1
ATOM 179 N N1 . DG A 1 9 ? 9.718 29.916 26.350 1.00 82.43 ? 9 DG A N1 1
ATOM 180 C C2 . DG A 1 9 ? 8.576 29.604 27.038 1.00 82.57 ? 9 DG A C2 1
ATOM 181 N N2 . DG A 1 9 ? 8.369 28.304 27.264 1.00 85.24 ? 9 DG A N2 1
ATOM 182 N N3 . DG A 1 9 ? 7.696 30.501 27.471 1.00 80.73 ? 9 DG A N3 1
ATOM 183 C C4 . DG A 1 9 ? 8.067 31.763 27.144 1.00 83.51 ? 9 DG A C4 1
ATOM 184 P P . DT A 1 10 ? 6.974 34.187 32.797 1.00 92.90 ? 10 DT A P 1
ATOM 185 O OP1 . DT A 1 10 ? 6.220 34.496 34.030 1.00 98.36 ? 10 DT A OP1 1
ATOM 186 O OP2 . DT A 1 10 ? 8.217 34.939 32.504 1.00 92.34 ? 10 DT A OP2 1
ATOM 187 O "O5'" . DT A 1 10 ? 7.370 32.643 32.790 1.00 83.44 ? 10 DT A "O5'" 1
ATOM 188 C "C5'" . DT A 1 10 ? 6.445 31.667 33.184 1.00 85.07 ? 10 DT A "C5'" 1
ATOM 189 C "C4'" . DT A 1 10 ? 7.026 30.296 32.935 1.00 89.30 ? 10 DT A "C4'" 1
ATOM 190 O "O4'" . DT A 1 10 ? 7.471 30.225 31.570 1.00 91.80 ? 10 DT A "O4'" 1
ATOM 191 C "C3'" . DT A 1 10 ? 8.275 29.990 33.727 1.00 92.77 ? 10 DT A "C3'" 1
ATOM 192 O "O3'" . DT A 1 10 ? 7.932 29.467 34.967 1.00 100.83 ? 10 DT A "O3'" 1
ATOM 193 C "C2'" . DT A 1 10 ? 8.952 28.927 32.872 1.00 93.56 ? 10 DT A "C2'" 1
ATOM 194 C "C1'" . DT A 1 10 ? 8.545 29.314 31.471 1.00 87.71 ? 10 DT A "C1'" 1
ATOM 195 N N1 . DT A 1 10 ? 9.628 29.931 30.680 1.00 86.36 ? 10 DT A N1 1
ATOM 196 C C2 . DT A 1 10 ? 10.488 29.108 30.007 1.00 88.57 ? 10 DT A C2 1
ATOM 197 O O2 . DT A 1 10 ? 10.418 27.894 30.067 1.00 92.83 ? 10 DT A O2 1
ATOM 198 N N3 . DT A 1 10 ? 11.436 29.751 29.253 1.00 85.23 ? 10 DT A N3 1
ATOM 199 C C4 . DT A 1 10 ? 11.603 31.110 29.113 1.00 83.27 ? 10 DT A C4 1
ATOM 200 O O4 . DT A 1 10 ? 12.496 31.588 28.425 1.00 87.32 ? 10 DT A O4 1
ATOM 201 C C5 . DT A 1 10 ? 10.664 31.928 29.842 1.00 86.80 ? 10 DT A C5 1
ATOM 202 C C7 . DT A 1 10 ? 10.758 33.424 29.773 1.00 82.26 ? 10 DT A C7 1
ATOM 203 C C6 . DT A 1 10 ? 9.724 31.305 30.585 1.00 87.77 ? 10 DT A C6 1
ATOM 204 P P . DC A 1 11 ? 9.060 29.315 36.095 1.00 104.08 ? 11 DC A P 1
ATOM 205 O OP1 . DC A 1 11 ? 8.337 28.757 37.262 1.00 90.64 ? 11 DC A OP1 1
ATOM 206 O OP2 . DC A 1 11 ? 9.779 30.614 36.165 1.00 100.18 ? 11 DC A OP2 1
ATOM 207 O "O5'" . DC A 1 11 ? 10.107 28.258 35.479 1.00 96.98 ? 11 DC A "O5'" 1
ATOM 208 C "C5'" . DC A 1 11 ? 9.893 26.866 35.635 1.00 97.71 ? 11 DC A "C5'" 1
ATOM 209 C "C4'" . DC A 1 11 ? 10.978 26.089 34.926 1.00 94.63 ? 11 DC A "C4'" 1
ATOM 210 O "O4'" . DC A 1 11 ? 11.114 26.614 33.604 1.00 92.67 ? 11 DC A "O4'" 1
ATOM 211 C "C3'" . DC A 1 11 ? 12.377 26.239 35.506 1.00 94.39 ? 11 DC A "C3'" 1
ATOM 212 O "O3'" . DC A 1 11 ? 12.583 25.329 36.550 1.00 98.48 ? 11 DC A "O3'" 1
ATOM 213 C "C2'" . DC A 1 11 ? 13.255 25.876 34.315 1.00 97.99 ? 11 DC A "C2'" 1
ATOM 214 C "C1'" . DC A 1 11 ? 12.431 26.368 33.131 1.00 92.39 ? 11 DC A "C1'" 1
ATOM 215 N N1 . DC A 1 11 ? 12.970 27.604 32.537 1.00 84.92 ? 11 DC A N1 1
ATOM 216 C C2 . DC A 1 11 ? 14.001 27.506 31.623 1.00 85.51 ? 11 DC A C2 1
ATOM 217 O O2 . DC A 1 11 ? 14.422 26.385 31.329 1.00 87.60 ? 11 DC A O2 1
ATOM 218 N N3 . DC A 1 11 ? 14.503 28.638 31.066 1.00 87.58 ? 11 DC A N3 1
ATOM 219 C C4 . DC A 1 11 ? 14.012 29.826 31.419 1.00 86.81 ? 11 DC A C4 1
ATOM 220 N N4 . DC A 1 11 ? 14.540 30.913 30.849 1.00 84.57 ? 11 DC A N4 1
ATOM 221 C C5 . DC A 1 11 ? 12.963 29.948 32.379 1.00 87.17 ? 11 DC A C5 1
ATOM 222 C C6 . DC A 1 11 ? 12.483 28.820 32.915 1.00 87.86 ? 11 DC A C6 1
ATOM 223 P P . DC A 1 12 ? 13.855 25.509 37.529 1.00 110.45 ? 12 DC A P 1
ATOM 224 O OP1 . DC A 1 12 ? 13.652 24.550 38.640 1.00 110.30 ? 12 DC A OP1 1
ATOM 225 O OP2 . DC A 1 12 ? 14.048 26.947 37.843 1.00 100.14 ? 12 DC A OP2 1
ATOM 226 O "O5'" . DC A 1 12 ? 15.112 25.065 36.637 1.00 98.08 ? 12 DC A "O5'" 1
ATOM 227 C "C5'" . DC A 1 12 ? 15.296 23.704 36.279 1.00 97.83 ? 12 DC A "C5'" 1
ATOM 228 C "C4'" . DC A 1 12 ? 16.505 23.559 35.377 1.00 95.40 ? 12 DC A "C4'" 1
ATOM 229 O "O4'" . DC A 1 12 ? 16.282 24.302 34.160 1.00 95.25 ? 12 DC A "O4'" 1
ATOM 230 C "C3'" . DC A 1 12 ? 17.782 24.151 35.934 1.00 94.95 ? 12 DC A "C3'" 1
ATOM 231 O "O3'" . DC A 1 12 ? 18.411 23.224 36.812 1.00 106.73 ? 12 DC A "O3'" 1
ATOM 232 C "C2'" . DC A 1 12 ? 18.600 24.365 34.672 1.00 90.29 ? 12 DC A "C2'" 1
ATOM 233 C "C1'" . DC A 1 12 ? 17.524 24.772 33.662 1.00 92.15 ? 12 DC A "C1'" 1
ATOM 234 N N1 . DC A 1 12 ? 17.439 26.251 33.443 1.00 88.49 ? 12 DC A N1 1
ATOM 235 C C2 . DC A 1 12 ? 18.325 26.847 32.556 1.00 87.56 ? 12 DC A C2 1
ATOM 236 O O2 . DC A 1 12 ? 19.148 26.131 31.976 1.00 88.57 ? 12 DC A O2 1
ATOM 237 N N3 . DC A 1 12 ? 18.256 28.190 32.347 1.00 88.67 ? 12 DC A N3 1
ATOM 238 C C4 . DC A 1 12 ? 17.350 28.922 33.003 1.00 87.02 ? 12 DC A C4 1
ATOM 239 N N4 . DC A 1 12 ? 17.320 30.241 32.762 1.00 84.30 ? 12 DC A N4 1
ATOM 240 C C5 . DC A 1 12 ? 16.430 28.329 33.922 1.00 84.69 ? 12 DC A C5 1
ATOM 241 C C6 . DC A 1 12 ? 16.511 27.003 34.113 1.00 87.82 ? 12 DC A C6 1
HETATM 242 CU CU . CU B 2 . ? 5.984 33.652 16.838 0.73 82.37 ? 101 CU A CU 1
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