data_9K8Z
#
_entry.id 9K8Z
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.402
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 9K8Z pdb_00009k8z 10.2210/pdb9k8z/pdb
WWPDB D_1300052983 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
_pdbx_audit_revision_history.part_number
1 'Structure model' 1 0 2025-02-19 ?
2 'Structure model' 1 1 2025-02-26 ?
3 'Structure model' 1 2 2025-03-12 ?
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Structure summary'
2 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' struct
2 3 'Structure model' citation
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_struct.title'
2 3 'Structure model' '_citation.journal_volume'
3 3 'Structure model' '_citation.page_first'
4 3 'Structure model' '_citation.page_last'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 9K8Z
_pdbx_database_status.recvd_initial_deposition_date 2024-10-25
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details .
_pdbx_database_related.db_id 9K7R
_pdbx_database_related.content_type unspecified
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email j.kondo@sophia.ac.jp
_pdbx_contact_author.name_first Jiro
_pdbx_contact_author.name_last Kondo
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Kondo, J.' 1 0000-0002-5682-3685
'Ando, S.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Acta Crystallogr.,Sect.F'
_citation.journal_id_ASTM ACSFEN
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2053-230X
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 81
_citation.language ?
_citation.page_first 95
_citation.page_last 100
_citation.title 'The first report of structural analysis of a nucleic acid using crystals grown in space.'
_citation.year 2025
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1107/S2053230X25000810
_citation.pdbx_database_id_PubMed 39937045
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ando, S.' 1 ?
primary 'Takahashi, M.' 2 ?
primary 'Kondo, J.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3')
;
2981.895 1 ? ? ? ?
2 polymer syn
;DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3')
;
2660.788 1 ? ? ? ?
3 non-polymer syn SPERMINE 202.340 1 ? ? ? ?
4 water nat water 18.015 74 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polyribonucleotide no no GAAGAAGAG GAAGAAGAG A ?
2 polydeoxyribonucleotide no yes '(5CM)(DT)(DC)(DT)(DT)(DC)(DT)(DT)(5CM)' CTCTTCTTC B ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 SPERMINE SPM
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 A n
1 3 A n
1 4 G n
1 5 A n
1 6 A n
1 7 G n
1 8 A n
1 9 G n
2 1 5CM n
2 2 DT n
2 3 DC n
2 4 DT n
2 5 DT n
2 6 DC n
2 7 DT n
2 8 DT n
2 9 5CM n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample 1 9 'synthetic construct' ? 32630 ?
2 1 sample 1 9 'synthetic construct' ? 32630 ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
HOH non-polymer . WATER ? 'H2 O' 18.015
SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 1 G G A . n
A 1 2 A 2 2 2 A A A . n
A 1 3 A 3 3 3 A A A . n
A 1 4 G 4 4 4 G G A . n
A 1 5 A 5 5 5 A A A . n
A 1 6 A 6 6 6 A A A . n
A 1 7 G 7 7 7 G G A . n
A 1 8 A 8 8 8 A A A . n
A 1 9 G 9 9 9 G G A . n
B 2 1 5CM 1 1 1 5CM 5CM B . n
B 2 2 DT 2 2 2 DT DT B . n
B 2 3 DC 3 3 3 DC DC B . n
B 2 4 DT 4 4 4 DT DT B . n
B 2 5 DT 5 5 5 DT DT B . n
B 2 6 DC 6 6 6 DC DC B . n
B 2 7 DT 7 7 7 DT DT B . n
B 2 8 DT 8 8 8 DT DT B . n
B 2 9 5CM 9 9 9 5CM 5CM B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SPM 1 101 83 SPM SPM B .
D 4 HOH 1 101 27 HOH HOH A .
D 4 HOH 2 102 19 HOH HOH A .
D 4 HOH 3 103 68 HOH HOH A .
D 4 HOH 4 104 37 HOH HOH A .
D 4 HOH 5 105 77 HOH HOH A .
D 4 HOH 6 106 71 HOH HOH A .
D 4 HOH 7 107 14 HOH HOH A .
D 4 HOH 8 108 20 HOH HOH A .
D 4 HOH 9 109 48 HOH HOH A .
D 4 HOH 10 110 6 HOH HOH A .
D 4 HOH 11 111 23 HOH HOH A .
D 4 HOH 12 112 54 HOH HOH A .
D 4 HOH 13 113 47 HOH HOH A .
D 4 HOH 14 114 50 HOH HOH A .
D 4 HOH 15 115 7 HOH HOH A .
D 4 HOH 16 116 82 HOH HOH A .
D 4 HOH 17 117 61 HOH HOH A .
D 4 HOH 18 118 1 HOH HOH A .
D 4 HOH 19 119 2 HOH HOH A .
D 4 HOH 20 120 69 HOH HOH A .
D 4 HOH 21 121 80 HOH HOH A .
D 4 HOH 22 122 31 HOH HOH A .
D 4 HOH 23 123 73 HOH HOH A .
D 4 HOH 24 124 30 HOH HOH A .
D 4 HOH 25 125 35 HOH HOH A .
D 4 HOH 26 126 38 HOH HOH A .
D 4 HOH 27 127 65 HOH HOH A .
D 4 HOH 28 128 58 HOH HOH A .
D 4 HOH 29 129 46 HOH HOH A .
D 4 HOH 30 130 75 HOH HOH A .
D 4 HOH 31 131 70 HOH HOH A .
E 4 HOH 1 201 49 HOH HOH B .
E 4 HOH 2 202 28 HOH HOH B .
E 4 HOH 3 203 44 HOH HOH B .
E 4 HOH 4 204 53 HOH HOH B .
E 4 HOH 5 205 32 HOH HOH B .
E 4 HOH 6 206 36 HOH HOH B .
E 4 HOH 7 207 29 HOH HOH B .
E 4 HOH 8 208 59 HOH HOH B .
E 4 HOH 9 209 4 HOH HOH B .
E 4 HOH 10 210 15 HOH HOH B .
E 4 HOH 11 211 8 HOH HOH B .
E 4 HOH 12 212 51 HOH HOH B .
E 4 HOH 13 213 21 HOH HOH B .
E 4 HOH 14 214 13 HOH HOH B .
E 4 HOH 15 215 52 HOH HOH B .
E 4 HOH 16 216 3 HOH HOH B .
E 4 HOH 17 217 10 HOH HOH B .
E 4 HOH 18 218 39 HOH HOH B .
E 4 HOH 19 219 17 HOH HOH B .
E 4 HOH 20 220 18 HOH HOH B .
E 4 HOH 21 221 72 HOH HOH B .
E 4 HOH 22 222 40 HOH HOH B .
E 4 HOH 23 223 74 HOH HOH B .
E 4 HOH 24 224 60 HOH HOH B .
E 4 HOH 25 225 25 HOH HOH B .
E 4 HOH 26 226 42 HOH HOH B .
E 4 HOH 27 227 5 HOH HOH B .
E 4 HOH 28 228 43 HOH HOH B .
E 4 HOH 29 229 41 HOH HOH B .
E 4 HOH 30 230 57 HOH HOH B .
E 4 HOH 31 231 34 HOH HOH B .
E 4 HOH 32 232 12 HOH HOH B .
E 4 HOH 33 233 11 HOH HOH B .
E 4 HOH 34 234 26 HOH HOH B .
E 4 HOH 35 235 56 HOH HOH B .
E 4 HOH 36 236 62 HOH HOH B .
E 4 HOH 37 237 45 HOH HOH B .
E 4 HOH 38 238 55 HOH HOH B .
E 4 HOH 39 239 63 HOH HOH B .
E 4 HOH 40 240 79 HOH HOH B .
E 4 HOH 41 241 66 HOH HOH B .
E 4 HOH 42 242 78 HOH HOH B .
E 4 HOH 43 243 76 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 9K8Z
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 48.656
_cell.length_a_esd ?
_cell.length_b 48.656
_cell.length_b_esd ?
_cell.length_c 45.738
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 9K8Z
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 169
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 61'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 9K8Z
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.77
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 55.59
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method COUNTER-DIFFUSION
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'potassium chloride, MPD, spermine, MES'
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp 293.15
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2024-03-24
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.id ?
_diffrn_detector.number_of_axes ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.98
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.98
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL-17A
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 9K8Z
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.40
_reflns.d_resolution_low 24.33
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 12207
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.9
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 5.5
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 20.74
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.042
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.999
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs 0.038
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
1.43 1.44 ? ? ? ? ? ? 222 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.386 ? ? 1 1 0.93 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? ?
1.44 1.45 ? ? ? ? ? ? 246 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.429 ? ? 2 1 0.915 ? ? ? ? 0.389 ? ? ? ? ? ? ? ? ?
1.45 1.46 ? ? ? ? ? ? 207 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.399 ? ? 3 1 0.91 ? ? ? ? 0.362 ? ? ? ? ? ? ? ? ?
1.46 1.47 ? ? ? ? ? ? 231 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.426 ? ? 4 1 0.904 ? ? ? ? 0.386 ? ? ? ? ? ? ? ? ?
1.47 1.5 ? ? ? ? ? ? 614 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.297 ? ? 5 1 0.946 ? ? ? ? 0.27 ? ? ? ? ? ? ? ? ?
1.50 1.6 ? ? ? ? ? ? 1717 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.22 ? ? 6 1 0.976 ? ? ? ? 0.199 ? ? ? ? ? ? ? ? ?
1.60 2.0 ? ? ? ? ? ? 3991 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.087 ? ? 7 1 0.996 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? ?
2.00 3.0 ? ? ? ? ? ? 2944 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.048 ? ? 8 1 0.999 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? ?
3.00 4.0 ? ? ? ? ? ? 733 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.035 ? ? 9 1 0.999 ? ? ? ? 0.032 ? ? ? ? ? ? ? ? ?
4.00 5.0 ? ? ? ? ? ? 253 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.033 ? ? 10 1 0.998 ? ? ? ? 0.03 ? ? ? ? ? ? ? ? ?
5.00 24.33 ? ? ? ? ? ? 285 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.028 ? ? 11 1 0.999 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 9K8Z
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.40
_refine.ls_d_res_low 24.33
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 12207
_refine.ls_number_reflns_R_free 1236
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.71
_refine.ls_percent_reflns_R_free 10.13
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1862
_refine.ls_R_factor_R_free 0.1957
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1851
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.40
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 4U6M
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.10
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 25.41
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.15
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 1.40
_refine_hist.d_res_low 24.33
_refine_hist.number_atoms_solvent 74
_refine_hist.number_atoms_total 462
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 374
_refine_hist.pdbx_number_atoms_ligand 14
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.006 ? ? ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.037 ? ? ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 10.619 ? 189 ? f_dihedral_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.038 ? 78 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.008 ? 18 ? f_plane_restr ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 1.40 1.45 . . 140 1192 98.00 . . . . 0.2620 . . . . . . . . . . . 0.2587
'X-RAY DIFFRACTION' 1.45 1.52 . . 140 1225 100.00 . . . . 0.2300 . . . . . . . . . . . 0.2622
'X-RAY DIFFRACTION' 1.52 1.60 . . 132 1188 100.00 . . . . 0.2184 . . . . . . . . . . . 0.2474
'X-RAY DIFFRACTION' 1.60 1.70 . . 137 1222 100.00 . . . . 0.2188 . . . . . . . . . . . 0.2284
'X-RAY DIFFRACTION' 1.70 1.83 . . 139 1222 100.00 . . . . 0.2045 . . . . . . . . . . . 0.2255
'X-RAY DIFFRACTION' 1.83 2.02 . . 139 1216 100.00 . . . . 0.2077 . . . . . . . . . . . 0.2441
'X-RAY DIFFRACTION' 2.02 2.31 . . 140 1227 100.00 . . . . 0.2097 . . . . . . . . . . . 0.2101
'X-RAY DIFFRACTION' 2.31 2.91 . . 132 1234 100.00 . . . . 0.2093 . . . . . . . . . . . 0.2077
'X-RAY DIFFRACTION' 2.91 24.33 . . 137 1245 100.00 . . . . 0.1455 . . . . . . . . . . . 0.1538
#
_struct.entry_id 9K8Z
_struct.title
'Crystal structure of DNA/RNA duplex obtained using the counter diffusion method in space (K form)'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 9K8Z
_struct_keywords.text 'counter diffusion method, space, microgravity, RNA-DNA complex'
_struct_keywords.pdbx_keywords RNA/DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 PDB 9K8Z 9K8Z ? 1 ? 1
2 PDB 9K8Z 9K8Z ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 9K8Z A 1 ? 9 ? 9K8Z 1 ? 9 ? 1 9
2 2 9K8Z B 1 ? 9 ? 9K8Z 1 ? 9 ? 1 9
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1700 ?
1 MORE -2 ?
1 'SSA (A^2)' 3490 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DT 2 P ? ? B 5CM 1 B DT 2 1_555 ? ? ? ? ? ? ? 1.609 ? ?
covale2 covale both ? B DT 8 "O3'" ? ? ? 1_555 B 5CM 9 P ? ? B DT 8 B 5CM 9 1_555 ? ? ? ? ? ? ? 1.605 ? ?
hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B 5CM 9 N3 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B 5CM 9 O2 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B 5CM 9 N4 ? ? A G 1 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A 2 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A 2 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 3 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G 4 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A 5 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 6 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 B DC 3 N3 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 B DC 3 O2 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 B DC 3 N4 ? ? A G 7 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 B DT 2 N3 ? ? A A 8 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 B DT 2 O4 ? ? A A 8 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A G 9 B 5CM 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_entry_details.entry_id 9K8Z
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.has_protein_modification N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5CM N1 N N N 1
5CM C2 C N N 2
5CM N3 N N N 3
5CM C4 C N N 4
5CM C5 C N N 5
5CM C5A C N N 6
5CM C6 C N N 7
5CM O2 O N N 8
5CM N4 N N N 9
5CM "C1'" C N R 10
5CM "C2'" C N N 11
5CM "C3'" C N S 12
5CM "C4'" C N R 13
5CM "O4'" O N N 14
5CM "O3'" O N N 15
5CM "C5'" C N N 16
5CM "O5'" O N N 17
5CM P P N N 18
5CM OP1 O N N 19
5CM OP2 O N N 20
5CM OP3 O N N 21
5CM H5A1 H N N 22
5CM H5A2 H N N 23
5CM H5A3 H N N 24
5CM H6 H N N 25
5CM HN41 H N N 26
5CM HN42 H N N 27
5CM "H1'" H N N 28
5CM "H2'" H N N 29
5CM "H2''" H N N 30
5CM "H3'" H N N 31
5CM "H4'" H N N 32
5CM "HO3'" H N N 33
5CM "H5'" H N N 34
5CM "H5''" H N N 35
5CM HOP2 H N N 36
5CM HOP3 H N N 37
A OP3 O N N 38
A P P N N 39
A OP1 O N N 40
A OP2 O N N 41
A "O5'" O N N 42
A "C5'" C N N 43
A "C4'" C N R 44
A "O4'" O N N 45
A "C3'" C N S 46
A "O3'" O N N 47
A "C2'" C N R 48
A "O2'" O N N 49
A "C1'" C N R 50
A N9 N Y N 51
A C8 C Y N 52
A N7 N Y N 53
A C5 C Y N 54
A C6 C Y N 55
A N6 N N N 56
A N1 N Y N 57
A C2 C Y N 58
A N3 N Y N 59
A C4 C Y N 60
A HOP3 H N N 61
A HOP2 H N N 62
A "H5'" H N N 63
A "H5''" H N N 64
A "H4'" H N N 65
A "H3'" H N N 66
A "HO3'" H N N 67
A "H2'" H N N 68
A "HO2'" H N N 69
A "H1'" H N N 70
A H8 H N N 71
A H61 H N N 72
A H62 H N N 73
A H2 H N N 74
DC OP3 O N N 75
DC P P N N 76
DC OP1 O N N 77
DC OP2 O N N 78
DC "O5'" O N N 79
DC "C5'" C N N 80
DC "C4'" C N R 81
DC "O4'" O N N 82
DC "C3'" C N S 83
DC "O3'" O N N 84
DC "C2'" C N N 85
DC "C1'" C N R 86
DC N1 N N N 87
DC C2 C N N 88
DC O2 O N N 89
DC N3 N N N 90
DC C4 C N N 91
DC N4 N N N 92
DC C5 C N N 93
DC C6 C N N 94
DC HOP3 H N N 95
DC HOP2 H N N 96
DC "H5'" H N N 97
DC "H5''" H N N 98
DC "H4'" H N N 99
DC "H3'" H N N 100
DC "HO3'" H N N 101
DC "H2'" H N N 102
DC "H2''" H N N 103
DC "H1'" H N N 104
DC H41 H N N 105
DC H42 H N N 106
DC H5 H N N 107
DC H6 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
G OP3 O N N 145
G P P N N 146
G OP1 O N N 147
G OP2 O N N 148
G "O5'" O N N 149
G "C5'" C N N 150
G "C4'" C N R 151
G "O4'" O N N 152
G "C3'" C N S 153
G "O3'" O N N 154
G "C2'" C N R 155
G "O2'" O N N 156
G "C1'" C N R 157
G N9 N Y N 158
G C8 C Y N 159
G N7 N Y N 160
G C5 C Y N 161
G C6 C N N 162
G O6 O N N 163
G N1 N N N 164
G C2 C N N 165
G N2 N N N 166
G N3 N N N 167
G C4 C Y N 168
G HOP3 H N N 169
G HOP2 H N N 170
G "H5'" H N N 171
G "H5''" H N N 172
G "H4'" H N N 173
G "H3'" H N N 174
G "HO3'" H N N 175
G "H2'" H N N 176
G "HO2'" H N N 177
G "H1'" H N N 178
G H8 H N N 179
G H1 H N N 180
G H21 H N N 181
G H22 H N N 182
HOH O O N N 183
HOH H1 H N N 184
HOH H2 H N N 185
SPM N1 N N N 186
SPM C2 C N N 187
SPM C3 C N N 188
SPM C4 C N N 189
SPM N5 N N N 190
SPM C6 C N N 191
SPM C7 C N N 192
SPM C8 C N N 193
SPM C9 C N N 194
SPM N10 N N N 195
SPM C11 C N N 196
SPM C12 C N N 197
SPM C13 C N N 198
SPM N14 N N N 199
SPM HN11 H N N 200
SPM HN12 H N N 201
SPM H21 H N N 202
SPM H22 H N N 203
SPM H31 H N N 204
SPM H32 H N N 205
SPM H41 H N N 206
SPM H42 H N N 207
SPM HN5 H N N 208
SPM H61 H N N 209
SPM H62 H N N 210
SPM H71 H N N 211
SPM H72 H N N 212
SPM H81 H N N 213
SPM H82 H N N 214
SPM H91 H N N 215
SPM H92 H N N 216
SPM HN0 H N N 217
SPM H111 H N N 218
SPM H112 H N N 219
SPM H121 H N N 220
SPM H122 H N N 221
SPM H131 H N N 222
SPM H132 H N N 223
SPM HN41 H N N 224
SPM HN42 H N N 225
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5CM N1 C2 sing N N 1
5CM N1 C6 sing N N 2
5CM N1 "C1'" sing N N 3
5CM C2 N3 sing N N 4
5CM C2 O2 doub N N 5
5CM N3 C4 doub N N 6
5CM C4 C5 sing N N 7
5CM C4 N4 sing N N 8
5CM C5 C5A sing N N 9
5CM C5 C6 doub N N 10
5CM C5A H5A1 sing N N 11
5CM C5A H5A2 sing N N 12
5CM C5A H5A3 sing N N 13
5CM C6 H6 sing N N 14
5CM N4 HN41 sing N N 15
5CM N4 HN42 sing N N 16
5CM "C1'" "C2'" sing N N 17
5CM "C1'" "O4'" sing N N 18
5CM "C1'" "H1'" sing N N 19
5CM "C2'" "C3'" sing N N 20
5CM "C2'" "H2'" sing N N 21
5CM "C2'" "H2''" sing N N 22
5CM "C3'" "C4'" sing N N 23
5CM "C3'" "O3'" sing N N 24
5CM "C3'" "H3'" sing N N 25
5CM "C4'" "O4'" sing N N 26
5CM "C4'" "C5'" sing N N 27
5CM "C4'" "H4'" sing N N 28
5CM "O3'" "HO3'" sing N N 29
5CM "C5'" "O5'" sing N N 30
5CM "C5'" "H5'" sing N N 31
5CM "C5'" "H5''" sing N N 32
5CM "O5'" P sing N N 33
5CM P OP1 doub N N 34
5CM P OP2 sing N N 35
5CM P OP3 sing N N 36
5CM OP2 HOP2 sing N N 37
5CM OP3 HOP3 sing N N 38
A OP3 P sing N N 39
A OP3 HOP3 sing N N 40
A P OP1 doub N N 41
A P OP2 sing N N 42
A P "O5'" sing N N 43
A OP2 HOP2 sing N N 44
A "O5'" "C5'" sing N N 45
A "C5'" "C4'" sing N N 46
A "C5'" "H5'" sing N N 47
A "C5'" "H5''" sing N N 48
A "C4'" "O4'" sing N N 49
A "C4'" "C3'" sing N N 50
A "C4'" "H4'" sing N N 51
A "O4'" "C1'" sing N N 52
A "C3'" "O3'" sing N N 53
A "C3'" "C2'" sing N N 54
A "C3'" "H3'" sing N N 55
A "O3'" "HO3'" sing N N 56
A "C2'" "O2'" sing N N 57
A "C2'" "C1'" sing N N 58
A "C2'" "H2'" sing N N 59
A "O2'" "HO2'" sing N N 60
A "C1'" N9 sing N N 61
A "C1'" "H1'" sing N N 62
A N9 C8 sing Y N 63
A N9 C4 sing Y N 64
A C8 N7 doub Y N 65
A C8 H8 sing N N 66
A N7 C5 sing Y N 67
A C5 C6 sing Y N 68
A C5 C4 doub Y N 69
A C6 N6 sing N N 70
A C6 N1 doub Y N 71
A N6 H61 sing N N 72
A N6 H62 sing N N 73
A N1 C2 sing Y N 74
A C2 N3 doub Y N 75
A C2 H2 sing N N 76
A N3 C4 sing Y N 77
DC OP3 P sing N N 78
DC OP3 HOP3 sing N N 79
DC P OP1 doub N N 80
DC P OP2 sing N N 81
DC P "O5'" sing N N 82
DC OP2 HOP2 sing N N 83
DC "O5'" "C5'" sing N N 84
DC "C5'" "C4'" sing N N 85
DC "C5'" "H5'" sing N N 86
DC "C5'" "H5''" sing N N 87
DC "C4'" "O4'" sing N N 88
DC "C4'" "C3'" sing N N 89
DC "C4'" "H4'" sing N N 90
DC "O4'" "C1'" sing N N 91
DC "C3'" "O3'" sing N N 92
DC "C3'" "C2'" sing N N 93
DC "C3'" "H3'" sing N N 94
DC "O3'" "HO3'" sing N N 95
DC "C2'" "C1'" sing N N 96
DC "C2'" "H2'" sing N N 97
DC "C2'" "H2''" sing N N 98
DC "C1'" N1 sing N N 99
DC "C1'" "H1'" sing N N 100
DC N1 C2 sing N N 101
DC N1 C6 sing N N 102
DC C2 O2 doub N N 103
DC C2 N3 sing N N 104
DC N3 C4 doub N N 105
DC C4 N4 sing N N 106
DC C4 C5 sing N N 107
DC N4 H41 sing N N 108
DC N4 H42 sing N N 109
DC C5 C6 doub N N 110
DC C5 H5 sing N N 111
DC C6 H6 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
G OP3 P sing N N 150
G OP3 HOP3 sing N N 151
G P OP1 doub N N 152
G P OP2 sing N N 153
G P "O5'" sing N N 154
G OP2 HOP2 sing N N 155
G "O5'" "C5'" sing N N 156
G "C5'" "C4'" sing N N 157
G "C5'" "H5'" sing N N 158
G "C5'" "H5''" sing N N 159
G "C4'" "O4'" sing N N 160
G "C4'" "C3'" sing N N 161
G "C4'" "H4'" sing N N 162
G "O4'" "C1'" sing N N 163
G "C3'" "O3'" sing N N 164
G "C3'" "C2'" sing N N 165
G "C3'" "H3'" sing N N 166
G "O3'" "HO3'" sing N N 167
G "C2'" "O2'" sing N N 168
G "C2'" "C1'" sing N N 169
G "C2'" "H2'" sing N N 170
G "O2'" "HO2'" sing N N 171
G "C1'" N9 sing N N 172
G "C1'" "H1'" sing N N 173
G N9 C8 sing Y N 174
G N9 C4 sing Y N 175
G C8 N7 doub Y N 176
G C8 H8 sing N N 177
G N7 C5 sing Y N 178
G C5 C6 sing N N 179
G C5 C4 doub Y N 180
G C6 O6 doub N N 181
G C6 N1 sing N N 182
G N1 C2 sing N N 183
G N1 H1 sing N N 184
G C2 N2 sing N N 185
G C2 N3 doub N N 186
G N2 H21 sing N N 187
G N2 H22 sing N N 188
G N3 C4 sing N N 189
HOH O H1 sing N N 190
HOH O H2 sing N N 191
SPM N1 C2 sing N N 192
SPM N1 HN11 sing N N 193
SPM N1 HN12 sing N N 194
SPM C2 C3 sing N N 195
SPM C2 H21 sing N N 196
SPM C2 H22 sing N N 197
SPM C3 C4 sing N N 198
SPM C3 H31 sing N N 199
SPM C3 H32 sing N N 200
SPM C4 N5 sing N N 201
SPM C4 H41 sing N N 202
SPM C4 H42 sing N N 203
SPM N5 C6 sing N N 204
SPM N5 HN5 sing N N 205
SPM C6 C7 sing N N 206
SPM C6 H61 sing N N 207
SPM C6 H62 sing N N 208
SPM C7 C8 sing N N 209
SPM C7 H71 sing N N 210
SPM C7 H72 sing N N 211
SPM C8 C9 sing N N 212
SPM C8 H81 sing N N 213
SPM C8 H82 sing N N 214
SPM C9 N10 sing N N 215
SPM C9 H91 sing N N 216
SPM C9 H92 sing N N 217
SPM N10 C11 sing N N 218
SPM N10 HN0 sing N N 219
SPM C11 C12 sing N N 220
SPM C11 H111 sing N N 221
SPM C11 H112 sing N N 222
SPM C12 C13 sing N N 223
SPM C12 H121 sing N N 224
SPM C12 H122 sing N N 225
SPM C13 N14 sing N N 226
SPM C13 H131 sing N N 227
SPM C13 H132 sing N N 228
SPM N14 HN41 sing N N 229
SPM N14 HN42 sing N N 230
#
_ndb_struct_conf_na.entry_id 9K8Z
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A G 1 1_555 B 5CM 9 1_555 -0.323 -0.087 -0.089 -6.674 -12.638 0.242 1 A_G1:5CM9_B A 1 ? B 9 ? 19 1
1 A A 2 1_555 B DT 8 1_555 0.076 -0.099 -0.035 -4.642 -17.122 3.083 2 A_A2:DT8_B A 2 ? B 8 ? 20 1
1 A A 3 1_555 B DT 7 1_555 -0.016 -0.109 0.003 -6.553 -20.524 7.880 3 A_A3:DT7_B A 3 ? B 7 ? 20 1
1 A G 4 1_555 B DC 6 1_555 -0.247 -0.177 -0.257 -13.269 -11.273 -1.941 4 A_G4:DC6_B A 4 ? B 6 ? 19 1
1 A A 5 1_555 B DT 5 1_555 0.182 -0.019 -0.364 -13.976 -7.224 -4.966 5 A_A5:DT5_B A 5 ? B 5 ? 20 1
1 A A 6 1_555 B DT 4 1_555 0.037 -0.256 0.085 -1.326 -6.967 2.319 6 A_A6:DT4_B A 6 ? B 4 ? 20 1
1 A G 7 1_555 B DC 3 1_555 -0.084 0.048 0.034 -2.287 -12.279 3.165 7 A_G7:DC3_B A 7 ? B 3 ? 19 1
1 A A 8 1_555 B DT 2 1_555 0.004 -0.151 -0.103 0.167 -3.721 -0.875 8 A_A8:DT2_B A 8 ? B 2 ? 20 1
1 A G 9 1_555 B 5CM 1 1_555 -0.166 -0.091 0.089 9.140 0.209 -0.668 9 A_G9:5CM1_B A 9 ? B 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A G 1 1_555 B 5CM 9 1_555 A A 2 1_555 B DT 8 1_555 0.462 -1.192 3.261 1.290 1.819 36.202 -2.166 -0.563 3.213 2.924 -2.073
36.268 1 AA_G1A2:DT85CM9_BB A 1 ? B 9 ? A 2 ? B 8 ?
1 A A 2 1_555 B DT 8 1_555 A A 3 1_555 B DT 7 1_555 0.394 -1.131 3.317 0.762 3.908 32.752 -2.653 -0.565 3.173 6.898 -1.345
32.987 2 AA_A2A3:DT7DT8_BB A 2 ? B 8 ? A 3 ? B 7 ?
1 A A 3 1_555 B DT 7 1_555 A G 4 1_555 B DC 6 1_555 -1.321 -1.239 3.360 -2.897 12.448 35.699 -3.484 1.670 2.879 19.549 4.549
37.847 3 AA_A3G4:DC6DT7_BB A 3 ? B 7 ? A 4 ? B 6 ?
1 A G 4 1_555 B DC 6 1_555 A A 5 1_555 B DT 5 1_555 0.834 -1.765 3.399 4.484 13.660 30.196 -5.222 -0.747 2.488 24.548 -8.058
33.371 4 AA_G4A5:DT5DC6_BB A 4 ? B 6 ? A 5 ? B 5 ?
1 A A 5 1_555 B DT 5 1_555 A A 6 1_555 B DT 4 1_555 0.747 -1.642 3.069 -1.094 1.529 24.958 -4.207 -2.023 2.930 3.533 2.528
25.027 5 AA_A5A6:DT4DT5_BB A 5 ? B 5 ? A 6 ? B 4 ?
1 A A 6 1_555 B DT 4 1_555 A G 7 1_555 B DC 3 1_555 0.290 -1.511 3.359 0.414 3.435 31.988 -3.343 -0.449 3.187 6.211 -0.748
32.170 6 AA_A6G7:DC3DT4_BB A 6 ? B 4 ? A 7 ? B 3 ?
1 A G 7 1_555 B DC 3 1_555 A A 8 1_555 B DT 2 1_555 -1.095 -1.394 3.194 -0.126 8.748 35.174 -3.383 1.745 2.783 14.205 0.205
36.212 7 AA_G7A8:DT2DC3_BB A 7 ? B 3 ? A 8 ? B 2 ?
1 A A 8 1_555 B DT 2 1_555 A G 9 1_555 B 5CM 1 1_555 0.683 -1.906 3.078 -0.445 0.665 26.958 -4.246 -1.571 3.020 1.426 0.953
26.970 8 AA_A8G9:5CM1DT2_BB A 8 ? B 2 ? A 9 ? B 1 ?
#
_pdbx_audit_support.funding_organization 'Japan Agency for Medical Research and Development (AMED)'
_pdbx_audit_support.country Japan
_pdbx_audit_support.grant_number JP23ama121014
_pdbx_audit_support.ordinal 1
#
_pdbx_initial_refinement_model.accession_code 4U6M
_pdbx_initial_refinement_model.details ?
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.type 'experimental model'
#
_atom_sites.entry_id 9K8Z
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 0.020552
_atom_sites.fract_transf_matrix[1][2] 0.011866
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023732
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.021864
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . G A 1 1 ? -16.671 -7.545 4.485 1.00 28.61 ? 1 G A "O5'" 1
ATOM 2 C "C5'" . G A 1 1 ? -17.959 -7.059 4.822 1.00 27.40 ? 1 G A "C5'" 1
ATOM 3 C "C4'" . G A 1 1 ? -18.872 -7.073 3.626 1.00 25.85 ? 1 G A "C4'" 1
ATOM 4 O "O4'" . G A 1 1 ? -18.361 -6.180 2.602 1.00 24.80 ? 1 G A "O4'" 1
ATOM 5 C "C3'" . G A 1 1 ? -19.009 -8.403 2.908 1.00 24.91 ? 1 G A "C3'" 1
ATOM 6 O "O3'" . G A 1 1 ? -19.903 -9.288 3.555 1.00 26.43 ? 1 G A "O3'" 1
ATOM 7 C "C2'" . G A 1 1 ? -19.473 -7.979 1.520 1.00 22.95 ? 1 G A "C2'" 1
ATOM 8 O "O2'" . G A 1 1 ? -20.858 -7.661 1.523 1.00 24.23 ? 1 G A "O2'" 1
ATOM 9 C "C1'" . G A 1 1 ? -18.685 -6.685 1.323 1.00 23.74 ? 1 G A "C1'" 1
ATOM 10 N N9 . G A 1 1 ? -17.440 -6.905 0.569 1.00 22.52 ? 1 G A N9 1
ATOM 11 C C8 . G A 1 1 ? -16.152 -6.823 1.034 1.00 20.98 ? 1 G A C8 1
ATOM 12 N N7 . G A 1 1 ? -15.255 -7.064 0.115 1.00 22.57 ? 1 G A N7 1
ATOM 13 C C5 . G A 1 1 ? -16.003 -7.314 -1.034 1.00 20.60 ? 1 G A C5 1
ATOM 14 C C6 . G A 1 1 ? -15.590 -7.637 -2.356 1.00 20.32 ? 1 G A C6 1
ATOM 15 O O6 . G A 1 1 ? -14.445 -7.766 -2.807 1.00 19.90 ? 1 G A O6 1
ATOM 16 N N1 . G A 1 1 ? -16.690 -7.809 -3.198 1.00 18.63 ? 1 G A N1 1
ATOM 17 C C2 . G A 1 1 ? -18.009 -7.691 -2.828 1.00 17.77 ? 1 G A C2 1
ATOM 18 N N2 . G A 1 1 ? -18.927 -7.894 -3.783 1.00 19.84 ? 1 G A N2 1
ATOM 19 N N3 . G A 1 1 ? -18.407 -7.396 -1.602 1.00 20.22 ? 1 G A N3 1
ATOM 20 C C4 . G A 1 1 ? -17.354 -7.218 -0.768 1.00 20.65 ? 1 G A C4 1
ATOM 21 P P . A A 1 2 ? -19.619 -10.866 3.569 1.00 26.29 ? 2 A A P 1
ATOM 22 O OP1 . A A 1 2 ? -20.622 -11.484 4.478 1.00 30.32 ? 2 A A OP1 1
ATOM 23 O OP2 . A A 1 2 ? -18.176 -11.103 3.787 1.00 25.98 ? 2 A A OP2 1
ATOM 24 O "O5'" . A A 1 2 ? -19.954 -11.330 2.085 1.00 23.10 ? 2 A A "O5'" 1
ATOM 25 C "C5'" . A A 1 2 ? -21.280 -11.250 1.599 1.00 22.24 ? 2 A A "C5'" 1
ATOM 26 C "C4'" . A A 1 2 ? -21.312 -11.354 0.101 1.00 22.17 ? 2 A A "C4'" 1
ATOM 27 O "O4'" . A A 1 2 ? -20.422 -10.365 -0.474 1.00 21.88 ? 2 A A "O4'" 1
ATOM 28 C "C3'" . A A 1 2 ? -20.818 -12.660 -0.493 1.00 18.17 ? 2 A A "C3'" 1
ATOM 29 O "O3'" . A A 1 2 ? -21.782 -13.690 -0.422 1.00 21.75 ? 2 A A "O3'" 1
ATOM 30 C "C2'" . A A 1 2 ? -20.489 -12.245 -1.914 1.00 19.73 ? 2 A A "C2'" 1
ATOM 31 O "O2'" . A A 1 2 ? -21.691 -12.056 -2.648 1.00 21.15 ? 2 A A "O2'" 1
ATOM 32 C "C1'" . A A 1 2 ? -19.880 -10.865 -1.678 1.00 19.27 ? 2 A A "C1'" 1
ATOM 33 N N9 . A A 1 2 ? -18.412 -10.899 -1.546 1.00 18.12 ? 2 A A N9 1
ATOM 34 C C8 . A A 1 2 ? -17.652 -10.782 -0.409 1.00 20.11 ? 2 A A C8 1
ATOM 35 N N7 . A A 1 2 ? -16.362 -10.824 -0.620 1.00 18.67 ? 2 A A N7 1
ATOM 36 C C5 . A A 1 2 ? -16.260 -10.975 -2.000 1.00 17.67 ? 2 A A C5 1
ATOM 37 C C6 . A A 1 2 ? -15.156 -11.084 -2.857 1.00 17.03 ? 2 A A C6 1
ATOM 38 N N6 . A A 1 2 ? -13.891 -11.051 -2.445 1.00 18.51 ? 2 A A N6 1
ATOM 39 N N1 . A A 1 2 ? -15.401 -11.223 -4.180 1.00 14.69 ? 2 A A N1 1
ATOM 40 C C2 . A A 1 2 ? -16.667 -11.247 -4.591 1.00 16.90 ? 2 A A C2 1
ATOM 41 N N3 . A A 1 2 ? -17.785 -11.150 -3.880 1.00 16.44 ? 2 A A N3 1
ATOM 42 C C4 . A A 1 2 ? -17.510 -11.015 -2.575 1.00 18.58 ? 2 A A C4 1
ATOM 43 P P . A A 1 3 ? -21.327 -15.226 -0.324 1.00 21.45 ? 3 A A P 1
ATOM 44 O OP1 . A A 1 3 ? -22.571 -16.015 -0.118 1.00 24.27 ? 3 A A OP1 1
ATOM 45 O OP2 . A A 1 3 ? -20.174 -15.336 0.602 1.00 23.47 ? 3 A A OP2 1
ATOM 46 O "O5'" . A A 1 3 ? -20.771 -15.566 -1.779 1.00 19.98 ? 3 A A "O5'" 1
ATOM 47 C "C5'" . A A 1 3 ? -21.613 -15.527 -2.922 1.00 20.99 ? 3 A A "C5'" 1
ATOM 48 C "C4'" . A A 1 3 ? -20.802 -15.543 -4.195 1.00 18.82 ? 3 A A "C4'" 1
ATOM 49 O "O4'" . A A 1 3 ? -19.886 -14.421 -4.210 1.00 19.81 ? 3 A A "O4'" 1
ATOM 50 C "C3'" . A A 1 3 ? -19.903 -16.751 -4.400 1.00 19.44 ? 3 A A "C3'" 1
ATOM 51 O "O3'" . A A 1 3 ? -20.594 -17.871 -4.911 1.00 20.25 ? 3 A A "O3'" 1
ATOM 52 C "C2'" . A A 1 3 ? -18.852 -16.223 -5.361 1.00 18.51 ? 3 A A "C2'" 1
ATOM 53 O "O2'" . A A 1 3 ? -19.363 -16.188 -6.688 1.00 19.69 ? 3 A A "O2'" 1
ATOM 54 C "C1'" . A A 1 3 ? -18.690 -14.789 -4.867 1.00 17.48 ? 3 A A "C1'" 1
ATOM 55 N N9 . A A 1 3 ? -17.578 -14.661 -3.912 1.00 15.93 ? 3 A A N9 1
ATOM 56 C C8 . A A 1 3 ? -17.618 -14.579 -2.545 1.00 17.98 ? 3 A A C8 1
ATOM 57 N N7 . A A 1 3 ? -16.435 -14.476 -1.993 1.00 16.91 ? 3 A A N7 1
ATOM 58 C C5 . A A 1 3 ? -15.549 -14.482 -3.068 1.00 16.87 ? 3 A A C5 1
ATOM 59 C C6 . A A 1 3 ? -14.143 -14.390 -3.163 1.00 15.95 ? 3 A A C6 1
ATOM 60 N N6 . A A 1 3 ? -13.301 -14.262 -2.124 1.00 16.73 ? 3 A A N6 1
ATOM 61 N N1 . A A 1 3 ? -13.604 -14.436 -4.398 1.00 15.07 ? 3 A A N1 1
ATOM 62 C C2 . A A 1 3 ? -14.407 -14.564 -5.458 1.00 16.70 ? 3 A A C2 1
ATOM 63 N N3 . A A 1 3 ? -15.732 -14.652 -5.494 1.00 15.35 ? 3 A A N3 1
ATOM 64 C C4 . A A 1 3 ? -16.249 -14.602 -4.253 1.00 15.96 ? 3 A A C4 1
ATOM 65 P P . G A 1 4 ? -19.934 -19.328 -4.814 1.00 22.47 ? 4 G A P 1
ATOM 66 O OP1 . G A 1 4 ? -20.999 -20.307 -5.163 1.00 26.42 ? 4 G A OP1 1
ATOM 67 O OP2 . G A 1 4 ? -19.236 -19.466 -3.511 1.00 22.84 ? 4 G A OP2 1
ATOM 68 O "O5'" . G A 1 4 ? -18.791 -19.338 -5.928 1.00 21.51 ? 4 G A "O5'" 1
ATOM 69 C "C5'" . G A 1 4 ? -19.072 -19.584 -7.298 1.00 24.57 ? 4 G A "C5'" 1
ATOM 70 C "C4'" . G A 1 4 ? -17.803 -19.849 -8.074 1.00 22.99 ? 4 G A "C4'" 1
ATOM 71 O "O4'" . G A 1 4 ? -16.951 -18.667 -8.048 1.00 19.46 ? 4 G A "O4'" 1
ATOM 72 C "C3'" . G A 1 4 ? -16.906 -20.949 -7.530 1.00 21.74 ? 4 G A "C3'" 1
ATOM 73 O "O3'" . G A 1 4 ? -17.334 -22.259 -7.862 1.00 26.27 ? 4 G A "O3'" 1
ATOM 74 C "C2'" . G A 1 4 ? -15.552 -20.579 -8.112 1.00 21.05 ? 4 G A "C2'" 1
ATOM 75 O "O2'" . G A 1 4 ? -15.506 -20.906 -9.495 1.00 23.13 ? 4 G A "O2'" 1
ATOM 76 C "C1'" . G A 1 4 ? -15.594 -19.058 -7.977 1.00 19.84 ? 4 G A "C1'" 1
ATOM 77 N N9 . G A 1 4 ? -15.076 -18.613 -6.669 1.00 16.98 ? 4 G A N9 1
ATOM 78 C C8 . G A 1 4 ? -15.848 -18.313 -5.574 1.00 17.49 ? 4 G A C8 1
ATOM 79 N N7 . G A 1 4 ? -15.149 -17.952 -4.539 1.00 16.99 ? 4 G A N7 1
ATOM 80 C C5 . G A 1 4 ? -13.830 -18.022 -4.968 1.00 16.85 ? 4 G A C5 1
ATOM 81 C C6 . G A 1 4 ? -12.627 -17.734 -4.269 1.00 15.39 ? 4 G A C6 1
ATOM 82 O O6 . G A 1 4 ? -12.513 -17.355 -3.096 1.00 15.70 ? 4 G A O6 1
ATOM 83 N N1 . G A 1 4 ? -11.495 -17.932 -5.055 1.00 14.34 ? 4 G A N1 1
ATOM 84 C C2 . G A 1 4 ? -11.527 -18.348 -6.365 1.00 16.04 ? 4 G A C2 1
ATOM 85 N N2 . G A 1 4 ? -10.325 -18.481 -6.962 1.00 17.03 ? 4 G A N2 1
ATOM 86 N N3 . G A 1 4 ? -12.644 -18.610 -7.033 1.00 16.84 ? 4 G A N3 1
ATOM 87 C C4 . G A 1 4 ? -13.760 -18.428 -6.281 1.00 16.06 ? 4 G A C4 1
ATOM 88 P P . A A 1 5 ? -17.114 -23.457 -6.811 1.00 29.67 ? 5 A A P 1
ATOM 89 O OP1 . A A 1 5 ? -17.425 -24.711 -7.555 1.00 32.03 ? 5 A A OP1 1
ATOM 90 O OP2 . A A 1 5 ? -17.832 -23.126 -5.555 1.00 30.54 ? 5 A A OP2 1
ATOM 91 O "O5'" . A A 1 5 ? -15.553 -23.408 -6.462 1.00 29.55 ? 5 A A "O5'" 1
ATOM 92 C "C5'" . A A 1 5 ? -14.632 -24.240 -7.149 1.00 29.83 ? 5 A A "C5'" 1
ATOM 93 C "C4'" . A A 1 5 ? -13.186 -24.011 -6.757 1.00 26.83 ? 5 A A "C4'" 1
ATOM 94 O "O4'" . A A 1 5 ? -12.872 -22.595 -6.610 1.00 23.09 ? 5 A A "O4'" 1
ATOM 95 C "C3'" . A A 1 5 ? -12.675 -24.596 -5.451 1.00 27.51 ? 5 A A "C3'" 1
ATOM 96 O "O3'" . A A 1 5 ? -12.564 -26.013 -5.423 1.00 28.80 ? 5 A A "O3'" 1
ATOM 97 C "C2'" . A A 1 5 ? -11.341 -23.876 -5.322 1.00 22.06 ? 5 A A "C2'" 1
ATOM 98 O "O2'" . A A 1 5 ? -10.413 -24.394 -6.265 1.00 23.68 ? 5 A A "O2'" 1
ATOM 99 C "C1'" . A A 1 5 ? -11.740 -22.462 -5.762 1.00 22.81 ? 5 A A "C1'" 1
ATOM 100 N N9 . A A 1 5 ? -12.096 -21.675 -4.571 1.00 19.67 ? 5 A A N9 1
ATOM 101 C C8 . A A 1 5 ? -13.338 -21.420 -4.041 1.00 20.18 ? 5 A A C8 1
ATOM 102 N N7 . A A 1 5 ? -13.287 -20.732 -2.922 1.00 18.89 ? 5 A A N7 1
ATOM 103 C C5 . A A 1 5 ? -11.929 -20.553 -2.681 1.00 18.29 ? 5 A A C5 1
ATOM 104 C C6 . A A 1 5 ? -11.225 -19.903 -1.645 1.00 18.98 ? 5 A A C6 1
ATOM 105 N N6 . A A 1 5 ? -11.807 -19.295 -0.607 1.00 18.97 ? 5 A A N6 1
ATOM 106 N N1 . A A 1 5 ? -9.876 -19.899 -1.706 1.00 17.60 ? 5 A A N1 1
ATOM 107 C C2 . A A 1 5 ? -9.282 -20.515 -2.742 1.00 18.98 ? 5 A A C2 1
ATOM 108 N N3 . A A 1 5 ? -9.837 -21.153 -3.768 1.00 18.75 ? 5 A A N3 1
ATOM 109 C C4 . A A 1 5 ? -11.183 -21.140 -3.680 1.00 19.85 ? 5 A A C4 1
ATOM 110 P P . A A 1 6 ? -12.668 -26.804 -4.017 1.00 32.69 ? 6 A A P 1
ATOM 111 O OP1 . A A 1 6 ? -12.789 -28.254 -4.314 1.00 37.29 ? 6 A A OP1 1
ATOM 112 O OP2 . A A 1 6 ? -13.677 -26.136 -3.159 1.00 33.29 ? 6 A A OP2 1
ATOM 113 O "O5'" . A A 1 6 ? -11.265 -26.564 -3.310 1.00 32.73 ? 6 A A "O5'" 1
ATOM 114 C "C5'" . A A 1 6 ? -10.054 -26.911 -3.956 1.00 29.96 ? 6 A A "C5'" 1
ATOM 115 C "C4'" . A A 1 6 ? -8.879 -26.212 -3.326 1.00 29.76 ? 6 A A "C4'" 1
ATOM 116 O "O4'" . A A 1 6 ? -9.124 -24.784 -3.249 1.00 27.07 ? 6 A A "O4'" 1
ATOM 117 C "C3'" . A A 1 6 ? -8.562 -26.597 -1.894 1.00 28.49 ? 6 A A "C3'" 1
ATOM 118 O "O3'" . A A 1 6 ? -7.877 -27.833 -1.808 1.00 29.25 ? 6 A A "O3'" 1
ATOM 119 C "C2'" . A A 1 6 ? -7.755 -25.398 -1.414 1.00 27.33 ? 6 A A "C2'" 1
ATOM 120 O "O2'" . A A 1 6 ? -6.431 -25.437 -1.928 1.00 28.98 ? 6 A A "O2'" 1
ATOM 121 C "C1'" . A A 1 6 ? -8.496 -24.252 -2.102 1.00 26.74 ? 6 A A "C1'" 1
ATOM 122 N N9 . A A 1 6 ? -9.519 -23.666 -1.218 1.00 24.70 ? 6 A A N9 1
ATOM 123 C C8 . A A 1 6 ? -10.886 -23.812 -1.227 1.00 23.21 ? 6 A A C8 1
ATOM 124 N N7 . A A 1 6 ? -11.491 -23.146 -0.267 1.00 23.16 ? 6 A A N7 1
ATOM 125 C C5 . A A 1 6 ? -10.456 -22.530 0.419 1.00 20.41 ? 6 A A C5 1
ATOM 126 C C6 . A A 1 6 ? -10.423 -21.682 1.538 1.00 19.72 ? 6 A A C6 1
ATOM 127 N N6 . A A 1 6 ? -11.503 -21.277 2.206 1.00 19.76 ? 6 A A N6 1
ATOM 128 N N1 . A A 1 6 ? -9.211 -21.248 1.959 1.00 20.34 ? 6 A A N1 1
ATOM 129 C C2 . A A 1 6 ? -8.118 -21.648 1.289 1.00 20.00 ? 6 A A C2 1
ATOM 130 N N3 . A A 1 6 ? -8.020 -22.439 0.233 1.00 23.12 ? 6 A A N3 1
ATOM 131 C C4 . A A 1 6 ? -9.238 -22.848 -0.157 1.00 19.73 ? 6 A A C4 1
ATOM 132 P P . G A 1 7 ? -8.070 -28.788 -0.529 1.00 35.55 ? 7 G A P 1
ATOM 133 O OP1 . G A 1 7 ? -7.481 -30.112 -0.858 1.00 34.14 ? 7 G A OP1 1
ATOM 134 O OP2 . G A 1 7 ? -9.481 -28.710 -0.078 1.00 32.78 ? 7 G A OP2 1
ATOM 135 O "O5'" . G A 1 7 ? -7.128 -28.117 0.549 1.00 26.91 ? 7 G A "O5'" 1
ATOM 136 C "C5'" . G A 1 7 ? -5.721 -28.090 0.369 1.00 28.62 ? 7 G A "C5'" 1
ATOM 137 C "C4'" . G A 1 7 ? -5.098 -27.017 1.216 1.00 25.55 ? 7 G A "C4'" 1
ATOM 138 O "O4'" . G A 1 7 ? -5.827 -25.783 1.010 1.00 30.42 ? 7 G A "O4'" 1
ATOM 139 C "C3'" . G A 1 7 ? -5.165 -27.244 2.721 1.00 24.96 ? 7 G A "C3'" 1
ATOM 140 O "O3'" . G A 1 7 ? -4.100 -28.043 3.195 1.00 24.37 ? 7 G A "O3'" 1
ATOM 141 C "C2'" . G A 1 7 ? -5.135 -25.832 3.279 1.00 26.38 ? 7 G A "C2'" 1
ATOM 142 O "O2'" . G A 1 7 ? -3.807 -25.328 3.284 1.00 29.20 ? 7 G A "O2'" 1
ATOM 143 C "C1'" . G A 1 7 ? -5.934 -25.075 2.221 1.00 24.32 ? 7 G A "C1'" 1
ATOM 144 N N9 . G A 1 7 ? -7.366 -24.946 2.571 1.00 23.35 ? 7 G A N9 1
ATOM 145 C C8 . G A 1 7 ? -8.459 -25.531 1.977 1.00 25.69 ? 7 G A C8 1
ATOM 146 N N7 . G A 1 7 ? -9.593 -25.178 2.535 1.00 25.42 ? 7 G A N7 1
ATOM 147 C C5 . G A 1 7 ? -9.218 -24.300 3.545 1.00 20.35 ? 7 G A C5 1
ATOM 148 C C6 . G A 1 7 ? -9.990 -23.584 4.506 1.00 23.88 ? 7 G A C6 1
ATOM 149 O O6 . G A 1 7 ? -11.214 -23.560 4.661 1.00 24.57 ? 7 G A O6 1
ATOM 150 N N1 . G A 1 7 ? -9.194 -22.813 5.339 1.00 19.56 ? 7 G A N1 1
ATOM 151 C C2 . G A 1 7 ? -7.824 -22.748 5.283 1.00 23.19 ? 7 G A C2 1
ATOM 152 N N2 . G A 1 7 ? -7.211 -21.958 6.173 1.00 21.62 ? 7 G A N2 1
ATOM 153 N N3 . G A 1 7 ? -7.094 -23.410 4.401 1.00 20.56 ? 7 G A N3 1
ATOM 154 C C4 . G A 1 7 ? -7.850 -24.154 3.577 1.00 24.15 ? 7 G A C4 1
ATOM 155 P P . A A 1 8 ? -4.328 -29.084 4.395 1.00 20.92 ? 8 A A P 1
ATOM 156 O OP1 . A A 1 8 ? -3.154 -30.002 4.355 1.00 24.08 ? 8 A A OP1 1
ATOM 157 O OP2 . A A 1 8 ? -5.681 -29.657 4.318 1.00 21.26 ? 8 A A OP2 1
ATOM 158 O "O5'" . A A 1 8 ? -4.260 -28.204 5.713 1.00 19.66 ? 8 A A "O5'" 1
ATOM 159 C "C5'" . A A 1 8 ? -3.018 -27.904 6.312 1.00 20.99 ? 8 A A "C5'" 1
ATOM 160 C "C4'" . A A 1 8 ? -3.205 -27.145 7.595 1.00 19.36 ? 8 A A "C4'" 1
ATOM 161 O "O4'" . A A 1 8 ? -3.827 -25.857 7.329 1.00 18.50 ? 8 A A "O4'" 1
ATOM 162 C "C3'" . A A 1 8 ? -4.127 -27.769 8.627 1.00 18.56 ? 8 A A "C3'" 1
ATOM 163 O "O3'" . A A 1 8 ? -3.542 -28.846 9.333 1.00 18.88 ? 8 A A "O3'" 1
ATOM 164 C "C2'" . A A 1 8 ? -4.463 -26.567 9.488 1.00 18.59 ? 8 A A "C2'" 1
ATOM 165 O "O2'" . A A 1 8 ? -3.332 -26.190 10.261 1.00 19.73 ? 8 A A "O2'" 1
ATOM 166 C "C1'" . A A 1 8 ? -4.678 -25.513 8.406 1.00 18.54 ? 8 A A "C1'" 1
ATOM 167 N N9 . A A 1 8 ? -6.077 -25.548 7.932 1.00 17.74 ? 8 A A N9 1
ATOM 168 C C8 . A A 1 8 ? -6.578 -26.242 6.860 1.00 18.36 ? 8 A A C8 1
ATOM 169 N N7 . A A 1 8 ? -7.871 -26.123 6.685 1.00 18.67 ? 8 A A N7 1
ATOM 170 C C5 . A A 1 8 ? -8.264 -25.304 7.735 1.00 15.52 ? 8 A A C5 1
ATOM 171 C C6 . A A 1 8 ? -9.530 -24.808 8.112 1.00 16.55 ? 8 A A C6 1
ATOM 172 N N6 . A A 1 8 ? -10.668 -25.071 7.464 1.00 16.75 ? 8 A A N6 1
ATOM 173 N N1 . A A 1 8 ? -9.580 -24.041 9.219 1.00 16.54 ? 8 A A N1 1
ATOM 174 C C2 . A A 1 8 ? -8.452 -23.767 9.874 1.00 16.53 ? 8 A A C2 1
ATOM 175 N N3 . A A 1 8 ? -7.208 -24.173 9.619 1.00 17.43 ? 8 A A N3 1
ATOM 176 C C4 . A A 1 8 ? -7.179 -24.952 8.519 1.00 16.42 ? 8 A A C4 1
ATOM 177 P P . G A 1 9 ? -4.460 -30.050 9.889 1.00 17.75 ? 9 G A P 1
ATOM 178 O OP1 . G A 1 9 ? -3.540 -31.089 10.425 1.00 20.53 ? 9 G A OP1 1
ATOM 179 O OP2 . G A 1 9 ? -5.459 -30.457 8.889 1.00 19.15 ? 9 G A OP2 1
ATOM 180 O "O5'" . G A 1 9 ? -5.275 -29.391 11.093 1.00 18.16 ? 9 G A "O5'" 1
ATOM 181 C "C5'" . G A 1 9 ? -4.615 -28.939 12.267 1.00 19.33 ? 9 G A "C5'" 1
ATOM 182 C "C4'" . G A 1 9 ? -5.506 -28.048 13.104 1.00 19.06 ? 9 G A "C4'" 1
ATOM 183 O "O4'" . G A 1 9 ? -6.037 -26.972 12.283 1.00 17.95 ? 9 G A "O4'" 1
ATOM 184 C "C3'" . G A 1 9 ? -6.748 -28.691 13.695 1.00 17.73 ? 9 G A "C3'" 1
ATOM 185 O "O3'" . G A 1 9 ? -6.484 -29.468 14.851 1.00 18.57 ? 9 G A "O3'" 1
ATOM 186 C "C2'" . G A 1 9 ? -7.644 -27.484 13.950 1.00 18.28 ? 9 G A "C2'" 1
ATOM 187 O "O2'" . G A 1 9 ? -7.241 -26.772 15.111 1.00 19.34 ? 9 G A "O2'" 1
ATOM 188 C "C1'" . G A 1 9 ? -7.342 -26.634 12.717 1.00 17.05 ? 9 G A "C1'" 1
ATOM 189 N N9 . G A 1 9 ? -8.306 -26.975 11.661 1.00 15.99 ? 9 G A N9 1
ATOM 190 C C8 . G A 1 9 ? -8.137 -27.777 10.560 1.00 16.70 ? 9 G A C8 1
ATOM 191 N N7 . G A 1 9 ? -9.225 -27.920 9.853 1.00 16.27 ? 9 G A N7 1
ATOM 192 C C5 . G A 1 9 ? -10.177 -27.180 10.547 1.00 15.50 ? 9 G A C5 1
ATOM 193 C C6 . G A 1 9 ? -11.547 -26.947 10.275 1.00 15.35 ? 9 G A C6 1
ATOM 194 O O6 . G A 1 9 ? -12.223 -27.387 9.341 1.00 16.95 ? 9 G A O6 1
ATOM 195 N N1 . G A 1 9 ? -12.144 -26.144 11.251 1.00 14.53 ? 9 G A N1 1
ATOM 196 C C2 . G A 1 9 ? -11.498 -25.606 12.340 1.00 16.58 ? 9 G A C2 1
ATOM 197 N N2 . G A 1 9 ? -12.229 -24.847 13.174 1.00 17.25 ? 9 G A N2 1
ATOM 198 N N3 . G A 1 9 ? -10.216 -25.808 12.602 1.00 16.58 ? 9 G A N3 1
ATOM 199 C C4 . G A 1 9 ? -9.625 -26.602 11.670 1.00 16.13 ? 9 G A C4 1
HETATM 200 N N1 . 5CM B 2 1 ? -17.065 -24.983 11.979 1.00 18.52 ? 1 5CM B N1 1
HETATM 201 C C2 . 5CM B 2 1 ? -15.652 -25.092 12.026 1.00 18.07 ? 1 5CM B C2 1
HETATM 202 N N3 . 5CM B 2 1 ? -15.004 -25.791 11.010 1.00 17.24 ? 1 5CM B N3 1
HETATM 203 C C4 . 5CM B 2 1 ? -15.774 -26.318 10.061 1.00 18.31 ? 1 5CM B C4 1
HETATM 204 C C5 . 5CM B 2 1 ? -17.174 -26.238 9.965 1.00 19.79 ? 1 5CM B C5 1
HETATM 205 C C5A . 5CM B 2 1 ? -17.893 -26.877 8.843 1.00 23.68 ? 1 5CM B C5A 1
HETATM 206 C C6 . 5CM B 2 1 ? -17.824 -25.551 10.966 1.00 19.21 ? 1 5CM B C6 1
HETATM 207 O O2 . 5CM B 2 1 ? -15.003 -24.583 12.939 1.00 17.76 ? 1 5CM B O2 1
HETATM 208 N N4 . 5CM B 2 1 ? -15.056 -27.009 9.072 1.00 20.40 ? 1 5CM B N4 1
HETATM 209 C "C1'" . 5CM B 2 1 ? -17.772 -24.239 13.081 1.00 19.64 ? 1 5CM B "C1'" 1
HETATM 210 C "C2'" . 5CM B 2 1 ? -17.462 -22.741 12.921 1.00 19.29 ? 1 5CM B "C2'" 1
HETATM 211 C "C3'" . 5CM B 2 1 ? -18.691 -22.237 12.198 1.00 20.34 ? 1 5CM B "C3'" 1
HETATM 212 C "C4'" . 5CM B 2 1 ? -19.786 -23.201 12.724 1.00 20.12 ? 1 5CM B "C4'" 1
HETATM 213 O "O4'" . 5CM B 2 1 ? -19.146 -24.443 12.969 1.00 21.26 ? 1 5CM B "O4'" 1
HETATM 214 O "O3'" . 5CM B 2 1 ? -18.893 -20.913 12.544 1.00 21.44 ? 1 5CM B "O3'" 1
HETATM 215 C "C5'" . 5CM B 2 1 ? -20.829 -23.394 11.596 1.00 23.86 ? 1 5CM B "C5'" 1
HETATM 216 O "O5'" . 5CM B 2 1 ? -21.770 -24.216 12.145 1.00 29.10 ? 1 5CM B "O5'" 1
ATOM 217 P P . DT B 2 2 ? -18.160 -19.726 11.742 1.00 21.23 ? 2 DT B P 1
ATOM 218 O OP1 . DT B 2 2 ? -18.805 -18.475 12.224 1.00 24.62 ? 2 DT B OP1 1
ATOM 219 O OP2 . DT B 2 2 ? -18.153 -20.047 10.293 1.00 22.20 ? 2 DT B OP2 1
ATOM 220 O "O5'" . DT B 2 2 ? -16.639 -19.768 12.229 1.00 20.19 ? 2 DT B "O5'" 1
ATOM 221 C "C5'" . DT B 2 2 ? -16.290 -19.403 13.556 1.00 19.86 ? 2 DT B "C5'" 1
ATOM 222 C "C4'" . DT B 2 2 ? -14.795 -19.554 13.768 1.00 18.06 ? 2 DT B "C4'" 1
ATOM 223 O "O4'" . DT B 2 2 ? -14.420 -20.950 13.643 1.00 19.18 ? 2 DT B "O4'" 1
ATOM 224 C "C3'" . DT B 2 2 ? -13.925 -18.867 12.727 1.00 20.29 ? 2 DT B "C3'" 1
ATOM 225 O "O3'" . DT B 2 2 ? -13.795 -17.495 13.011 1.00 22.67 ? 2 DT B "O3'" 1
ATOM 226 C "C2'" . DT B 2 2 ? -12.612 -19.595 12.923 1.00 20.24 ? 2 DT B "C2'" 1
ATOM 227 C "C1'" . DT B 2 2 ? -13.103 -21.023 13.097 1.00 18.47 ? 2 DT B "C1'" 1
ATOM 228 N N1 . DT B 2 2 ? -13.126 -21.808 11.824 1.00 17.75 ? 2 DT B N1 1
ATOM 229 C C2 . DT B 2 2 ? -11.945 -22.339 11.375 1.00 16.65 ? 2 DT B C2 1
ATOM 230 O O2 . DT B 2 2 ? -10.890 -22.192 11.964 1.00 17.58 ? 2 DT B O2 1
ATOM 231 N N3 . DT B 2 2 ? -12.037 -23.048 10.213 1.00 17.21 ? 2 DT B N3 1
ATOM 232 C C4 . DT B 2 2 ? -13.169 -23.276 9.465 1.00 16.80 ? 2 DT B C4 1
ATOM 233 O O4 . DT B 2 2 ? -13.146 -23.959 8.443 1.00 17.13 ? 2 DT B O4 1
ATOM 234 C C5 . DT B 2 2 ? -14.387 -22.684 9.984 1.00 16.57 ? 2 DT B C5 1
ATOM 235 C C7 . DT B 2 2 ? -15.687 -22.856 9.252 1.00 18.42 ? 2 DT B C7 1
ATOM 236 C C6 . DT B 2 2 ? -14.305 -21.983 11.129 1.00 19.14 ? 2 DT B C6 1
ATOM 237 P P . DC B 2 3 ? -13.684 -16.441 11.797 1.00 22.88 ? 3 DC B P 1
ATOM 238 O OP1 . DC B 2 3 ? -13.829 -15.086 12.385 1.00 29.39 ? 3 DC B OP1 1
ATOM 239 O OP2 . DC B 2 3 ? -14.614 -16.888 10.748 1.00 24.16 ? 3 DC B OP2 1
ATOM 240 O "O5'" . DC B 2 3 ? -12.188 -16.619 11.259 1.00 25.06 ? 3 DC B "O5'" 1
ATOM 241 C "C5'" . DC B 2 3 ? -11.081 -16.379 12.120 1.00 25.23 ? 3 DC B "C5'" 1
ATOM 242 C "C4'" . DC B 2 3 ? -9.835 -17.084 11.610 1.00 27.00 ? 3 DC B "C4'" 1
ATOM 243 O "O4'" . DC B 2 3 ? -10.100 -18.499 11.453 1.00 26.91 ? 3 DC B "O4'" 1
ATOM 244 C "C3'" . DC B 2 3 ? -9.359 -16.649 10.235 1.00 26.18 ? 3 DC B "C3'" 1
ATOM 245 O "O3'" . DC B 2 3 ? -8.593 -15.452 10.337 1.00 28.40 ? 3 DC B "O3'" 1
ATOM 246 C "C2'" . DC B 2 3 ? -8.496 -17.841 9.830 1.00 26.95 ? 3 DC B "C2'" 1
ATOM 247 C "C1'" . DC B 2 3 ? -9.297 -19.019 10.396 1.00 23.89 ? 3 DC B "C1'" 1
ATOM 248 N N1 . DC B 2 3 ? -10.179 -19.670 9.379 1.00 22.28 ? 3 DC B N1 1
ATOM 249 C C2 . DC B 2 3 ? -9.621 -20.526 8.417 1.00 21.15 ? 3 DC B C2 1
ATOM 250 O O2 . DC B 2 3 ? -8.401 -20.736 8.428 1.00 25.88 ? 3 DC B O2 1
ATOM 251 N N3 . DC B 2 3 ? -10.428 -21.096 7.497 1.00 21.68 ? 3 DC B N3 1
ATOM 252 C C4 . DC B 2 3 ? -11.737 -20.840 7.504 1.00 20.31 ? 3 DC B C4 1
ATOM 253 N N4 . DC B 2 3 ? -12.488 -21.433 6.579 1.00 21.56 ? 3 DC B N4 1
ATOM 254 C C5 . DC B 2 3 ? -12.330 -19.974 8.473 1.00 22.42 ? 3 DC B C5 1
ATOM 255 C C6 . DC B 2 3 ? -11.523 -19.412 9.378 1.00 22.36 ? 3 DC B C6 1
ATOM 256 P P . DT B 2 4 ? -8.344 -14.529 9.039 1.00 26.77 ? 4 DT B P 1
ATOM 257 O OP1 . DT B 2 4 ? -7.548 -13.371 9.499 1.00 29.70 ? 4 DT B OP1 1
ATOM 258 O OP2 . DT B 2 4 ? -9.637 -14.304 8.353 1.00 28.13 ? 4 DT B OP2 1
ATOM 259 O "O5'" . DT B 2 4 ? -7.439 -15.435 8.082 1.00 25.80 ? 4 DT B "O5'" 1
ATOM 260 C "C5'" . DT B 2 4 ? -6.072 -15.662 8.389 1.00 22.41 ? 4 DT B "C5'" 1
ATOM 261 C "C4'" . DT B 2 4 ? -5.388 -16.421 7.263 1.00 23.24 ? 4 DT B "C4'" 1
ATOM 262 O "O4'" . DT B 2 4 ? -5.930 -17.763 7.166 1.00 23.10 ? 4 DT B "O4'" 1
ATOM 263 C "C3'" . DT B 2 4 ? -5.608 -15.847 5.881 1.00 23.05 ? 4 DT B "C3'" 1
ATOM 264 O "O3'" . DT B 2 4 ? -4.725 -14.780 5.650 1.00 21.78 ? 4 DT B "O3'" 1
ATOM 265 C "C2'" . DT B 2 4 ? -5.274 -17.046 5.012 1.00 20.38 ? 4 DT B "C2'" 1
ATOM 266 C "C1'" . DT B 2 4 ? -5.919 -18.176 5.807 1.00 22.70 ? 4 DT B "C1'" 1
ATOM 267 N N1 . DT B 2 4 ? -7.321 -18.475 5.375 1.00 22.04 ? 4 DT B N1 1
ATOM 268 C C2 . DT B 2 4 ? -7.520 -19.343 4.330 1.00 20.51 ? 4 DT B C2 1
ATOM 269 O O2 . DT B 2 4 ? -6.606 -19.877 3.720 1.00 23.34 ? 4 DT B O2 1
ATOM 270 N N3 . DT B 2 4 ? -8.830 -19.555 4.002 1.00 22.04 ? 4 DT B N3 1
ATOM 271 C C4 . DT B 2 4 ? -9.940 -19.001 4.608 1.00 21.71 ? 4 DT B C4 1
ATOM 272 O O4 . DT B 2 4 ? -11.080 -19.263 4.243 1.00 23.76 ? 4 DT B O4 1
ATOM 273 C C5 . DT B 2 4 ? -9.664 -18.093 5.697 1.00 21.48 ? 4 DT B C5 1
ATOM 274 C C7 . DT B 2 4 ? -10.792 -17.427 6.430 1.00 25.05 ? 4 DT B C7 1
ATOM 275 C C6 . DT B 2 4 ? -8.381 -17.878 6.028 1.00 22.60 ? 4 DT B C6 1
ATOM 276 P P . DT B 2 5 ? -5.053 -13.710 4.501 1.00 20.76 ? 5 DT B P 1
ATOM 277 O OP1 . DT B 2 5 ? -4.065 -12.621 4.656 1.00 22.68 ? 5 DT B OP1 1
ATOM 278 O OP2 . DT B 2 5 ? -6.495 -13.410 4.551 1.00 19.90 ? 5 DT B OP2 1
ATOM 279 O "O5'" . DT B 2 5 ? -4.756 -14.500 3.153 1.00 19.22 ? 5 DT B "O5'" 1
ATOM 280 C "C5'" . DT B 2 5 ? -3.418 -14.807 2.809 1.00 19.75 ? 5 DT B "C5'" 1
ATOM 281 C "C4'" . DT B 2 5 ? -3.370 -15.785 1.658 1.00 18.44 ? 5 DT B "C4'" 1
ATOM 282 O "O4'" . DT B 2 5 ? -4.151 -16.964 1.983 1.00 19.25 ? 5 DT B "O4'" 1
ATOM 283 C "C3'" . DT B 2 5 ? -3.983 -15.295 0.368 1.00 18.57 ? 5 DT B "C3'" 1
ATOM 284 O "O3'" . DT B 2 5 ? -3.075 -14.461 -0.336 1.00 18.99 ? 5 DT B "O3'" 1
ATOM 285 C "C2'" . DT B 2 5 ? -4.200 -16.610 -0.358 1.00 17.74 ? 5 DT B "C2'" 1
ATOM 286 C "C1'" . DT B 2 5 ? -4.688 -17.498 0.782 1.00 18.13 ? 5 DT B "C1'" 1
ATOM 287 N N1 . DT B 2 5 ? -6.180 -17.558 0.884 1.00 17.12 ? 5 DT B N1 1
ATOM 288 C C2 . DT B 2 5 ? -6.848 -18.461 0.098 1.00 18.24 ? 5 DT B C2 1
ATOM 289 O O2 . DT B 2 5 ? -6.283 -19.206 -0.681 1.00 19.31 ? 5 DT B O2 1
ATOM 290 N N3 . DT B 2 5 ? -8.209 -18.465 0.248 1.00 17.67 ? 5 DT B N3 1
ATOM 291 C C4 . DT B 2 5 ? -8.950 -17.669 1.088 1.00 18.03 ? 5 DT B C4 1
ATOM 292 O O4 . DT B 2 5 ? -10.173 -17.758 1.160 1.00 18.37 ? 5 DT B O4 1
ATOM 293 C C5 . DT B 2 5 ? -8.191 -16.734 1.889 1.00 17.17 ? 5 DT B C5 1
ATOM 294 C C7 . DT B 2 5 ? -8.898 -15.817 2.841 1.00 19.35 ? 5 DT B C7 1
ATOM 295 C C6 . DT B 2 5 ? -6.854 -16.720 1.750 1.00 18.07 ? 5 DT B C6 1
ATOM 296 P P . DC B 2 6 ? -3.621 -13.418 -1.427 1.00 18.87 ? 6 DC B P 1
ATOM 297 O OP1 . DC B 2 6 ? -2.493 -12.516 -1.749 1.00 21.31 ? 6 DC B OP1 1
ATOM 298 O OP2 . DC B 2 6 ? -4.904 -12.849 -0.938 1.00 20.90 ? 6 DC B OP2 1
ATOM 299 O "O5'" . DC B 2 6 ? -3.981 -14.309 -2.701 1.00 19.58 ? 6 DC B "O5'" 1
ATOM 300 C "C5'" . DC B 2 6 ? -2.952 -14.873 -3.502 1.00 18.40 ? 6 DC B "C5'" 1
ATOM 301 C "C4'" . DC B 2 6 ? -3.545 -15.711 -4.620 1.00 17.54 ? 6 DC B "C4'" 1
ATOM 302 O "O4'" . DC B 2 6 ? -4.338 -16.783 -4.049 1.00 17.70 ? 6 DC B "O4'" 1
ATOM 303 C "C3'" . DC B 2 6 ? -4.516 -14.971 -5.520 1.00 18.48 ? 6 DC B "C3'" 1
ATOM 304 O "O3'" . DC B 2 6 ? -3.815 -14.271 -6.531 1.00 18.62 ? 6 DC B "O3'" 1
ATOM 305 C "C2'" . DC B 2 6 ? -5.335 -16.117 -6.101 1.00 17.48 ? 6 DC B "C2'" 1
ATOM 306 C "C1'" . DC B 2 6 ? -5.465 -17.034 -4.884 1.00 16.76 ? 6 DC B "C1'" 1
ATOM 307 N N1 . DC B 2 6 ? -6.715 -16.810 -4.090 1.00 16.41 ? 6 DC B N1 1
ATOM 308 C C2 . DC B 2 6 ? -7.912 -17.376 -4.535 1.00 16.55 ? 6 DC B C2 1
ATOM 309 O O2 . DC B 2 6 ? -7.909 -18.045 -5.578 1.00 17.25 ? 6 DC B O2 1
ATOM 310 N N3 . DC B 2 6 ? -9.042 -17.188 -3.804 1.00 15.59 ? 6 DC B N3 1
ATOM 311 C C4 . DC B 2 6 ? -9.010 -16.460 -2.684 1.00 15.69 ? 6 DC B C4 1
ATOM 312 N N4 . DC B 2 6 ? -10.154 -16.308 -2.003 1.00 16.57 ? 6 DC B N4 1
ATOM 313 C C5 . DC B 2 6 ? -7.799 -15.868 -2.211 1.00 16.71 ? 6 DC B C5 1
ATOM 314 C C6 . DC B 2 6 ? -6.686 -16.062 -2.946 1.00 16.09 ? 6 DC B C6 1
ATOM 315 P P . DT B 2 7 ? -4.292 -12.805 -6.988 1.00 20.26 ? 7 DT B P 1
ATOM 316 O OP1 . DT B 2 7 ? -3.330 -12.332 -8.014 1.00 22.41 ? 7 DT B OP1 1
ATOM 317 O OP2 . DT B 2 7 ? -4.545 -11.992 -5.792 1.00 22.01 ? 7 DT B OP2 1
ATOM 318 O "O5'" . DT B 2 7 ? -5.687 -13.058 -7.713 1.00 18.87 ? 7 DT B "O5'" 1
ATOM 319 C "C5'" . DT B 2 7 ? -5.714 -13.685 -8.994 1.00 19.99 ? 7 DT B "C5'" 1
ATOM 320 C "C4'" . DT B 2 7 ? -7.117 -14.139 -9.335 1.00 17.17 ? 7 DT B "C4'" 1
ATOM 321 O "O4'" . DT B 2 7 ? -7.619 -14.970 -8.268 1.00 18.05 ? 7 DT B "O4'" 1
ATOM 322 C "C3'" . DT B 2 7 ? -8.151 -13.030 -9.470 1.00 17.84 ? 7 DT B "C3'" 1
ATOM 323 O "O3'" . DT B 2 7 ? -8.094 -12.473 -10.781 1.00 18.44 ? 7 DT B "O3'" 1
ATOM 324 C "C2'" . DT B 2 7 ? -9.444 -13.809 -9.259 1.00 18.09 ? 7 DT B "C2'" 1
ATOM 325 C "C1'" . DT B 2 7 ? -9.027 -14.816 -8.183 1.00 16.84 ? 7 DT B "C1'" 1
ATOM 326 N N1 . DT B 2 7 ? -9.394 -14.387 -6.810 1.00 17.71 ? 7 DT B N1 1
ATOM 327 C C2 . DT B 2 7 ? -10.671 -14.623 -6.382 1.00 16.22 ? 7 DT B C2 1
ATOM 328 O O2 . DT B 2 7 ? -11.513 -15.146 -7.083 1.00 16.50 ? 7 DT B O2 1
ATOM 329 N N3 . DT B 2 7 ? -10.939 -14.210 -5.107 1.00 16.07 ? 7 DT B N3 1
ATOM 330 C C4 . DT B 2 7 ? -10.072 -13.590 -4.229 1.00 15.39 ? 7 DT B C4 1
ATOM 331 O O4 . DT B 2 7 ? -10.417 -13.250 -3.097 1.00 15.68 ? 7 DT B O4 1
ATOM 332 C C5 . DT B 2 7 ? -8.737 -13.364 -4.737 1.00 15.78 ? 7 DT B C5 1
ATOM 333 C C7 . DT B 2 7 ? -7.704 -12.700 -3.868 1.00 18.61 ? 7 DT B C7 1
ATOM 334 C C6 . DT B 2 7 ? -8.459 -13.776 -5.990 1.00 17.70 ? 7 DT B C6 1
ATOM 335 P P . DT B 2 8 ? -8.549 -10.953 -11.059 1.00 19.77 ? 8 DT B P 1
ATOM 336 O OP1 . DT B 2 8 ? -8.059 -10.660 -12.421 1.00 22.51 ? 8 DT B OP1 1
ATOM 337 O OP2 . DT B 2 8 ? -8.147 -10.082 -9.939 1.00 20.89 ? 8 DT B OP2 1
ATOM 338 O "O5'" . DT B 2 8 ? -10.145 -11.006 -11.103 1.00 17.91 ? 8 DT B "O5'" 1
ATOM 339 C "C5'" . DT B 2 8 ? -10.817 -11.701 -12.151 1.00 17.90 ? 8 DT B "C5'" 1
ATOM 340 C "C4'" . DT B 2 8 ? -12.264 -11.963 -11.768 1.00 15.56 ? 8 DT B "C4'" 1
ATOM 341 O "O4'" . DT B 2 8 ? -12.303 -12.709 -10.535 1.00 16.45 ? 8 DT B "O4'" 1
ATOM 342 C "C3'" . DT B 2 8 ? -13.103 -10.726 -11.496 1.00 16.94 ? 8 DT B "C3'" 1
ATOM 343 O "O3'" . DT B 2 8 ? -13.635 -10.252 -12.717 1.00 17.11 ? 8 DT B "O3'" 1
ATOM 344 C "C2'" . DT B 2 8 ? -14.197 -11.293 -10.613 1.00 16.08 ? 8 DT B "C2'" 1
ATOM 345 C "C1'" . DT B 2 8 ? -13.434 -12.314 -9.791 1.00 14.96 ? 8 DT B "C1'" 1
ATOM 346 N N1 . DT B 2 8 ? -13.006 -11.823 -8.452 1.00 14.28 ? 8 DT B N1 1
ATOM 347 C C2 . DT B 2 8 ? -13.927 -11.850 -7.452 1.00 15.35 ? 8 DT B C2 1
ATOM 348 O O2 . DT B 2 8 ? -15.073 -12.209 -7.627 1.00 15.96 ? 8 DT B O2 1
ATOM 349 N N3 . DT B 2 8 ? -13.472 -11.438 -6.237 1.00 15.47 ? 8 DT B N3 1
ATOM 350 C C4 . DT B 2 8 ? -12.203 -11.004 -5.928 1.00 16.62 ? 8 DT B C4 1
ATOM 351 O O4 . DT B 2 8 ? -11.890 -10.660 -4.792 1.00 16.04 ? 8 DT B O4 1
ATOM 352 C C5 . DT B 2 8 ? -11.267 -10.994 -7.023 1.00 15.66 ? 8 DT B C5 1
ATOM 353 C C7 . DT B 2 8 ? -9.852 -10.537 -6.797 1.00 19.19 ? 8 DT B C7 1
ATOM 354 C C6 . DT B 2 8 ? -11.706 -11.406 -8.230 1.00 18.17 ? 8 DT B C6 1
HETATM 355 N N1 . 5CM B 2 9 ? -16.751 -8.789 -8.192 1.00 15.91 ? 9 5CM B N1 1
HETATM 356 C C2 . 5CM B 2 9 ? -17.010 -8.680 -6.810 1.00 15.46 ? 9 5CM B C2 1
HETATM 357 N N3 . 5CM B 2 9 ? -15.952 -8.354 -5.961 1.00 16.40 ? 9 5CM B N3 1
HETATM 358 C C4 . 5CM B 2 9 ? -14.755 -8.183 -6.549 1.00 15.94 ? 9 5CM B C4 1
HETATM 359 C C5 . 5CM B 2 9 ? -14.458 -8.283 -7.932 1.00 15.11 ? 9 5CM B C5 1
HETATM 360 C C5A . 5CM B 2 9 ? -13.097 -8.066 -8.461 1.00 17.06 ? 9 5CM B C5A 1
HETATM 361 C C6 . 5CM B 2 9 ? -15.500 -8.614 -8.754 1.00 16.14 ? 9 5CM B C6 1
HETATM 362 O O2 . 5CM B 2 9 ? -18.152 -8.843 -6.373 1.00 17.08 ? 9 5CM B O2 1
HETATM 363 N N4 . 5CM B 2 9 ? -13.724 -7.867 -5.643 1.00 18.39 ? 9 5CM B N4 1
HETATM 364 C "C1'" . 5CM B 2 9 ? -17.868 -9.178 -9.092 1.00 16.91 ? 9 5CM B "C1'" 1
HETATM 365 C "C2'" . 5CM B 2 9 ? -18.637 -7.931 -9.565 1.00 18.28 ? 9 5CM B "C2'" 1
HETATM 366 C "C3'" . 5CM B 2 9 ? -18.124 -7.786 -10.991 1.00 15.96 ? 9 5CM B "C3'" 1
HETATM 367 C "C4'" . 5CM B 2 9 ? -17.825 -9.257 -11.382 1.00 17.82 ? 9 5CM B "C4'" 1
HETATM 368 O "O4'" . 5CM B 2 9 ? -17.342 -9.858 -10.198 1.00 16.01 ? 9 5CM B "O4'" 1
HETATM 369 O "O3'" . 5CM B 2 9 ? -19.118 -7.180 -11.778 1.00 18.69 ? 9 5CM B "O3'" 1
HETATM 370 C "C5'" . 5CM B 2 9 ? -16.697 -9.296 -12.474 1.00 17.76 ? 9 5CM B "C5'" 1
HETATM 371 O "O5'" . 5CM B 2 9 ? -15.626 -8.682 -11.918 1.00 17.16 ? 9 5CM B "O5'" 1
HETATM 372 P P . 5CM B 2 9 ? -14.147 -8.737 -12.853 1.00 16.90 ? 9 5CM B P 1
HETATM 373 O OP1 . 5CM B 2 9 ? -14.600 -8.460 -14.286 1.00 20.54 ? 9 5CM B OP1 1
HETATM 374 O OP2 . 5CM B 2 9 ? -13.211 -7.742 -12.188 1.00 18.26 ? 9 5CM B OP2 1
HETATM 375 N N1 . SPM C 3 . ? -22.261 -8.220 -13.046 1.00 28.95 ? 101 SPM B N1 1
HETATM 376 C C2 . SPM C 3 . ? -22.169 -9.188 -14.124 1.00 24.51 ? 101 SPM B C2 1
HETATM 377 C C3 . SPM C 3 . ? -21.215 -8.712 -15.218 1.00 27.31 ? 101 SPM B C3 1
HETATM 378 C C4 . SPM C 3 . ? -21.018 -9.846 -16.225 1.00 23.99 ? 101 SPM B C4 1
HETATM 379 N N5 . SPM C 3 . ? -20.040 -9.467 -17.232 1.00 26.62 ? 101 SPM B N5 1
HETATM 380 C C6 . SPM C 3 . ? -18.718 -9.387 -16.636 1.00 24.56 ? 101 SPM B C6 1
HETATM 381 C C7 . SPM C 3 . ? -18.151 -10.785 -16.396 1.00 18.89 ? 101 SPM B C7 1
HETATM 382 C C8 . SPM C 3 . ? -16.633 -10.686 -16.333 1.00 23.80 ? 101 SPM B C8 1
HETATM 383 C C9 . SPM C 3 . ? -16.037 -12.013 -15.872 1.00 22.24 ? 101 SPM B C9 1
HETATM 384 N N10 . SPM C 3 . ? -14.589 -11.892 -15.773 1.00 23.02 ? 101 SPM B N10 1
HETATM 385 C C11 . SPM C 3 . ? -14.017 -13.213 -15.655 1.00 20.47 ? 101 SPM B C11 1
HETATM 386 C C12 . SPM C 3 . ? -12.660 -13.129 -14.980 1.00 27.29 ? 101 SPM B C12 1
HETATM 387 C C13 . SPM C 3 . ? -11.553 -13.083 -16.022 1.00 28.32 ? 101 SPM B C13 1
HETATM 388 N N14 . SPM C 3 . ? -10.872 -11.825 -15.861 1.00 28.15 ? 101 SPM B N14 1
HETATM 389 O O . HOH D 4 . ? -13.415 -24.254 4.023 1.00 31.39 ? 101 HOH A O 1
HETATM 390 O O . HOH D 4 . ? -16.949 -21.437 -3.866 1.00 30.11 ? 102 HOH A O 1
HETATM 391 O O . HOH D 4 . ? -21.678 -16.535 -7.827 1.00 29.16 ? 103 HOH A O 1
HETATM 392 O O . HOH D 4 . ? -22.073 -13.696 4.485 1.00 32.03 ? 104 HOH A O 1
HETATM 393 O O . HOH D 4 . ? -20.448 -19.723 -1.150 1.00 36.44 ? 105 HOH A O 1
HETATM 394 O O . HOH D 4 . ? -2.634 -31.504 2.212 1.00 33.00 ? 106 HOH A O 1
HETATM 395 O O . HOH D 4 . ? -3.403 -24.477 12.317 1.00 25.71 ? 107 HOH A O 1
HETATM 396 O O . HOH D 4 . ? -22.445 -6.735 3.484 1.00 26.97 ? 108 HOH A O 1
HETATM 397 O O . HOH D 4 . ? -20.621 -22.968 -5.195 1.00 32.32 ? 109 HOH A O 1
HETATM 398 O O . HOH D 4 . ? -7.747 -24.832 -6.319 1.00 26.16 ? 110 HOH A O 1
HETATM 399 O O . HOH D 4 . ? -9.933 -27.160 5.262 1.00 25.30 ? 111 HOH A O 1
HETATM 400 O O . HOH D 4 . ? -14.190 -22.813 -0.056 1.00 31.00 ? 112 HOH A O 1
HETATM 401 O O . HOH D 4 . ? -12.067 -7.661 -1.428 1.00 31.87 ? 113 HOH A O 1
HETATM 402 O O . HOH D 4 . ? -15.366 -20.275 -1.173 1.00 29.17 ? 114 HOH A O 1
HETATM 403 O O . HOH D 4 . ? -14.251 -17.290 -0.953 1.00 23.05 ? 115 HOH A O 1
HETATM 404 O O A HOH D 4 . ? -14.427 -13.864 0.401 0.51 22.54 ? 116 HOH A O 1
HETATM 405 O O B HOH D 4 . ? -15.854 -14.678 0.482 0.49 24.78 ? 116 HOH A O 1
HETATM 406 O O . HOH D 4 . ? -0.936 -27.542 10.943 1.00 28.44 ? 117 HOH A O 1
HETATM 407 O O . HOH D 4 . ? -20.392 -11.073 -4.990 1.00 21.29 ? 118 HOH A O 1
HETATM 408 O O . HOH D 4 . ? -17.089 -17.947 -2.430 1.00 23.10 ? 119 HOH A O 1
HETATM 409 O O . HOH D 4 . ? -5.346 -22.616 -0.743 1.00 31.75 ? 120 HOH A O 1
HETATM 410 O O . HOH D 4 . ? -25.127 -15.079 -1.003 1.00 31.37 ? 121 HOH A O 1
HETATM 411 O O . HOH D 4 . ? -12.506 -10.617 0.051 1.00 30.42 ? 122 HOH A O 1
HETATM 412 O O . HOH D 4 . ? -22.927 -18.691 -1.156 1.00 33.39 ? 123 HOH A O 1
HETATM 413 O O . HOH D 4 . ? -7.611 -22.157 -5.326 1.00 28.73 ? 124 HOH A O 1
HETATM 414 O O . HOH D 4 . ? -17.738 -22.012 -11.006 1.00 28.64 ? 125 HOH A O 1
HETATM 415 O O . HOH D 4 . ? -17.786 -17.085 -0.001 1.00 29.32 ? 126 HOH A O 1
HETATM 416 O O . HOH D 4 . ? -18.360 -24.649 -10.445 1.00 32.79 ? 127 HOH A O 1
HETATM 417 O O . HOH D 4 . ? -1.147 -26.779 2.486 1.00 31.08 ? 128 HOH A O 1
HETATM 418 O O . HOH D 4 . ? -0.217 -28.831 3.934 1.00 32.50 ? 129 HOH A O 1
HETATM 419 O O . HOH D 4 . ? -2.659 -31.779 14.125 1.00 33.46 ? 130 HOH A O 1
HETATM 420 O O . HOH D 4 . ? -4.741 -32.756 1.064 1.00 36.92 ? 131 HOH A O 1
HETATM 421 O O . HOH E 4 . ? -8.692 -12.344 -15.131 1.00 32.75 ? 201 HOH B O 1
HETATM 422 O O . HOH E 4 . ? -19.704 -21.176 8.762 1.00 31.45 ? 202 HOH B O 1
HETATM 423 O O . HOH E 4 . ? -3.632 -10.442 -9.630 1.00 36.19 ? 203 HOH B O 1
HETATM 424 O O . HOH E 4 . ? -13.173 -8.138 -16.336 1.00 31.24 ? 204 HOH B O 1
HETATM 425 O O . HOH E 4 . ? -10.833 -6.838 -12.223 1.00 32.23 ? 205 HOH B O 1
HETATM 426 O O . HOH E 4 . ? -7.536 -11.951 2.633 1.00 26.19 ? 206 HOH B O 1
HETATM 427 O O . HOH E 4 . ? -12.338 -16.640 2.147 1.00 30.20 ? 207 HOH B O 1
HETATM 428 O O . HOH E 4 . ? -2.697 -11.064 -3.932 1.00 32.25 ? 208 HOH B O 1
HETATM 429 O O . HOH E 4 . ? -18.593 -6.583 -14.292 1.00 19.99 ? 209 HOH B O 1
HETATM 430 O O . HOH E 4 . ? -20.607 -5.163 -10.788 1.00 24.66 ? 210 HOH B O 1
HETATM 431 O O . HOH E 4 . ? -7.211 -13.428 0.342 1.00 23.14 ? 211 HOH B O 1
HETATM 432 O O . HOH E 4 . ? -9.121 -8.728 -13.985 1.00 33.86 ? 212 HOH B O 1
HETATM 433 O O . HOH E 4 . ? -6.053 -9.008 -8.603 1.00 31.69 ? 213 HOH B O 1
HETATM 434 O O . HOH E 4 . ? -16.206 -6.661 -15.551 1.00 23.06 ? 214 HOH B O 1
HETATM 435 O O . HOH E 4 . ? -12.265 -13.633 8.619 1.00 33.12 ? 215 HOH B O 1
HETATM 436 O O . HOH E 4 . ? -14.690 -24.788 6.348 1.00 25.34 ? 216 HOH B O 1
HETATM 437 O O . HOH E 4 . ? -9.018 -13.785 5.550 1.00 27.07 ? 217 HOH B O 1
HETATM 438 O O . HOH E 4 . ? -20.419 -16.739 10.826 1.00 34.20 ? 218 HOH B O 1
HETATM 439 O O . HOH E 4 . ? -6.386 -20.129 -6.576 1.00 22.67 ? 219 HOH B O 1
HETATM 440 O O . HOH E 4 . ? -4.938 -22.036 3.190 1.00 26.79 ? 220 HOH B O 1
HETATM 441 O O . HOH E 4 . ? -11.161 -9.054 -15.767 1.00 35.18 ? 221 HOH B O 1
HETATM 442 O O . HOH E 4 . ? -13.928 -15.102 15.173 1.00 32.23 ? 222 HOH B O 1
HETATM 443 O O . HOH E 4 . ? -13.898 -15.524 8.417 1.00 33.73 ? 223 HOH B O 1
HETATM 444 O O . HOH E 4 . ? -17.217 -15.831 10.724 1.00 34.96 ? 224 HOH B O 1
HETATM 445 O O . HOH E 4 . ? -5.952 -9.563 -6.003 1.00 30.11 ? 225 HOH B O 1
HETATM 446 O O . HOH E 4 . ? -20.945 -8.419 -6.469 1.00 25.43 ? 226 HOH B O 1
HETATM 447 O O . HOH E 4 . ? -15.695 -18.989 9.153 1.00 23.27 ? 227 HOH B O 1
HETATM 448 O O . HOH E 4 . ? -10.013 -9.006 -3.417 1.00 28.76 ? 228 HOH B O 1
HETATM 449 O O . HOH E 4 . ? -19.100 -17.166 14.758 1.00 30.90 ? 229 HOH B O 1
HETATM 450 O O . HOH E 4 . ? -5.832 -10.167 -1.349 1.00 32.88 ? 230 HOH B O 1
HETATM 451 O O . HOH E 4 . ? -13.808 -18.452 4.864 1.00 31.71 ? 231 HOH B O 1
HETATM 452 O O . HOH E 4 . ? -10.974 -6.835 -5.718 1.00 24.92 ? 232 HOH B O 1
HETATM 453 O O . HOH E 4 . ? -9.802 -13.945 -0.287 1.00 23.64 ? 233 HOH B O 1
HETATM 454 O O . HOH E 4 . ? -15.241 -20.334 6.514 1.00 28.77 ? 234 HOH B O 1
HETATM 455 O O . HOH E 4 . ? -2.225 -14.606 -9.591 1.00 31.58 ? 235 HOH B O 1
HETATM 456 O O . HOH E 4 . ? -20.981 -27.408 11.140 1.00 29.78 ? 236 HOH B O 1
HETATM 457 O O . HOH E 4 . ? -5.668 -9.956 1.780 1.00 35.94 ? 237 HOH B O 1
HETATM 458 O O . HOH E 4 . ? -19.193 -23.606 8.324 1.00 28.76 ? 238 HOH B O 1
HETATM 459 O O . HOH E 4 . ? -11.597 -13.857 4.341 1.00 33.08 ? 239 HOH B O 1
HETATM 460 O O . HOH E 4 . ? -17.239 -21.667 5.654 1.00 38.29 ? 240 HOH B O 1
HETATM 461 O O . HOH E 4 . ? -7.560 -8.556 -3.925 1.00 36.45 ? 241 HOH B O 1
HETATM 462 O O . HOH E 4 . ? -14.746 -16.426 5.808 1.00 38.58 ? 242 HOH B O 1
HETATM 463 O O . HOH E 4 . ? -5.319 -6.186 -8.744 1.00 43.53 ? 243 HOH B O 1
#