data_9BJN
#
_entry.id 9BJN
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.403
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 9BJN pdb_00009bjn 10.2210/pdb9bjn/pdb
WWPDB D_1000283473 ? ?
EMDB EMD-44636 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
_pdbx_audit_revision_history.part_number
1 'Structure model' 1 0 2024-09-18 ?
2 'EM metadata' 1 0 2024-09-18 ?
3 'Half map' 1 0 2024-09-18 1
4 'Half map' 1 0 2024-09-18 2
5 Image 1 0 2024-09-18 ?
6 'Primary map' 1 0 2024-09-18 ?
7 'Structure model' 1 1 2024-10-02 ?
8 'Half map' 1 0 2024-09-18 1
9 'Half map' 1 0 2024-09-18 2
10 Image 1 0 2024-09-18 ?
11 'Primary map' 1 0 2024-09-18 ?
12 'Structure model' 1 2 2025-05-21 ?
13 'EM metadata' 1 1 2025-05-21 ?
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 2 'EM metadata' repository 'Initial release' ? ?
3 3 'Half map' repository 'Initial release' ? ?
4 4 'Half map' repository 'Initial release' ? ?
5 5 Image repository 'Initial release' ? ?
6 6 'Primary map' repository 'Initial release' ? ?
7 8 'Half map' repository 'Initial release' ? ?
8 9 'Half map' repository 'Initial release' ? ?
9 10 Image repository 'Initial release' ? ?
10 11 'Primary map' repository 'Initial release' ? ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 7 'Structure model' 'Data collection'
2 7 'Structure model' 'Database references'
3 7 'Structure model' 'Derived calculations'
4 12 'Structure model' 'Data collection'
5 12 'Structure model' 'Structure summary'
6 13 'EM metadata' 'Data processing'
7 13 'EM metadata' 'Experimental summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 7 'Structure model' citation
2 7 'Structure model' em_admin
3 7 'Structure model' struct_conn
4 12 'Structure model' em_admin
5 12 'Structure model' em_software
6 12 'Structure model' pdbx_entry_details
7 12 'Structure model' pdbx_modification_feature
8 13 'EM metadata' em_admin
9 13 'EM metadata' em_software
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 7 'Structure model' '_citation.journal_volume'
2 7 'Structure model' '_citation.page_first'
3 7 'Structure model' '_citation.page_last'
4 7 'Structure model' '_em_admin.last_update'
5 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
6 12 'Structure model' '_em_admin.last_update'
7 12 'Structure model' '_em_software.name'
8 12 'Structure model' '_pdbx_entry_details.has_protein_modification'
9 13 'EM metadata' '_em_admin.last_update'
10 13 'EM metadata' '_em_software.name'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 9BJN
_pdbx_database_status.recvd_initial_deposition_date 2024-04-25
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible N
#
_pdbx_database_related.db_name EMDB
_pdbx_database_related.details 'Cryo-EM of Azo-ffspy fiber'
_pdbx_database_related.db_id EMD-44636
_pdbx_database_related.content_type 'associated EM volume'
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email fw2@uab.edu
_pdbx_contact_author.name_first Fengbin
_pdbx_contact_author.name_last Wang
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Zia, A.' 1 ?
'Guo, J.' 2 ?
'Xu, B.' 3 ?
'Wang, F.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_id_ASTM JACSAT
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1520-5126
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 146
_citation.language ?
_citation.page_first 26102
_citation.page_last 26112
_citation.title 'Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars.'
_citation.year 2024
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/jacs.4c06775
_citation.pdbx_database_id_PubMed 39255453
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Guo, J.' 1 0000-0002-0254-0401
primary 'Zia, A.' 2 ?
primary 'Qiu, Q.' 3 ?
primary 'Norton, M.' 4 ?
primary 'Qiu, K.' 5 ?
primary 'Usuba, J.' 6 ?
primary 'Liu, Z.' 7 ?
primary 'Yi, M.' 8 0000-0002-1912-1043
primary 'Rich-New, S.T.' 9 ?
primary 'Hagan, M.' 10 0000-0002-9211-2434
primary 'Fraden, S.' 11 ?
primary 'Han, G.D.' 12 ?
primary 'Diao, J.' 13 0000-0003-4288-3203
primary 'Wang, F.' 14 0000-0003-1008-663X
primary 'Xu, B.' 15 0000-0002-4639-387X
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'D-peptide ffspy'
_entity.formula_weight 850.809
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(D)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(A1APX)(DPN)(DPN)(DSN)(A1AP1)'
_entity_poly.pdbx_seq_one_letter_code_can XFFSW
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 A1APX n
1 2 DPN n
1 3 DPN n
1 4 DSN n
1 5 A1AP1 n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 5
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A1AP1 'D-peptide linking' . O-phosphono-D-tyrosine ? 'C9 H12 N O6 P' 261.168
A1APX non-polymer . '4-[(E)-phenyldiazenyl]benzoic acid' ? 'C13 H10 N2 O2' 226.231
DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189
DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 A1APX 1 1 1 A1APX AZO A . n
A 1 2 DPN 2 2 2 DPN DPN A . n
A 1 3 DPN 3 3 3 DPN DPN A . n
A 1 4 DSN 4 4 4 DSN DSN A . n
A 1 5 A1AP1 5 5 5 A1AP1 DP5 A . n
#
loop_
_pdbx_entity_instance_feature.ordinal
_pdbx_entity_instance_feature.comp_id
_pdbx_entity_instance_feature.asym_id
_pdbx_entity_instance_feature.seq_num
_pdbx_entity_instance_feature.auth_comp_id
_pdbx_entity_instance_feature.auth_asym_id
_pdbx_entity_instance_feature.auth_seq_num
_pdbx_entity_instance_feature.feature_type
_pdbx_entity_instance_feature.details
1 A1APX ? ? A1APX ? ? 'SUBJECT OF INVESTIGATION' ?
2 A1AP1 ? ? A1AP1 ? ? 'SUBJECT OF INVESTIGATION' ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 9BJN
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.method_details ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 9BJN
_refine.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high .
_refine.ls_d_res_low ?
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON MICROSCOPY' ? 0.009 ? 5040 ? f_bond_d ? ?
'ELECTRON MICROSCOPY' ? 2.634 ? 6640 ? f_angle_d ? ?
'ELECTRON MICROSCOPY' ? 18.983 ? 1040 ? f_dihedral_angle_d ? ?
'ELECTRON MICROSCOPY' ? 0.041 ? 320 ? f_chiral_restr ? ?
'ELECTRON MICROSCOPY' ? 0.011 ? 640 ? f_plane_restr ? ?
#
_struct.entry_id 9BJN
_struct.title 'Cryo-EM of Azo-ffspy fiber'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 9BJN
_struct_keywords.text 'D-peptide, peptide-fiber, helical, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 9BJN
_struct_ref.pdbx_db_accession 9BJN
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 9BJN
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 5
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 9BJN
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 5
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 5
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 'representative helical assembly' ? 24-meric 24
2 'helical asymmetric unit' ? monomeric 1
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 '(1-24)' A
2 13 A
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy'
_pdbx_struct_assembly_auth_evidence.details 'not applicable'
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'helical symmetry operation' ? ? 0.15850300 -0.98735900 0.00000000 0.00000 0.98735900 0.15850300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -6.97200
2 'helical symmetry operation' ? ? -0.15850300 0.98735900 0.00000000 0.00000 -0.98735900 -0.15850300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -6.97200
3 'helical symmetry operation' ? ? -0.60737600 -0.79441500 0.00000000 0.00000 0.79441500 -0.60737600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -5.81000
4 'helical symmetry operation' ? ? 0.60737600 0.79441500 0.00000000 0.00000 -0.79441500 0.60737600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -5.81000
5 'helical symmetry operation' ? ? -0.99437500 -0.10591700 0.00000000 0.00000 0.10591700 -0.99437500 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -4.64800
6 'helical symmetry operation' ? ? 0.99437500 0.10591700 0.00000000 0.00000 -0.10591700 0.99437500 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -4.64800
7 'helical symmetry operation' ? ? -0.76108600 0.64865100 0.00000000 0.00000 -0.64865100 -0.76108600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -3.48600
8 'helical symmetry operation' ? ? 0.76108600 -0.64865100 0.00000000 0.00000 0.64865100 0.76108600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -3.48600
9 'helical symmetry operation' ? ? -0.05303300 0.99859300 0.00000000 0.00000 -0.99859300 -0.05303300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -2.32400
10 'helical symmetry operation' ? ? 0.05303300 -0.99859300 0.00000000 0.00000 0.99859300 0.05303300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -2.32400
11 'helical symmetry operation' ? ? 0.68810100 0.72561500 0.00000000 0.00000 -0.72561500 0.68810100 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -1.16200
12 'helical symmetry operation' ? ? -0.68810100 -0.72561500 0.00000000 0.00000 0.72561500 -0.68810100 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -1.16200
13 'identity operation' 1_555 x,y,z 1.00000000 -0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 0.00000
14 'helical symmetry operation' ? ? -1.00000000 -0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 0.00000
15 'helical symmetry operation' ? ? 0.68810100 -0.72561500 0.00000000 0.00000 0.72561500 0.68810100 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 1.16200
16 'helical symmetry operation' ? ? -0.68810100 0.72561500 0.00000000 0.00000 -0.72561500 -0.68810100 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 1.16200
17 'helical symmetry operation' ? ? -0.05303300 -0.99859300 0.00000000 0.00000 0.99859300 -0.05303300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 2.32400
18 'helical symmetry operation' ? ? 0.05303300 0.99859300 0.00000000 0.00000 -0.99859300 0.05303300 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 2.32400
19 'helical symmetry operation' ? ? -0.76108600 -0.64865100 0.00000000 0.00000 0.64865100 -0.76108600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 3.48600
20 'helical symmetry operation' ? ? 0.76108600 0.64865100 0.00000000 0.00000 -0.64865100 0.76108600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 3.48600
21 'helical symmetry operation' ? ? -0.99437500 0.10591700 0.00000000 0.00000 -0.10591700 -0.99437500 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 4.64800
22 'helical symmetry operation' ? ? 0.99437500 -0.10591700 0.00000000 0.00000 0.10591700 0.99437500 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 4.64800
23 'helical symmetry operation' ? ? -0.60737600 0.79441500 0.00000000 0.00000 -0.79441500 -0.60737600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 5.81000
24 'helical symmetry operation' ? ? 0.60737600 -0.79441500 0.00000000 0.00000 0.79441500 0.60737600 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 5.81000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A A1APX 1 C ? ? ? 1_555 A DPN 2 N ? ? A A1APX 1 A DPN 2 1_555 ? ? ? ? ? ? ? 1.428 ? ?
covale2 covale one ? A A1APX 1 O ? ? ? 1_555 A DPN 2 N ? ? A A1APX 1 A DPN 2 1_555 ? ? ? ? ? ? ? 1.282 ? ?
covale3 covale both ? A DPN 2 C ? ? ? 1_555 A DPN 3 N ? ? A DPN 2 A DPN 3 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale4 covale both ? A DPN 3 C ? ? ? 1_555 A DSN 4 N ? ? A DPN 3 A DSN 4 1_555 ? ? ? ? ? ? ? 1.330 ? ?
covale5 covale both ? A DSN 4 C ? ? ? 1_555 A A1AP1 5 N ? ? A DSN 4 A A1AP1 5 1_555 ? ? ? ? ? ? ? 1.327 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 A1AP1 A 5 ? . . . . A1AP1 A 5 ? 1_555 . . . . . . . DTY 1 A1AP1 Phosphorylation 'Named protein modification'
2 A1APX A 1 ? . . . . A1APX A 1 ? 1_555 . . . . . . . ? 1 A1APX None 'Non-standard residue'
#
_pdbx_entry_details.entry_id 9BJN
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 O A A1APX 1 ? ? C A A1APX 1 ? ? N A DPN 2 ? ? 56.67 122.70 -66.03 1.60 Y
2 1 C A A1APX 1 ? ? N A DPN 2 ? ? CA A DPN 2 ? ? 136.93 121.70 15.23 2.50 Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id DPN
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 2
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 38.50
_pdbx_validate_torsion.psi -53.49
#
_pdbx_helical_symmetry.entry_id 9BJN
_pdbx_helical_symmetry.number_of_operations 24
_pdbx_helical_symmetry.rotation_per_n_subunits 46.520
_pdbx_helical_symmetry.rise_per_n_subunits 1.162
_pdbx_helical_symmetry.n_subunits_divisor 1
_pdbx_helical_symmetry.dyad_axis no
_pdbx_helical_symmetry.circular_symmetry 2
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 9BJN
_em_3d_fitting.method ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_space ?
_em_3d_fitting.ref_protocol ?
#
_em_3d_reconstruction.entry_id 9BJN
_em_3d_reconstruction.id 1
_em_3d_reconstruction.method ?
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.citation_id ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.resolution 3.0
_em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF'
_em_3d_reconstruction.magnification_calibration ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.num_particles 887952
_em_3d_reconstruction.euler_angles_details ?
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.symmetry_type HELICAL
#
_em_buffer.id 1
_em_buffer.specimen_id 1
_em_buffer.name ?
_em_buffer.details ?
_em_buffer.pH 7
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.source NATURAL
_em_entity_assembly.type COMPLEX
_em_entity_assembly.name 'ffspy fiber'
_em_entity_assembly.details ?
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
_em_entity_assembly.entity_id_list 1
#
_em_imaging.entry_id 9BJN
_em_imaging.id 1
_em_imaging.astigmatism ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.residual_tilt ?
_em_imaging.microscope_model 'FEI TITAN KRIOS'
_em_imaging.specimen_holder_type ?
_em_imaging.specimen_holder_model ?
_em_imaging.details ?
_em_imaging.date ?
_em_imaging.accelerating_voltage 300
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_min 1000
_em_imaging.nominal_defocus_max 2000
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.nominal_magnification ?
_em_imaging.calibrated_magnification ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.citation_id ?
_em_imaging.temperature ?
_em_imaging.detector_distance ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.specimen_id 1
_em_imaging.cryogen ?
#
_em_vitrification.entry_id 9BJN
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.cryogen_name ETHANE
_em_vitrification.humidity ?
_em_vitrification.temp ?
_em_vitrification.chamber_temperature ?
_em_vitrification.instrument ?
_em_vitrification.method ?
_em_vitrification.time_resolved_state ?
_em_vitrification.citation_id ?
_em_vitrification.details ?
#
_em_experiment.entry_id 9BJN
_em_experiment.id 1
_em_experiment.reconstruction_method HELICAL
_em_experiment.aggregation_state FILAMENT
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A1AP1 N N N N 1
A1AP1 CA C N R 2
A1AP1 C C N N 3
A1AP1 O O N N 4
A1AP1 CB C N N 5
A1AP1 CG C Y N 6
A1AP1 CD1 C Y N 7
A1AP1 CE1 C Y N 8
A1AP1 CZ C Y N 9
A1AP1 CE2 C Y N 10
A1AP1 CD2 C Y N 11
A1AP1 OH O N N 12
A1AP1 OP3 O N N 13
A1AP1 OP1 O N N 14
A1AP1 OP2 O N N 15
A1AP1 P P N N 16
A1AP1 H1 H N N 17
A1AP1 H2 H N N 18
A1AP1 HA H N N 19
A1AP1 HB2 H N N 20
A1AP1 HB3 H N N 21
A1AP1 HD1 H N N 22
A1AP1 HE1 H N N 23
A1AP1 HE2 H N N 24
A1AP1 HD2 H N N 25
A1AP1 H12 H N N 26
A1AP1 H13 H N N 27
A1AP1 OXT O N N 28
A1AP1 H3 H N N 29
A1APX C12 C Y N 30
A1APX C13 C Y N 31
A1APX C14 C Y N 32
A1APX C15 C Y N 33
A1APX C16 C Y N 34
A1APX C17 C Y N 35
A1APX C C N N 36
A1APX O O N N 37
A1APX C04 C Y N 38
A1APX C05 C Y N 39
A1APX C06 C Y N 40
A1APX C07 C Y N 41
A1APX C08 C Y N 42
A1APX C09 C Y N 43
A1APX N10 N N N 44
A1APX N11 N N N 45
A1APX O1 O N N 46
A1APX H1 H N N 47
A1APX H2 H N N 48
A1APX H3 H N N 49
A1APX H4 H N N 50
A1APX H5 H N N 51
A1APX H6 H N N 52
A1APX H7 H N N 53
A1APX H8 H N N 54
A1APX H9 H N N 55
A1APX H10 H N N 56
DPN N N N N 57
DPN CA C N R 58
DPN C C N N 59
DPN O O N N 60
DPN OXT O N N 61
DPN CB C N N 62
DPN CG C Y N 63
DPN CD1 C Y N 64
DPN CD2 C Y N 65
DPN CE1 C Y N 66
DPN CE2 C Y N 67
DPN CZ C Y N 68
DPN H H N N 69
DPN H2 H N N 70
DPN HA H N N 71
DPN HXT H N N 72
DPN HB2 H N N 73
DPN HB3 H N N 74
DPN HD1 H N N 75
DPN HD2 H N N 76
DPN HE1 H N N 77
DPN HE2 H N N 78
DPN HZ H N N 79
DSN N N N N 80
DSN CA C N R 81
DSN C C N N 82
DSN O O N N 83
DSN OXT O N N 84
DSN CB C N N 85
DSN OG O N N 86
DSN H H N N 87
DSN H2 H N N 88
DSN HA H N N 89
DSN HXT H N N 90
DSN HB2 H N N 91
DSN HB3 H N N 92
DSN HG H N N 93
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AP1 O C doub N N 1
A1AP1 C CA sing N N 2
A1AP1 N CA sing N N 3
A1AP1 CA CB sing N N 4
A1AP1 CD2 CE2 doub Y N 5
A1AP1 CD2 CG sing Y N 6
A1AP1 CE2 CZ sing Y N 7
A1AP1 CB CG sing N N 8
A1AP1 CG CD1 doub Y N 9
A1AP1 OP1 P doub N N 10
A1AP1 OP3 P sing N N 11
A1AP1 CZ OH sing N N 12
A1AP1 CZ CE1 doub Y N 13
A1AP1 OH P sing N N 14
A1AP1 CD1 CE1 sing Y N 15
A1AP1 P OP2 sing N N 16
A1AP1 N H1 sing N N 17
A1AP1 N H2 sing N N 18
A1AP1 CA HA sing N N 19
A1AP1 CB HB2 sing N N 20
A1AP1 CB HB3 sing N N 21
A1AP1 CD1 HD1 sing N N 22
A1AP1 CE1 HE1 sing N N 23
A1AP1 CE2 HE2 sing N N 24
A1AP1 CD2 HD2 sing N N 25
A1AP1 OP3 H12 sing N N 26
A1AP1 OP2 H13 sing N N 27
A1AP1 C OXT sing N N 28
A1AP1 OXT H3 sing N N 29
A1APX C14 C13 doub Y N 30
A1APX C14 C15 sing Y N 31
A1APX C13 C12 sing Y N 32
A1APX C15 C16 doub Y N 33
A1APX C12 N11 sing N N 34
A1APX C12 C17 doub Y N 35
A1APX C16 C17 sing Y N 36
A1APX N11 N10 doub N N 37
A1APX C06 C05 doub Y N 38
A1APX C06 C09 sing Y N 39
A1APX C05 C04 sing Y N 40
A1APX N10 C09 sing N N 41
A1APX C09 C08 doub Y N 42
A1APX O C doub N N 43
A1APX C04 C sing N N 44
A1APX C04 C07 doub Y N 45
A1APX C08 C07 sing Y N 46
A1APX C O1 sing N N 47
A1APX C13 H1 sing N N 48
A1APX C14 H2 sing N N 49
A1APX C15 H3 sing N N 50
A1APX C16 H4 sing N N 51
A1APX C17 H5 sing N N 52
A1APX C05 H6 sing N N 53
A1APX C06 H7 sing N N 54
A1APX C07 H8 sing N N 55
A1APX C08 H9 sing N N 56
A1APX O1 H10 sing N N 57
DPN N CA sing N N 58
DPN N H sing N N 59
DPN N H2 sing N N 60
DPN CA C sing N N 61
DPN CA CB sing N N 62
DPN CA HA sing N N 63
DPN C O doub N N 64
DPN C OXT sing N N 65
DPN OXT HXT sing N N 66
DPN CB CG sing N N 67
DPN CB HB2 sing N N 68
DPN CB HB3 sing N N 69
DPN CG CD1 doub Y N 70
DPN CG CD2 sing Y N 71
DPN CD1 CE1 sing Y N 72
DPN CD1 HD1 sing N N 73
DPN CD2 CE2 doub Y N 74
DPN CD2 HD2 sing N N 75
DPN CE1 CZ doub Y N 76
DPN CE1 HE1 sing N N 77
DPN CE2 CZ sing Y N 78
DPN CE2 HE2 sing N N 79
DPN CZ HZ sing N N 80
DSN N CA sing N N 81
DSN N H sing N N 82
DSN N H2 sing N N 83
DSN CA C sing N N 84
DSN CA CB sing N N 85
DSN CA HA sing N N 86
DSN C O doub N N 87
DSN C OXT sing N N 88
DSN OXT HXT sing N N 89
DSN CB OG sing N N 90
DSN CB HB2 sing N N 91
DSN CB HB3 sing N N 92
DSN OG HG sing N N 93
#
_em_admin.current_status REL
_em_admin.deposition_date 2024-04-25
_em_admin.deposition_site RCSB
_em_admin.entry_id 9BJN
_em_admin.last_update 2025-05-21
_em_admin.map_release_date 2024-09-18
_em_admin.title 'Cryo-EM of Azo-ffspy fiber'
#
_em_ctf_correction.details ?
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.id 1
_em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION'
#
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.id 2
_em_entity_assembly_naturalsource.ncbi_tax_id 32630
_em_entity_assembly_naturalsource.organism 'synthetic construct'
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
_em_entity_assembly_naturalsource.details ?
#
_em_helical_entity.id 1
_em_helical_entity.image_processing_id 1
_em_helical_entity.details ?
_em_helical_entity.axial_symmetry C2
_em_helical_entity.angular_rotation_per_subunit 46.520
_em_helical_entity.axial_rise_per_subunit 1.162
#
_em_image_processing.details ?
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
#
_em_image_recording.average_exposure_time ?
_em_image_recording.avg_electron_dose_per_subtomogram ?
_em_image_recording.avg_electron_dose_per_image 50
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)'
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.category
_em_software.details
_em_software.id
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
_em_software.name
_em_software.version
'PARTICLE SELECTION' ? 1 1 ? ? ? ?
'IMAGE ACQUISITION' ? 2 ? ? 1 ? ?
MASKING ? 3 ? ? ? ? ?
'CTF CORRECTION' ? 4 1 ? ? ? ?
'LAYERLINE INDEXING' ? 5 ? ? ? ? ?
'DIFFRACTION INDEXING' ? 6 ? ? ? ? ?
'MODEL FITTING' ? 7 ? ? ? ? ?
'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ?
OTHER ? 9 ? ? ? ? ?
'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ?
'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ?
CLASSIFICATION ? 12 1 ? ? ? ?
RECONSTRUCTION ? 13 1 ? ? ? ?
'VOLUME SELECTION' ? 14 1 1 1 ? ?
'SERIES ALIGNMENT' ? 15 1 1 1 ? ?
'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ?
'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ?
'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ?
'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ?
#
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM138756 1
'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 2
#
_atom_sites.entry_id 9BJN
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 . A1APX A 1 1 ? -8.576 -2.973 3.046 1.00 112.56 ? 1 A1APX A C12 1
HETATM 2 C C13 . A1APX A 1 1 ? -7.699 -2.006 2.598 1.00 112.56 ? 1 A1APX A C13 1
HETATM 3 C C14 . A1APX A 1 1 ? -6.430 -2.332 2.157 1.00 112.56 ? 1 A1APX A C14 1
HETATM 4 C C15 . A1APX A 1 1 ? -6.002 -3.640 2.178 1.00 112.56 ? 1 A1APX A C15 1
HETATM 5 C C16 . A1APX A 1 1 ? -6.856 -4.615 2.645 1.00 112.56 ? 1 A1APX A C16 1
HETATM 6 C C17 . A1APX A 1 1 ? -8.124 -4.283 3.089 1.00 112.56 ? 1 A1APX A C17 1
HETATM 7 C C . A1APX A 1 1 ? -14.420 1.361 5.065 1.00 112.56 ? 1 A1APX A C 1
HETATM 8 O O . A1APX A 1 1 ? -15.034 1.776 4.054 1.00 112.56 ? 1 A1APX A O 1
HETATM 9 C C04 . A1APX A 1 1 ? -13.496 0.197 4.806 1.00 112.56 ? 1 A1APX A C04 1
HETATM 10 C C05 . A1APX A 1 1 ? -12.252 0.408 4.254 1.00 112.56 ? 1 A1APX A C05 1
HETATM 11 C C06 . A1APX A 1 1 ? -11.416 -0.657 4.004 1.00 112.56 ? 1 A1APX A C06 1
HETATM 12 C C07 . A1APX A 1 1 ? -13.933 -1.062 5.100 1.00 112.56 ? 1 A1APX A C07 1
HETATM 13 C C08 . A1APX A 1 1 ? -13.083 -2.115 4.872 1.00 112.56 ? 1 A1APX A C08 1
HETATM 14 C C09 . A1APX A 1 1 ? -11.827 -1.941 4.298 1.00 112.56 ? 1 A1APX A C09 1
HETATM 15 N N10 . A1APX A 1 1 ? -10.888 -3.023 3.959 1.00 112.56 ? 1 A1APX A N10 1
HETATM 16 N N11 . A1APX A 1 1 ? -9.875 -2.488 3.511 1.00 112.56 ? 1 A1APX A N11 1
HETATM 17 N N . DPN A 1 2 ? -15.734 0.927 4.712 1.00 109.94 ? 2 DPN A N 1
HETATM 18 C CA . DPN A 1 2 ? -17.098 1.241 5.106 1.00 109.94 ? 2 DPN A CA 1
HETATM 19 C C . DPN A 1 2 ? -17.292 2.727 5.358 1.00 109.94 ? 2 DPN A C 1
HETATM 20 O O . DPN A 1 2 ? -18.179 3.337 4.776 1.00 109.94 ? 2 DPN A O 1
HETATM 21 C CB . DPN A 1 2 ? -18.071 0.801 4.021 1.00 109.94 ? 2 DPN A CB 1
HETATM 22 C CG . DPN A 1 2 ? -18.147 -0.680 3.838 1.00 109.94 ? 2 DPN A CG 1
HETATM 23 C CD1 . DPN A 1 2 ? -19.099 -1.420 4.504 1.00 109.94 ? 2 DPN A CD1 1
HETATM 24 C CD2 . DPN A 1 2 ? -17.281 -1.331 2.987 1.00 109.94 ? 2 DPN A CD2 1
HETATM 25 C CE1 . DPN A 1 2 ? -19.177 -2.775 4.332 1.00 109.94 ? 2 DPN A CE1 1
HETATM 26 C CE2 . DPN A 1 2 ? -17.356 -2.686 2.814 1.00 109.94 ? 2 DPN A CE2 1
HETATM 27 C CZ . DPN A 1 2 ? -18.305 -3.408 3.487 1.00 109.94 ? 2 DPN A CZ 1
HETATM 28 N N . DPN A 1 3 ? -16.458 3.307 6.212 1.00 106.44 ? 3 DPN A N 1
HETATM 29 C CA . DPN A 1 3 ? -16.547 4.724 6.510 1.00 106.44 ? 3 DPN A CA 1
HETATM 30 C C . DPN A 1 3 ? -17.898 5.036 7.126 1.00 106.44 ? 3 DPN A C 1
HETATM 31 O O . DPN A 1 3 ? -18.491 4.182 7.769 1.00 106.44 ? 3 DPN A O 1
HETATM 32 C CB . DPN A 1 3 ? -15.492 5.118 7.519 1.00 106.44 ? 3 DPN A CB 1
HETATM 33 C CG . DPN A 1 3 ? -14.081 4.779 7.131 1.00 106.44 ? 3 DPN A CG 1
HETATM 34 C CD1 . DPN A 1 3 ? -13.441 3.706 7.700 1.00 106.44 ? 3 DPN A CD1 1
HETATM 35 C CD2 . DPN A 1 3 ? -13.375 5.564 6.257 1.00 106.44 ? 3 DPN A CD2 1
HETATM 36 C CE1 . DPN A 1 3 ? -12.120 3.412 7.400 1.00 106.44 ? 3 DPN A CE1 1
HETATM 37 C CE2 . DPN A 1 3 ? -12.052 5.262 5.947 1.00 106.44 ? 3 DPN A CE2 1
HETATM 38 C CZ . DPN A 1 3 ? -11.408 4.217 6.557 1.00 106.44 ? 3 DPN A CZ 1
HETATM 39 N N . DSN A 1 4 ? -18.379 6.263 6.949 1.00 116.17 ? 4 DSN A N 1
HETATM 40 C CA . DSN A 1 4 ? -19.668 6.656 7.512 1.00 116.17 ? 4 DSN A CA 1
HETATM 41 C C . DSN A 1 4 ? -19.816 8.163 7.614 1.00 116.17 ? 4 DSN A C 1
HETATM 42 O O . DSN A 1 4 ? -19.653 8.874 6.631 1.00 116.17 ? 4 DSN A O 1
HETATM 43 C CB . DSN A 1 4 ? -20.810 6.108 6.667 1.00 116.17 ? 4 DSN A CB 1
HETATM 44 O OG . DSN A 1 4 ? -20.922 6.829 5.457 1.00 116.17 ? 4 DSN A OG 1
HETATM 45 N N . A1AP1 A 1 5 ? -20.148 8.645 8.805 1.00 120.08 ? 5 A1AP1 A N 1
HETATM 46 C CA . A1AP1 A 1 5 ? -20.292 10.072 9.034 1.00 120.08 ? 5 A1AP1 A CA 1
HETATM 47 C C . A1AP1 A 1 5 ? -21.633 10.544 8.486 1.00 120.08 ? 5 A1AP1 A C 1
HETATM 48 O O . A1AP1 A 1 5 ? -21.677 11.196 7.412 1.00 120.08 ? 5 A1AP1 A O 1
HETATM 49 C CB . A1AP1 A 1 5 ? -20.159 10.361 10.525 1.00 120.08 ? 5 A1AP1 A CB 1
HETATM 50 C CG . A1AP1 A 1 5 ? -19.582 11.742 10.831 1.00 120.08 ? 5 A1AP1 A CG 1
HETATM 51 C CD1 . A1AP1 A 1 5 ? -20.193 12.560 11.761 1.00 120.08 ? 5 A1AP1 A CD1 1
HETATM 52 C CE1 . A1AP1 A 1 5 ? -19.670 13.811 12.040 1.00 120.08 ? 5 A1AP1 A CE1 1
HETATM 53 C CZ . A1AP1 A 1 5 ? -18.535 14.247 11.384 1.00 120.08 ? 5 A1AP1 A CZ 1
HETATM 54 C CE2 . A1AP1 A 1 5 ? -17.925 13.426 10.456 1.00 120.08 ? 5 A1AP1 A CE2 1
HETATM 55 C CD2 . A1AP1 A 1 5 ? -18.447 12.177 10.179 1.00 120.08 ? 5 A1AP1 A CD2 1
HETATM 56 O OH . A1AP1 A 1 5 ? -17.986 15.504 11.657 1.00 120.08 ? 5 A1AP1 A OH 1
HETATM 57 O OP3 . A1AP1 A 1 5 ? -18.213 18.046 11.292 1.00 120.08 ? 5 A1AP1 A OP3 1
HETATM 58 O OP1 . A1AP1 A 1 5 ? -20.207 16.639 10.978 1.00 120.08 ? 5 A1AP1 A OP1 1
HETATM 59 O OP2 . A1AP1 A 1 5 ? -19.301 17.027 13.244 1.00 120.08 ? 5 A1AP1 A OP2 1
HETATM 60 P P . A1AP1 A 1 5 ? -18.952 16.829 11.792 1.00 120.08 ? 5 A1AP1 A P 1
#