data_8RC7
#
_entry.id 8RC7
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8RC7 pdb_00008rc7 10.2210/pdb8rc7/pdb
WWPDB D_1292130977 ? ?
#
_pdbx_audit_revision_history.ordinal 1
_pdbx_audit_revision_history.data_content_type 'Structure model'
_pdbx_audit_revision_history.major_revision 1
_pdbx_audit_revision_history.minor_revision 0
_pdbx_audit_revision_history.revision_date 2024-03-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 8RC7
_pdbx_database_status.recvd_initial_deposition_date 2023-12-06
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email eleanor.dodson@york.ac.uk
_pdbx_contact_author.name_first Eleanor
_pdbx_contact_author.name_last Dodson
_pdbx_contact_author.name_mi J
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0002-8968-9814
#
_audit_author.name 'Dodson, E.J.'
_audit_author.pdbx_ordinal 1
_audit_author.identifier_ORCID 0000-0002-8968-9814
#
loop_
_citation.abstract
_citation.abstract_id_CAS
_citation.book_id_ISBN
_citation.book_publisher
_citation.book_publisher_city
_citation.book_title
_citation.coordinate_linkage
_citation.country
_citation.database_id_Medline
_citation.details
_citation.id
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_full
_citation.journal_issue
_citation.journal_volume
_citation.language
_citation.page_first
_citation.page_last
_citation.title
_citation.year
_citation.database_id_CSD
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_patent
_citation.unpublished_flag
? ? ? ? ? ? ? UK ? ? primary Nature NATUAS 0006 0028-0836 ? ? 275 ? 206 207
'The crystal structure of a hydrated gramicidin S urea complex' 1978 ? ? ? ?
?
? ? ? ? ? ? ? DK ? ? 1 'Acta Crystallogr D Biol Crystallogr' ABCRE6 0766 0907-4449 ? ? 53 ? 151 159
'Channels in the gramicidin S-with-urea structure and their possible relation to transmembrane ion transport.' 1997 ?
10.1107/S0907444995000916 15299949 ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Dodson, E.J.' 1 0000-0002-8968-9814
1 'Tishchenko, G.N.' 2 ?
1 'Andrianov, V.I.' 3 ?
1 'Vainstein, B.K.' 4 ?
1 'Woolfson, M.M.' 5 ?
1 'Dodson, E.J.' 6 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat 'Gramicidin S' 1159.461 1 ? ? ? ?
2 non-polymer syn UREA 60.055 1 ? ? ? ?
3 water nat water 18.015 9 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'V(ORN)L(DPN)PV(ORN)L(DPN)P'
_entity_poly.pdbx_seq_one_letter_code_can VALFPVALFP
_entity_poly.pdbx_strand_id D
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 UREA URE
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 VAL n
1 2 ORN n
1 3 LEU n
1 4 DPN n
1 5 PRO n
1 6 VAL n
1 7 ORN n
1 8 LEU n
1 9 DPN n
1 10 PRO n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num 1
_entity_src_nat.pdbx_end_seq_num 10
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific 'Brevibacillus brevis'
_entity_src_nat.pdbx_ncbi_taxonomy_id 1393
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
URE non-polymer . UREA ? 'C H4 N2 O' 60.055
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 VAL 1 1 3 VAL VAL D . n
A 1 2 ORN 2 2 4 ORN ORN D . n
A 1 3 LEU 3 3 5 LEU LEU D . n
A 1 4 DPN 4 4 6 DPN PHE D . n
A 1 5 PRO 5 5 7 PRO PRO D . n
A 1 6 VAL 6 6 8 VAL VAL D . n
A 1 7 ORN 7 7 9 ORN ORN D . n
A 1 8 LEU 8 8 10 LEU LEU D . n
A 1 9 DPN 9 9 1 DPN PHE D . n
A 1 10 PRO 10 10 2 PRO PRO D . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 URE 1 101 1 URE URE D .
C 3 HOH 1 201 88 HOH HOH D .
C 3 HOH 2 202 89 HOH HOH D .
C 3 HOH 3 203 85 HOH HOH D .
C 3 HOH 4 204 90 HOH HOH D .
C 3 HOH 5 205 91 HOH HOH D .
C 3 HOH 6 206 86 HOH HOH D .
C 3 HOH 7 207 1 HOH HOH D .
C 3 HOH 8 208 87 HOH HOH D .
C 3 HOH 9 209 92 HOH HOH D .
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name REFMAC
_software.os ?
_software.os_version ?
_software.type ?
_software.version 5.8.0411
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 8RC7
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 25.800
_cell.length_a_esd ?
_cell.length_b 25.800
_cell.length_b_esd ?
_cell.length_c 21.490
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 8RC7
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8RC7
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.78
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 30.93
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method ?
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'Urea, HCl, 95% Ethanol'
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 293
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.diffrn_id 1
_diffrn_detector.type CUSTOM-MADE
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 1978-01-01
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.id ?
_diffrn_detector.number_of_axes ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5406
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.target ?
_diffrn_source.type ?
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.5406
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 8RC7
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 0.98
_reflns.d_resolution_low 22.34
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 4028
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 81.1
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 210
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
_refine.aniso_B[1][1] 0.064
_refine.aniso_B[1][2] 0.032
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][2] 0.064
_refine.aniso_B[2][3] -0.000
_refine.aniso_B[3][3] -0.208
_refine.B_iso_max ?
_refine.B_iso_mean 8.880
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.978
_refine.correlation_coeff_Fo_to_Fc_free 0.988
_refine.details
;Hydrogens have been added in their riding positions.
At this resolution the FreeR is often equal to the overall R factor
;
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 8RC7
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 0.980
_refine.ls_d_res_low 22.34
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 4028
_refine.ls_number_reflns_R_free 205
_refine.ls_number_reflns_R_work 3823
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 80.738
_refine.ls_percent_reflns_R_free 5.089
_refine.ls_R_factor_all 0.140
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free 0.1318
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1400
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'MASK BULK SOLVENT'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'AB INITIO PHASING'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details 'Random selection'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.026
_refine.pdbx_overall_ESU_R_Free 0.023
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 0.276
_refine.overall_SU_ML 0.015
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 82
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 4
_refine_hist.number_atoms_solvent 9
_refine_hist.number_atoms_total 95
_refine_hist.d_res_high 0.980
_refine_hist.d_res_low 22.34
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.021 0.012 97 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.004 0.015 103 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 2.196 1.624 134 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 0.881 1.564 238 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 7.751 5.000 12 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 9.574 10.000 15 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 23.292 10.000 2 ? r_dihedral_angle_6_deg ? ?
'X-RAY DIFFRACTION' ? 1.735 0.200 16 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.013 0.020 104 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 20 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 0.244 0.200 9 ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.204 0.200 73 ? r_symmetry_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.221 0.200 42 ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? 0.168 0.200 60 ? r_symmetry_nbtor_other ? ?
'X-RAY DIFFRACTION' ? 0.119 0.200 3 ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.114 0.200 12 ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.118 0.200 3 ? r_symmetry_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 1.023 0.620 46 ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? 1.020 0.620 45 ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? 1.336 1.126 58 ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? 1.332 1.122 59 ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 2.916 0.965 51 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 2.927 0.980 50 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? 4.176 1.583 76 ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 4.228 1.597 74 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 4.488 8.265 87 ? r_lrange_it ? ?
'X-RAY DIFFRACTION' ? 4.540 8.032 87 ? r_lrange_other ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 0.980 1.005 354 . 7 141 41.8079 . 0.159 . . 0.160 . . . . . 0.160 . 20 . 0.983 0.983 0.143
'X-RAY DIFFRACTION' 1.005 1.033 372 . 8 201 56.1828 . 0.147 . . 0.150 . . . . . 0.150 . 20 . 0.984 0.997 0.095
'X-RAY DIFFRACTION' 1.033 1.063 318 . 17 206 70.1258 . 0.139 . . 0.138 . . . . . 0.138 . 20 . 0.985 0.987 0.144
'X-RAY DIFFRACTION' 1.063 1.095 333 . 12 244 76.8769 . 0.135 . . 0.133 . . . . . 0.133 . 20 . 0.988 0.978 0.174
'X-RAY DIFFRACTION' 1.095 1.131 329 . 6 248 77.2037 . 0.145 . . 0.145 . . . . . 0.145 . 20 . 0.986 0.974 0.152
'X-RAY DIFFRACTION' 1.131 1.171 310 . 17 229 79.3548 . 0.135 . . 0.137 . . . . . 0.137 . 20 . 0.988 0.990 0.116
'X-RAY DIFFRACTION' 1.171 1.215 308 . 13 233 79.8701 . 0.154 . . 0.151 . . . . . 0.151 . 20 . 0.985 0.967 0.214
'X-RAY DIFFRACTION' 1.215 1.264 285 . 13 224 83.1579 . 0.142 . . 0.142 . . . . . 0.142 . 20 . 0.986 0.986 0.140
'X-RAY DIFFRACTION' 1.264 1.320 279 . 14 225 85.6631 . 0.141 . . 0.137 . . . . . 0.137 . 20 . 0.988 0.964 0.204
'X-RAY DIFFRACTION' 1.320 1.384 271 . 9 226 86.7159 . 0.138 . . 0.138 . . . . . 0.138 . 20 . 0.986 0.992 0.127
'X-RAY DIFFRACTION' 1.384 1.459 266 . 10 225 88.3459 . 0.140 . . 0.140 . . . . . 0.140 . 20 . 0.986 0.990 0.134
'X-RAY DIFFRACTION' 1.459 1.547 240 . 7 215 92.5000 . 0.147 . . 0.149 . . . . . 0.149 . 20 . 0.986 0.992 0.113
'X-RAY DIFFRACTION' 1.547 1.653 233 . 19 194 91.4163 . 0.164 . . 0.163 . . . . . 0.163 . 20 . 0.983 0.983 0.181
'X-RAY DIFFRACTION' 1.653 1.785 214 . 12 191 94.8598 . 0.133 . . 0.132 . . . . . 0.132 . 20 . 0.989 0.992 0.151
'X-RAY DIFFRACTION' 1.785 1.954 199 . 15 179 97.4874 . 0.123 . . 0.124 . . . . . 0.124 . 20 . 0.988 0.993 0.112
'X-RAY DIFFRACTION' 1.954 2.183 185 . 5 177 98.3784 . 0.116 . . 0.119 . . . . . 0.119 . 20 . 0.992 1.000 0.033
'X-RAY DIFFRACTION' 2.183 2.516 163 . 9 151 98.1595 . 0.139 . . 0.143 . . . . . 0.143 . 20 . 0.988 0.997 0.089
'X-RAY DIFFRACTION' 2.516 3.072 145 . 5 138 98.6207 . 0.145 . . 0.142 . . . . . 0.142 . 20 . 0.987 0.992 0.205
'X-RAY DIFFRACTION' 3.072 4.304 113 . 5 108 100.0000 . 0.125 . . 0.126 . . . . . 0.126 . 20 . 0.989 0.997 0.105
'X-RAY DIFFRACTION' 4.304 22.343 73 . 2 69 97.2603 . 0.169 . . 0.170 . . . . . 0.170 . 20 . 0.984 0.998 0.145
#
_struct.entry_id 8RC7
_struct.title
'The structure of membrane-active antibiotic cyclodecapeptide gramicidin S in complex with urea'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8RC7
_struct_keywords.text 'A cyclic decapeptide, ANTIBIOTIC'
_struct_keywords.pdbx_keywords ANTIBIOTIC
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 8RC7
_struct_ref.pdbx_db_accession 8RC7
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 8RC7
_struct_ref_seq.pdbx_strand_id D
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 8RC7
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 0 ?
1 MORE 0 ?
1 'SSA (A^2)' 1390 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A VAL 1 C A ? ? 1_555 A ORN 2 N ? ? D VAL 1 D ORN 2 1_555 ? ? ? ? ? ? ? 1.343 ? ?
covale2 covale both ? A VAL 1 C B ? ? 1_555 A ORN 2 N ? ? D VAL 1 D ORN 2 1_555 ? ? ? ? ? ? ? 1.319 ? ?
covale3 covale both ? A VAL 1 N A ? ? 1_555 A PRO 10 C ? ? D VAL 1 D PRO 10 1_555 ? ? ? ? ? ? ? 1.357 ? ?
covale4 covale both ? A VAL 1 N B ? ? 1_555 A PRO 10 C ? ? D VAL 1 D PRO 10 1_555 ? ? ? ? ? ? ? 1.289 ? ?
covale5 covale both ? A ORN 2 C ? ? ? 1_555 A LEU 3 N ? ? D ORN 2 D LEU 3 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale6 covale both ? A LEU 3 C ? ? ? 1_555 A DPN 4 N ? ? D LEU 3 D DPN 4 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale7 covale both ? A DPN 4 C ? ? ? 1_555 A PRO 5 N ? ? D DPN 4 D PRO 5 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale8 covale both ? A VAL 6 C ? ? ? 1_555 A ORN 7 N ? ? D VAL 6 D ORN 7 1_555 ? ? ? ? ? ? ? 1.295 ? ?
covale9 covale both ? A ORN 7 C ? ? ? 1_555 A LEU 8 N ? ? D ORN 7 D LEU 8 1_555 ? ? ? ? ? ? ? 1.306 ? ?
covale10 covale both ? A LEU 8 C ? ? ? 1_555 A DPN 9 N ? ? D LEU 8 D DPN 9 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale11 covale both ? A DPN 9 C ? ? ? 1_555 A PRO 10 N ? ? D DPN 9 D PRO 10 1_555 ? ? ? ? ? ? ? 1.336 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_sheet.id AA1
_struct_sheet.type ?
_struct_sheet.number_strands 2
_struct_sheet.details ?
#
_struct_sheet_order.sheet_id AA1
_struct_sheet_order.range_id_1 1
_struct_sheet_order.range_id_2 2
_struct_sheet_order.offset ?
_struct_sheet_order.sense anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 ORN A 2 ? LEU A 3 ? ORN D 2 LEU D 3
AA1 2 VAL A 6 ? ORN A 7 ? VAL D 6 ORN D 7
#
_pdbx_struct_sheet_hbond.sheet_id AA1
_pdbx_struct_sheet_hbond.range_id_1 1
_pdbx_struct_sheet_hbond.range_id_2 2
_pdbx_struct_sheet_hbond.range_1_label_atom_id N
_pdbx_struct_sheet_hbond.range_1_label_comp_id LEU
_pdbx_struct_sheet_hbond.range_1_label_asym_id A
_pdbx_struct_sheet_hbond.range_1_label_seq_id 3
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_1_auth_atom_id N
_pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU
_pdbx_struct_sheet_hbond.range_1_auth_asym_id D
_pdbx_struct_sheet_hbond.range_1_auth_seq_id 3
_pdbx_struct_sheet_hbond.range_2_label_atom_id O
_pdbx_struct_sheet_hbond.range_2_label_comp_id VAL
_pdbx_struct_sheet_hbond.range_2_label_asym_id A
_pdbx_struct_sheet_hbond.range_2_label_seq_id 6
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_2_auth_atom_id O
_pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL
_pdbx_struct_sheet_hbond.range_2_auth_asym_id D
_pdbx_struct_sheet_hbond.range_2_auth_seq_id 6
#
_pdbx_molecule_features.prd_id PRD_000219
_pdbx_molecule_features.name 'GRAMICIDIN S'
_pdbx_molecule_features.type 'Cyclic peptide'
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;GRAMICIDIN S IS A DECAPEPTIDE,
RESIDUES 1 AND 10 FORM A PEPTIDE BOND
RESULTING IN CYCLIZATION.
;
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_000219
_pdbx_molecule.asym_id A
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 D URE 101 ? B URE .
2 1 D URE 101 ? B URE .
3 1 D HOH 206 ? C HOH .
4 1 D HOH 207 ? C HOH .
#
_pdbx_entry_details.entry_id 8RC7
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.compound_details
;GRAMICIDIN S IS A CYCLODECAPEPTIDE, CONSTRUCTED AS TWO
IDENTICAL PENTAPEPTIDES JOINED HEAD TO TAIL, PRODUCED BY
THE GRAM POSITIVE BACTERIUM BACILLUS BREVIS
HERE, GRAMICIDIN S IS REPRESENTED BY THE SEQUENCE (SEQRES)
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DPN N N N N 1
DPN CA C N R 2
DPN C C N N 3
DPN O O N N 4
DPN OXT O N N 5
DPN CB C N N 6
DPN CG C Y N 7
DPN CD1 C Y N 8
DPN CD2 C Y N 9
DPN CE1 C Y N 10
DPN CE2 C Y N 11
DPN CZ C Y N 12
DPN H H N N 13
DPN H2 H N N 14
DPN HA H N N 15
DPN HXT H N N 16
DPN HB2 H N N 17
DPN HB3 H N N 18
DPN HD1 H N N 19
DPN HD2 H N N 20
DPN HE1 H N N 21
DPN HE2 H N N 22
DPN HZ H N N 23
HOH O O N N 24
HOH H1 H N N 25
HOH H2 H N N 26
LEU N N N N 27
LEU CA C N S 28
LEU C C N N 29
LEU O O N N 30
LEU CB C N N 31
LEU CG C N N 32
LEU CD1 C N N 33
LEU CD2 C N N 34
LEU OXT O N N 35
LEU H H N N 36
LEU H2 H N N 37
LEU HA H N N 38
LEU HB2 H N N 39
LEU HB3 H N N 40
LEU HG H N N 41
LEU HD11 H N N 42
LEU HD12 H N N 43
LEU HD13 H N N 44
LEU HD21 H N N 45
LEU HD22 H N N 46
LEU HD23 H N N 47
LEU HXT H N N 48
ORN N N N N 49
ORN CA C N S 50
ORN CB C N N 51
ORN CG C N N 52
ORN CD C N N 53
ORN NE N N N 54
ORN C C N N 55
ORN O O N N 56
ORN OXT O N N 57
ORN H H N N 58
ORN H2 H N N 59
ORN HA H N N 60
ORN HB2 H N N 61
ORN HB3 H N N 62
ORN HG2 H N N 63
ORN HG3 H N N 64
ORN HD2 H N N 65
ORN HD3 H N N 66
ORN HE1 H N N 67
ORN HE2 H N N 68
ORN HXT H N N 69
PRO N N N N 70
PRO CA C N S 71
PRO C C N N 72
PRO O O N N 73
PRO CB C N N 74
PRO CG C N N 75
PRO CD C N N 76
PRO OXT O N N 77
PRO H H N N 78
PRO HA H N N 79
PRO HB2 H N N 80
PRO HB3 H N N 81
PRO HG2 H N N 82
PRO HG3 H N N 83
PRO HD2 H N N 84
PRO HD3 H N N 85
PRO HXT H N N 86
URE C C N N 87
URE O O N N 88
URE N1 N N N 89
URE N2 N N N 90
URE HN11 H N N 91
URE HN12 H N N 92
URE HN21 H N N 93
URE HN22 H N N 94
VAL N N N N 95
VAL CA C N S 96
VAL C C N N 97
VAL O O N N 98
VAL CB C N N 99
VAL CG1 C N N 100
VAL CG2 C N N 101
VAL OXT O N N 102
VAL H H N N 103
VAL H2 H N N 104
VAL HA H N N 105
VAL HB H N N 106
VAL HG11 H N N 107
VAL HG12 H N N 108
VAL HG13 H N N 109
VAL HG21 H N N 110
VAL HG22 H N N 111
VAL HG23 H N N 112
VAL HXT H N N 113
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DPN N CA sing N N 1
DPN N H sing N N 2
DPN N H2 sing N N 3
DPN CA C sing N N 4
DPN CA CB sing N N 5
DPN CA HA sing N N 6
DPN C O doub N N 7
DPN C OXT sing N N 8
DPN OXT HXT sing N N 9
DPN CB CG sing N N 10
DPN CB HB2 sing N N 11
DPN CB HB3 sing N N 12
DPN CG CD1 doub Y N 13
DPN CG CD2 sing Y N 14
DPN CD1 CE1 sing Y N 15
DPN CD1 HD1 sing N N 16
DPN CD2 CE2 doub Y N 17
DPN CD2 HD2 sing N N 18
DPN CE1 CZ doub Y N 19
DPN CE1 HE1 sing N N 20
DPN CE2 CZ sing Y N 21
DPN CE2 HE2 sing N N 22
DPN CZ HZ sing N N 23
HOH O H1 sing N N 24
HOH O H2 sing N N 25
LEU N CA sing N N 26
LEU N H sing N N 27
LEU N H2 sing N N 28
LEU CA C sing N N 29
LEU CA CB sing N N 30
LEU CA HA sing N N 31
LEU C O doub N N 32
LEU C OXT sing N N 33
LEU CB CG sing N N 34
LEU CB HB2 sing N N 35
LEU CB HB3 sing N N 36
LEU CG CD1 sing N N 37
LEU CG CD2 sing N N 38
LEU CG HG sing N N 39
LEU CD1 HD11 sing N N 40
LEU CD1 HD12 sing N N 41
LEU CD1 HD13 sing N N 42
LEU CD2 HD21 sing N N 43
LEU CD2 HD22 sing N N 44
LEU CD2 HD23 sing N N 45
LEU OXT HXT sing N N 46
ORN N CA sing N N 47
ORN N H sing N N 48
ORN N H2 sing N N 49
ORN CA CB sing N N 50
ORN CA C sing N N 51
ORN CA HA sing N N 52
ORN CB CG sing N N 53
ORN CB HB2 sing N N 54
ORN CB HB3 sing N N 55
ORN CG CD sing N N 56
ORN CG HG2 sing N N 57
ORN CG HG3 sing N N 58
ORN CD NE sing N N 59
ORN CD HD2 sing N N 60
ORN CD HD3 sing N N 61
ORN NE HE1 sing N N 62
ORN NE HE2 sing N N 63
ORN C O doub N N 64
ORN C OXT sing N N 65
ORN OXT HXT sing N N 66
PRO N CA sing N N 67
PRO N CD sing N N 68
PRO N H sing N N 69
PRO CA C sing N N 70
PRO CA CB sing N N 71
PRO CA HA sing N N 72
PRO C O doub N N 73
PRO C OXT sing N N 74
PRO CB CG sing N N 75
PRO CB HB2 sing N N 76
PRO CB HB3 sing N N 77
PRO CG CD sing N N 78
PRO CG HG2 sing N N 79
PRO CG HG3 sing N N 80
PRO CD HD2 sing N N 81
PRO CD HD3 sing N N 82
PRO OXT HXT sing N N 83
URE C O doub N N 84
URE C N1 sing N N 85
URE C N2 sing N N 86
URE N1 HN11 sing N N 87
URE N1 HN12 sing N N 88
URE N2 HN21 sing N N 89
URE N2 HN22 sing N N 90
VAL N CA sing N N 91
VAL N H sing N N 92
VAL N H2 sing N N 93
VAL CA C sing N N 94
VAL CA CB sing N N 95
VAL CA HA sing N N 96
VAL C O doub N N 97
VAL C OXT sing N N 98
VAL CB CG1 sing N N 99
VAL CB CG2 sing N N 100
VAL CB HB sing N N 101
VAL CG1 HG11 sing N N 102
VAL CG1 HG12 sing N N 103
VAL CG1 HG13 sing N N 104
VAL CG2 HG21 sing N N 105
VAL CG2 HG22 sing N N 106
VAL CG2 HG23 sing N N 107
VAL OXT HXT sing N N 108
#
_pdbx_audit_support.funding_organization 'Not funded'
_pdbx_audit_support.country ?
_pdbx_audit_support.grant_number ?
_pdbx_audit_support.ordinal 1
#
_atom_sites.entry_id 8RC7
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.Cartn_transform_axes ?
_atom_sites.fract_transf_matrix[1][1] 0.038760
_atom_sites.fract_transf_matrix[1][2] 0.022378
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.044756
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.046533
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
_atom_type.pdbx_scat_Z
_atom_type.pdbx_N_electrons
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_a3
_atom_type.scat_Cromer_Mann_b3
_atom_type.scat_Cromer_Mann_a4
_atom_type.scat_Cromer_Mann_b4
C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512
H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997
N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826
O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.calc_flag
ATOM 1 N N A VAL A 1 1 ? 22.514 10.063 -0.643 0.500 5.797 0 1 VAL D N 1 ?
ATOM 2 N N B VAL A 1 1 ? 22.604 9.968 -0.680 0.500 5.311 0 1 VAL D N 1 ?
ATOM 3 C CA A VAL A 1 1 ? 21.926 9.504 0.589 0.500 6.052 0 1 VAL D CA 1 ?
ATOM 4 C CA B VAL A 1 1 ? 22.316 9.300 0.561 0.500 5.191 0 1 VAL D CA 1 ?
ATOM 5 C C A VAL A 1 1 ? 21.567 8.040 0.329 0.500 6.011 0 1 VAL D C 1 ?
ATOM 6 C C B VAL A 1 1 ? 21.581 8.002 0.330 0.500 5.329 0 1 VAL D C 1 ?
ATOM 7 O O A VAL A 1 1 ? 21.456 7.616 -0.847 0.500 6.720 0 1 VAL D O 1 ?
ATOM 8 O O B VAL A 1 1 ? 20.875 7.762 -0.667 0.500 4.968 0 1 VAL D O 1 ?
ATOM 9 C CB A VAL A 1 1 ? 20.718 10.373 1.027 0.500 8.504 0 1 VAL D CB 1 ?
ATOM 10 C CB B VAL A 1 1 ? 21.479 10.181 1.485 0.500 5.670 0 1 VAL D CB 1 ?
ATOM 11 C CG1 A VAL A 1 1 ? 19.980 9.986 2.304 0.500 8.493 0 1 VAL D CG1 1 ?
ATOM 12 C CG1 B VAL A 1 1 ? 22.209 11.485 1.802 0.500 7.409 0 1 VAL D CG1 1 ?
ATOM 13 C CG2 A VAL A 1 1 ? 21.158 11.809 1.134 0.500 9.650 0 1 VAL D CG2 1 ?
ATOM 14 C CG2 B VAL A 1 1 ? 20.134 10.424 0.878 0.500 6.517 0 1 VAL D CG2 1 ?
ATOM 15 H H1 A VAL A 1 1 ? 21.929 10.231 -1.323 0.500 5.941 0 1 VAL D H1 1 c
ATOM 16 H H1 B VAL A 1 1 ? 21.938 10.108 -1.290 0.500 5.485 0 1 VAL D H1 1 c
ATOM 17 H HA A VAL A 1 1 ? 22.600 9.536 1.291 0.500 6.387 0 1 VAL D HA 1 c
ATOM 18 H HA B VAL A 1 1 ? 23.156 9.099 1.009 0.500 5.358 0 1 VAL D HA 1 c
ATOM 19 H HB A VAL A 1 1 ? 20.059 10.328 0.291 0.500 8.175 0 1 VAL D HB 1 c
ATOM 20 H HB B VAL A 1 1 ? 21.347 9.691 2.333 0.500 6.017 0 1 VAL D HB 1 c
ATOM 21 H HG11 A VAL A 1 1 ? 20.610 9.943 3.044 0.500 8.497 0 1 VAL D HG11 1 c
ATOM 22 H HG11 B VAL A 1 1 ? 22.112 12.103 1.051 0.500 6.853 0 1 VAL D HG11 1 c
ATOM 23 H HG12 A VAL A 1 1 ? 19.560 9.117 2.186 0.500 8.497 0 1 VAL D HG12 1 c
ATOM 24 H HG12 B VAL A 1 1 ? 23.157 11.300 1.950 0.500 6.851 0 1 VAL D HG12 1 c
ATOM 25 H HG13 A VAL A 1 1 ? 19.297 10.652 2.499 0.500 8.497 0 1 VAL D HG13 1 c
ATOM 26 H HG13 B VAL A 1 1 ? 21.825 11.886 2.605 0.500 6.853 0 1 VAL D HG13 1 c
ATOM 27 H HG21 A VAL A 1 1 ? 20.387 12.372 1.326 0.500 9.290 0 1 VAL D HG21 1 c
ATOM 28 H HG21 B VAL A 1 1 ? 19.520 10.742 1.565 0.500 6.251 0 1 VAL D HG21 1 c
ATOM 29 H HG22 A VAL A 1 1 ? 21.562 12.089 0.295 0.500 9.278 0 1 VAL D HG22 1 c
ATOM 30 H HG22 B VAL A 1 1 ? 19.793 9.594 0.499 0.500 6.251 0 1 VAL D HG22 1 c
ATOM 31 H HG23 A VAL A 1 1 ? 21.809 11.897 1.852 0.500 9.290 0 1 VAL D HG23 1 c
ATOM 32 H HG23 B VAL A 1 1 ? 20.210 11.094 0.176 0.500 6.251 0 1 VAL D HG23 1 c
HETATM 33 N N . ORN A 1 2 ? 21.602 7.214 1.388 1.000 5.782 0 2 ORN D N 1 ?
HETATM 34 C CA . ORN A 1 2 ? 20.931 5.929 1.392 1.000 5.615 0 2 ORN D CA 1 ?
HETATM 35 C CB . ORN A 1 2 ? 21.857 4.824 1.822 1.000 8.006 0 2 ORN D CB 1 ?
HETATM 36 C CG . ORN A 1 2 ? 21.256 3.471 1.586 1.000 11.599 0 2 ORN D CG 1 ?
HETATM 37 C CD . ORN A 1 2 ? 22.107 2.339 2.075 1.000 16.237 0 2 ORN D CD 1 ?
HETATM 38 N NE . ORN A 1 2 ? 21.456 1.055 1.676 1.000 16.221 0 2 ORN D NE 1 ?
HETATM 39 C C . ORN A 1 2 ? 19.756 6.013 2.331 1.000 5.518 0 2 ORN D C 1 ?
HETATM 40 O O . ORN A 1 2 ? 19.869 6.500 3.456 1.000 6.667 0 2 ORN D O 1 ?
HETATM 41 H H . ORN A 1 2 ? 22.059 7.471 2.137 1.000 5.706 0 2 ORN D H 1 c
HETATM 42 H HA . ORN A 1 2 ? 20.604 5.733 0.485 1.000 6.032 0 2 ORN D HA 1 c
HETATM 43 H HB2 . ORN A 1 2 ? 22.696 4.897 1.322 1.000 8.035 0 2 ORN D HB2 1 c
HETATM 44 H HB3 . ORN A 1 2 ? 22.058 4.927 2.776 1.000 8.022 0 2 ORN D HB3 1 c
HETATM 45 H HG2 . ORN A 1 2 ? 20.387 3.421 2.036 1.000 11.454 0 2 ORN D HG2 1 c
HETATM 46 H HG3 . ORN A 1 2 ? 21.102 3.352 0.625 1.000 11.509 0 2 ORN D HG3 1 c
HETATM 47 H HD2 . ORN A 1 2 ? 23.000 2.399 1.677 1.000 15.020 0 2 ORN D HD2 1 c
HETATM 48 H HD3 . ORN A 1 2 ? 22.190 2.382 3.050 1.000 15.020 0 2 ORN D HD3 1 c
HETATM 49 H HE1 . ORN A 1 2 ? 21.928 0.341 2.004 1.000 16.220 0 2 ORN D HE1 1 c
HETATM 50 H HE2 . ORN A 1 2 ? 21.435 0.977 0.764 1.000 16.201 0 2 ORN D HE2 1 c
ATOM 51 N N . LEU A 1 3 ? 18.606 5.543 1.847 1.000 5.554 0 3 LEU D N 1 ?
ATOM 52 C CA . LEU A 1 3 ? 17.397 5.463 2.618 1.000 5.677 0 3 LEU D CA 1 ?
ATOM 53 C C . LEU A 1 3 ? 16.940 4.012 2.619 1.000 5.814 0 3 LEU D C 1 ?
ATOM 54 O O . LEU A 1 3 ? 16.269 3.575 1.698 1.000 6.906 0 3 LEU D O 1 ?
ATOM 55 C CB . LEU A 1 3 ? 16.290 6.305 2.046 1.000 7.179 0 3 LEU D CB 1 ?
ATOM 56 C CG . LEU A 1 3 ? 16.548 7.791 1.865 1.000 10.512 0 3 LEU D CG 1 ?
ATOM 57 C CD1 . LEU A 1 3 ? 17.196 7.996 0.508 1.000 15.658 0 3 LEU D CD1 1 ?
ATOM 58 C CD2 . LEU A 1 3 ? 15.187 8.514 1.935 1.000 15.468 0 3 LEU D CD2 1 ?
ATOM 59 H H . LEU A 1 3 ? 18.581 5.257 0.979 1.000 5.586 0 3 LEU D H 1 c
ATOM 60 H HA . LEU A 1 3 ? 17.585 5.743 3.543 1.000 5.937 0 3 LEU D HA 1 c
ATOM 61 H HB2 . LEU A 1 3 ? 16.047 5.933 1.176 1.000 7.493 0 3 LEU D HB2 1 c
ATOM 62 H HB3 . LEU A 1 3 ? 15.510 6.204 2.628 1.000 7.491 0 3 LEU D HB3 1 c
ATOM 63 H HG . LEU A 1 3 ? 17.146 8.121 2.581 1.000 11.294 0 3 LEU D HG 1 c
ATOM 64 H HD11 . LEU A 1 3 ? 17.204 8.947 0.293 1.000 13.846 0 3 LEU D HD11 1 c
ATOM 65 H HD12 . LEU A 1 3 ? 16.690 7.515 -0.173 1.000 13.769 0 3 LEU D HD12 1 c
ATOM 66 H HD13 . LEU A 1 3 ? 18.112 7.662 0.529 1.000 13.721 0 3 LEU D HD13 1 c
ATOM 67 H HD21 . LEU A 1 3 ? 14.851 8.488 2.848 1.000 13.742 0 3 LEU D HD21 1 c
ATOM 68 H HD22 . LEU A 1 3 ? 14.553 8.071 1.344 1.000 13.751 0 3 LEU D HD22 1 c
ATOM 69 H HD23 . LEU A 1 3 ? 15.296 9.440 1.656 1.000 13.788 0 3 LEU D HD23 1 c
HETATM 70 N N . DPN A 1 4 ? 17.333 3.259 3.629 1.000 6.485 0 4 DPN D N 1 ?
HETATM 71 C CA . DPN A 1 4 ? 17.014 1.865 3.648 1.000 6.662 0 4 DPN D CA 1 ?
HETATM 72 C C . DPN A 1 4 ? 17.582 1.210 2.429 1.000 6.850 0 4 DPN D C 1 ?
HETATM 73 O O . DPN A 1 4 ? 18.794 1.315 2.232 1.000 8.779 0 4 DPN D O 1 ?
HETATM 74 C CB . DPN A 1 4 ? 17.473 1.250 4.943 1.000 8.044 0 4 DPN D CB 1 ?
HETATM 75 C CG . DPN A 1 4 ? 17.016 -0.172 5.100 1.000 8.453 0 4 DPN D CG 1 ?
HETATM 76 C CD1 . DPN A 1 4 ? 15.725 -0.456 5.440 1.000 9.455 0 4 DPN D CD1 1 ?
HETATM 77 C CD2 . DPN A 1 4 ? 17.900 -1.207 4.965 1.000 12.855 0 4 DPN D CD2 1 ?
HETATM 78 C CE1 . DPN A 1 4 ? 15.304 -1.754 5.608 1.000 10.424 0 4 DPN D CE1 1 ?
HETATM 79 C CE2 . DPN A 1 4 ? 17.463 -2.517 5.128 1.000 14.094 0 4 DPN D CE2 1 ?
HETATM 80 C CZ . DPN A 1 4 ? 16.161 -2.760 5.420 1.000 12.817 0 4 DPN D CZ 1 ?
HETATM 81 H H . DPN A 1 4 ? 17.810 3.622 4.319 1.000 6.369 0 4 DPN D H 1 c
HETATM 82 H HA . DPN A 1 4 ? 16.029 1.782 3.608 1.000 6.903 0 4 DPN D HA 1 c
HETATM 83 H HB2 . DPN A 1 4 ? 18.452 1.281 4.977 1.000 7.833 0 4 DPN D HB2 1 c
HETATM 84 H HB3 . DPN A 1 4 ? 17.125 1.784 5.687 1.000 7.788 0 4 DPN D HB3 1 c
HETATM 85 H HD1 . DPN A 1 4 ? 15.109 0.251 5.548 1.000 9.477 0 4 DPN D HD1 1 c
HETATM 86 H HD2 . DPN A 1 4 ? 18.798 -1.032 4.734 1.000 11.807 0 4 DPN D HD2 1 c
HETATM 87 H HE1 . DPN A 1 4 ? 14.402 -1.934 5.817 1.000 10.716 0 4 DPN D HE1 1 c
HETATM 88 H HE2 . DPN A 1 4 ? 18.065 -3.235 5.010 1.000 13.382 0 4 DPN D HE2 1 c
HETATM 89 H HZ . DPN A 1 4 ? 15.870 -3.649 5.549 1.000 12.427 0 4 DPN D HZ 1 c
ATOM 90 N N . PRO A 1 5 ? 16.824 0.512 1.599 1.000 6.527 0 5 PRO D N 1 ?
ATOM 91 C CA . PRO A 1 5 ? 17.402 -0.220 0.489 1.000 7.767 0 5 PRO D CA 1 ?
ATOM 92 C C . PRO A 1 5 ? 17.734 0.567 -0.741 1.000 6.870 0 5 PRO D C 1 ?
ATOM 93 O O . PRO A 1 5 ? 18.168 -0.045 -1.728 1.000 9.759 0 5 PRO D O 1 ?
ATOM 94 C CB . PRO A 1 5 ? 16.334 -1.228 0.131 1.000 11.523 0 5 PRO D CB 1 ?
ATOM 95 C CG . PRO A 1 5 ? 15.105 -0.750 0.692 1.000 11.463 0 5 PRO D CG 1 ?
ATOM 96 C CD . PRO A 1 5 ? 15.384 0.264 1.762 1.000 7.575 0 5 PRO D CD 1 ?
ATOM 97 H HA . PRO A 1 5 ? 18.207 -0.703 0.803 1.000 7.903 0 5 PRO D HA 1 c
ATOM 98 H HB2 . PRO A 1 5 ? 16.251 -1.318 -0.842 1.000 10.498 0 5 PRO D HB2 1 c
ATOM 99 H HB3 . PRO A 1 5 ? 16.557 -2.108 0.503 1.000 10.522 0 5 PRO D HB3 1 c
ATOM 100 H HG2 . PRO A 1 5 ? 14.557 -0.345 -0.011 1.000 10.437 0 5 PRO D HG2 1 c
ATOM 101 H HG3 . PRO A 1 5 ? 14.601 -1.499 1.070 1.000 10.437 0 5 PRO D HG3 1 c
ATOM 102 H HD2 . PRO A 1 5 ? 14.868 1.079 1.622 1.000 8.044 0 5 PRO D HD2 1 c
ATOM 103 H HD3 . PRO A 1 5 ? 15.186 -0.095 2.647 1.000 8.037 0 5 PRO D HD3 1 c
ATOM 104 N N . VAL A 1 6 ? 17.459 1.866 -0.799 1.000 6.164 0 6 VAL D N 1 ?
ATOM 105 C CA . VAL A 1 6 ? 17.684 2.615 -2.032 1.000 6.429 0 6 VAL D CA 1 ?
ATOM 106 C C . VAL A 1 6 ? 18.590 3.796 -1.791 1.000 5.921 0 6 VAL D C 1 ?
ATOM 107 O O . VAL A 1 6 ? 18.673 4.319 -0.669 1.000 8.002 0 6 VAL D O 1 ?
ATOM 108 C CB . VAL A 1 6 ? 16.372 3.082 -2.685 1.000 8.207 0 6 VAL D CB 1 ?
ATOM 109 C CG1 . VAL A 1 6 ? 15.610 1.874 -3.197 1.000 10.009 0 6 VAL D CG1 1 ?
ATOM 110 C CG2 . VAL A 1 6 ? 15.563 3.971 -1.755 1.000 9.139 0 6 VAL D CG2 1 ?
ATOM 111 H H . VAL A 1 6 ? 17.132 2.303 -0.066 1.000 6.426 0 6 VAL D H 1 c
ATOM 112 H HA . VAL A 1 6 ? 18.132 2.023 -2.661 1.000 6.599 0 6 VAL D HA 1 c
ATOM 113 H HB . VAL A 1 6 ? 16.619 3.628 -3.472 1.000 8.280 0 6 VAL D HB 1 c
ATOM 114 H HG11 . VAL A 1 6 ? 15.464 1.248 -2.467 1.000 9.401 0 6 VAL D HG11 1 c
ATOM 115 H HG12 . VAL A 1 6 ? 16.124 1.439 -3.899 1.000 9.429 0 6 VAL D HG12 1 c
ATOM 116 H HG13 . VAL A 1 6 ? 14.751 2.159 -3.555 1.000 9.429 0 6 VAL D HG13 1 c
ATOM 117 H HG21 . VAL A 1 6 ? 14.729 4.221 -2.190 1.000 8.840 0 6 VAL D HG21 1 c
ATOM 118 H HG22 . VAL A 1 6 ? 16.070 4.774 -1.546 1.000 8.825 0 6 VAL D HG22 1 c
ATOM 119 H HG23 . VAL A 1 6 ? 15.365 3.490 -0.933 1.000 8.810 0 6 VAL D HG23 1 c
HETATM 120 N N . ORN A 1 7 ? 19.222 4.233 -2.833 1.000 6.323 0 7 ORN D N 1 ?
HETATM 121 C CA . ORN A 1 7 ? 20.078 5.404 -2.860 1.000 6.844 0 7 ORN D CA 1 ?
HETATM 122 C CB . ORN A 1 7 ? 21.384 5.093 -3.578 1.000 9.235 0 7 ORN D CB 1 ?
HETATM 123 C CG . ORN A 1 7 ? 22.251 4.147 -2.790 1.000 13.233 0 7 ORN D CG 1 ?
HETATM 124 C CD . ORN A 1 7 ? 23.434 3.702 -3.616 1.000 20.872 0 7 ORN D CD 1 ?
HETATM 125 N NE . ORN A 1 7 ? 24.336 2.939 -2.748 1.000 30.170 0 7 ORN D NE 1 ?
HETATM 126 C C . ORN A 1 7 ? 19.371 6.495 -3.618 1.000 6.065 0 7 ORN D C 1 ?
HETATM 127 O O . ORN A 1 7 ? 18.841 6.251 -4.722 1.000 8.953 0 7 ORN D O 1 ?
HETATM 128 H H . ORN A 1 7 ? 19.120 3.770 -3.614 1.000 6.341 0 7 ORN D H 1 c
HETATM 129 H HA . ORN A 1 7 ? 20.262 5.698 -1.941 1.000 6.936 0 7 ORN D HA 1 c
HETATM 130 H HB2 . ORN A 1 7 ? 21.181 4.695 -4.450 1.000 9.415 0 7 ORN D HB2 1 c
HETATM 131 H HB3 . ORN A 1 7 ? 21.873 5.929 -3.728 1.000 9.361 0 7 ORN D HB3 1 c
HETATM 132 H HG2 . ORN A 1 7 ? 22.576 4.592 -1.978 1.000 13.534 0 7 ORN D HG2 1 c
HETATM 133 H HG3 . ORN A 1 7 ? 21.730 3.360 -2.525 1.000 13.489 0 7 ORN D HG3 1 c
HETATM 134 H HD2 . ORN A 1 7 ? 23.129 3.140 -4.357 1.000 20.509 0 7 ORN D HD2 1 c
HETATM 135 H HD3 . ORN A 1 7 ? 23.899 4.483 -3.978 1.000 20.509 0 7 ORN D HD3 1 c
HETATM 136 H HE1 . ORN A 1 7 ? 25.066 2.689 -3.192 1.000 26.886 0 7 ORN D HE1 1 c
HETATM 137 H HE2 . ORN A 1 7 ? 23.939 2.199 -2.453 1.000 26.780 0 7 ORN D HE2 1 c
ATOM 138 N N . LEU A 1 8 ? 19.387 7.695 -3.104 1.000 5.978 0 8 LEU D N 1 ?
ATOM 139 C CA . LEU A 1 8 ? 18.791 8.832 -3.785 1.000 6.376 0 8 LEU D CA 1 ?
ATOM 140 C C . LEU A 1 8 ? 19.699 10.014 -3.588 1.000 5.381 0 8 LEU D C 1 ?
ATOM 141 O O . LEU A 1 8 ? 20.007 10.410 -2.447 1.000 6.391 0 8 LEU D O 1 ?
ATOM 142 C CB . LEU A 1 8 ? 17.439 9.175 -3.200 1.000 8.326 0 8 LEU D CB 1 ?
ATOM 143 C CG . LEU A 1 8 ? 16.334 8.198 -3.531 1.000 12.379 0 8 LEU D CG 1 ?
ATOM 144 C CD1 . LEU A 1 8 ? 15.108 8.561 -2.714 1.000 18.467 0 8 LEU D CD1 1 ?
ATOM 145 C CD2 . LEU A 1 8 ? 15.999 8.204 -5.006 1.000 13.316 0 8 LEU D CD2 1 ?
ATOM 146 H H . LEU A 1 8 ? 19.782 7.828 -2.290 1.000 6.093 0 8 LEU D H 1 c
ATOM 147 H HA . LEU A 1 8 ? 18.708 8.634 -4.746 1.000 6.461 0 8 LEU D HA 1 c
ATOM 148 H HB2 . LEU A 1 8 ? 17.528 9.228 -2.228 1.000 8.663 0 8 LEU D HB2 1 c
ATOM 149 H HB3 . LEU A 1 8 ? 17.177 10.061 -3.522 1.000 8.600 0 8 LEU D HB3 1 c
ATOM 150 H HG . LEU A 1 8 ? 16.627 7.289 -3.275 1.000 12.506 0 8 LEU D HG 1 c
ATOM 151 H HD11 . LEU A 1 8 ? 14.392 7.926 -2.906 1.000 16.360 0 8 LEU D HD11 1 c
ATOM 152 H HD12 . LEU A 1 8 ? 14.816 9.463 -2.949 1.000 16.360 0 8 LEU D HD12 1 c
ATOM 153 H HD13 . LEU A 1 8 ? 15.328 8.527 -1.763 1.000 16.268 0 8 LEU D HD13 1 c
ATOM 154 H HD21 . LEU A 1 8 ? 16.681 7.711 -5.496 1.000 12.945 0 8 LEU D HD21 1 c
ATOM 155 H HD22 . LEU A 1 8 ? 15.968 9.121 -5.329 1.000 12.952 0 8 LEU D HD22 1 c
ATOM 156 H HD23 . LEU A 1 8 ? 15.133 7.782 -5.145 1.000 13.024 0 8 LEU D HD23 1 c
HETATM 157 N N . DPN A 1 9 ? 20.175 10.590 -4.682 1.000 5.862 0 9 DPN D N 1 ?
HETATM 158 C CA . DPN A 1 9 ? 21.233 11.585 -4.556 1.000 5.673 0 9 DPN D CA 1 ?
HETATM 159 C C . DPN A 1 9 ? 22.385 11.002 -3.810 1.000 5.481 0 9 DPN D C 1 ?
HETATM 160 O O . DPN A 1 9 ? 22.753 9.883 -4.122 1.000 6.844 0 9 DPN D O 1 ?
HETATM 161 C CB . DPN A 1 9 ? 21.616 12.088 -5.919 1.000 7.172 0 9 DPN D CB 1 ?
HETATM 162 C CG . DPN A 1 9 ? 22.575 13.222 -5.868 1.000 7.073 0 9 DPN D CG 1 ?
HETATM 163 C CD1 . DPN A 1 9 ? 23.913 13.006 -5.842 1.000 8.726 0 9 DPN D CD1 1 ?
HETATM 164 C CD2 . DPN A 1 9 ? 22.135 14.509 -5.745 1.000 8.266 0 9 DPN D CD2 1 ?
HETATM 165 C CE1 . DPN A 1 9 ? 24.796 14.071 -5.770 1.000 10.717 0 9 DPN D CE1 1 ?
HETATM 166 C CE2 . DPN A 1 9 ? 23.024 15.562 -5.625 1.000 9.523 0 9 DPN D CE2 1 ?
HETATM 167 C CZ . DPN A 1 9 ? 24.327 15.320 -5.627 1.000 10.690 0 9 DPN D CZ 1 ?
HETATM 168 H H . DPN A 1 9 ? 19.910 10.430 -5.539 1.000 5.751 0 9 DPN D H 1 c
HETATM 169 H HA . DPN A 1 9 ? 20.878 12.347 -4.034 1.000 5.931 0 9 DPN D HA 1 c
HETATM 170 H HB2 . DPN A 1 9 ? 22.015 11.351 -6.426 1.000 6.782 0 9 DPN D HB2 1 c
HETATM 171 H HB3 . DPN A 1 9 ? 20.805 12.375 -6.388 1.000 6.774 0 9 DPN D HB3 1 c
HETATM 172 H HD1 . DPN A 1 9 ? 24.245 12.126 -5.928 1.000 8.717 0 9 DPN D HD1 1 c
HETATM 173 H HD2 . DPN A 1 9 ? 21.207 14.679 -5.717 1.000 8.263 0 9 DPN D HD2 1 c
HETATM 174 H HE1 . DPN A 1 9 ? 25.724 13.912 -5.768 1.000 10.166 0 9 DPN D HE1 1 c
HETATM 175 H HE2 . DPN A 1 9 ? 22.705 16.447 -5.555 1.000 9.456 0 9 DPN D HE2 1 c
HETATM 176 H HZ . DPN A 1 9 ? 24.934 16.042 -5.582 1.000 10.352 0 9 DPN D HZ 1 c
ATOM 177 N N . PRO A 1 10 ? 22.964 11.667 -2.806 1.000 5.484 0 10 PRO D N 1 ?
ATOM 178 C CA . PRO A 1 10 ? 24.144 11.148 -2.147 1.000 5.931 0 10 PRO D CA 1 ?
ATOM 179 C C . PRO A 1 10 ? 23.817 10.348 -0.894 1.000 6.199 0 10 PRO D C 1 ?
ATOM 180 O O . PRO A 1 10 ? 24.760 10.050 -0.139 1.000 9.224 0 10 PRO D O 1 ?
ATOM 181 C CB . PRO A 1 10 ? 24.896 12.410 -1.811 1.000 7.261 0 10 PRO D CB 1 ?
ATOM 182 C CG . PRO A 1 10 ? 23.777 13.360 -1.421 1.000 7.732 0 10 PRO D CG 1 ?
ATOM 183 C CD . PRO A 1 10 ? 22.649 13.030 -2.366 1.000 6.495 0 10 PRO D CD 1 ?
ATOM 184 H HA . PRO A 1 10 ? 24.674 10.602 -2.780 1.000 6.114 0 10 PRO D HA 1 c
ATOM 185 H HB2 . PRO A 1 10 ? 25.519 12.271 -1.068 1.000 7.042 0 10 PRO D HB2 1 c
ATOM 186 H HB3 . PRO A 1 10 ? 25.391 12.747 -2.588 1.000 7.035 0 10 PRO D HB3 1 c
ATOM 187 H HG2 . PRO A 1 10 ? 23.506 13.216 -0.492 1.000 7.329 0 10 PRO D HG2 1 c
ATOM 188 H HG3 . PRO A 1 10 ? 24.058 14.291 -1.528 1.000 7.327 0 10 PRO D HG3 1 c
ATOM 189 H HD2 . PRO A 1 10 ? 21.788 13.060 -1.911 1.000 6.493 0 10 PRO D HD2 1 c
ATOM 190 H HD3 . PRO A 1 10 ? 22.632 13.647 -3.120 1.000 6.496 0 10 PRO D HD3 1 c
HETATM 191 C C . URE B 2 . ? -4.742 8.210 -7.162 0.500 6.771 0 101 URE D C 1 ?
HETATM 192 O O . URE B 2 . ? -5.356 9.278 -7.164 0.500 7.276 0 101 URE D O 1 ?
HETATM 193 N N1 . URE B 2 . ? -4.905 7.294 -8.125 0.500 8.414 0 101 URE D N1 1 ?
HETATM 194 N N2 . URE B 2 . ? -3.930 7.877 -6.153 0.500 8.450 0 101 URE D N2 1 ?
HETATM 195 H HN11 . URE B 2 . ? -5.452 7.465 -8.798 0.000 8.310 0 101 URE D HN11 1 c
HETATM 196 H HN12 . URE B 2 . ? -4.443 6.550 -8.103 0.000 8.310 0 101 URE D HN12 1 c
HETATM 197 H HN21 . URE B 2 . ? -3.798 8.438 -5.493 0.000 8.490 0 101 URE D HN21 1 c
HETATM 198 H HN22 . URE B 2 . ? -3.487 7.113 -6.192 0.000 8.490 0 101 URE D HN22 1 c
HETATM 199 O O . HOH C 3 . ? 25.574 7.980 1.425 1.000 12.164 0 201 HOH D O 1 ?
HETATM 200 O O . HOH C 3 . ? 19.125 -2.625 -1.902 1.000 12.770 0 202 HOH D O 1 ?
HETATM 201 O O . HOH C 3 . ? 17.852 4.839 -7.000 1.000 29.502 0 203 HOH D O 1 ?
HETATM 202 O O . HOH C 3 . ? 23.996 7.522 -2.789 1.000 24.505 0 204 HOH D O 1 ?
HETATM 203 O O . HOH C 3 . ? 22.069 0.690 -1.412 1.000 31.029 0 205 HOH D O 1 ?
HETATM 204 O O . HOH C 3 . ? -2.880 4.988 -7.163 0.500 13.010 0 206 HOH D O 1 ?
HETATM 205 O O . HOH C 3 . ? 20.820 0.000 -3.581 0.500 35.216 0 207 HOH D O 1 ?
HETATM 206 O O . HOH C 3 . ? 25.161 5.487 -0.148 1.000 33.601 0 208 HOH D O 1 ?
HETATM 207 O O . HOH C 3 . ? 21.471 -2.433 -0.120 0.500 20.939 0 209 HOH D O 1 ?
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