data_8HU5
#
_entry.id 8HU5
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.376
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8HU5 pdb_00008hu5 10.2210/pdb8hu5/pdb
WWPDB D_1300033721 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details '8HIS contains the same ligand and will be submitted to the same paper.'
_pdbx_database_related.db_id 8HIS
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 8HU5
_pdbx_database_status.recvd_initial_deposition_date 2022-12-22
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Aoyama, H.' 1 0000-0001-7915-8975
'Obika, H.' 2 0000-0002-6842-6812
'Yamaguchi, T.' 3 0000-0003-3180-0257
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_id_ASTM NARHAD
_citation.journal_id_CSD 0389
_citation.journal_id_ISSN 1362-4962
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 51
_citation.language ?
_citation.page_first 7749
_citation.page_last 7761
_citation.title
;Mechanism of the extremely high duplex-forming ability of oligonucleotides modified with N-tert-butylguanidine- or N-tert-butyl-N'- methylguanidine-bridged nucleic acids.
;
_citation.year 2023
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1093/nar/gkad608
_citation.pdbx_database_id_PubMed 37462081
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Yamaguchi, T.' 1 ?
primary 'Horie, N.' 2 ?
primary 'Aoyama, H.' 3 ?
primary 'Kumagai, S.' 4 ?
primary 'Obika, S.' 5 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 8HU5
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 42.494
_cell.length_a_esd ?
_cell.length_b 42.494
_cell.length_b_esd ?
_cell.length_c 24.315
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 8HU5
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*(LR6)P*GP*(BRU)P*AP*CP*AP*C)-3')
;
2630.686 1 ? ? ? ?
2 water nat water 18.015 50 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(LR6)(DG)(BRU)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GXGUACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 LR6 n
1 3 DG n
1 4 BRU n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 8
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 8HU5
_struct_ref.pdbx_db_accession 8HU5
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 8HU5
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 8HU5
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
LR6 'DNA linking' .
;[(1R,3R,4R,7S)-5-(N'-tert-butyl-N-methyl-carbamimidoyl)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-7-oxidanyl-2-oxa-5-azabicyclo[2.2.1]heptan-1-yl]methyl dihydrogen phosphate
;
? 'C17 H28 N5 O8 P' 461.407
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8HU5
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.11
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 41.69
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040M Sodium cacodylate trihydrate pH 6.0, 0.012M Spermine tetrahydrochloride, 0.012M Sodium chloride, 0.080M Potassium chloride
;
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.temp 293.15
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 90
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2019-06-26
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9199
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'SPRING-8 BEAMLINE BL44XU'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9199
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL44XU
_diffrn_source.pdbx_synchrotron_site SPring-8
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 8HU5
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 0.93
_reflns.d_resolution_low 21.1
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 27813
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 97.7
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 6.56
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 15.97
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.09
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.99
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_Rmerge_I_obs 0.083
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_CC_split_method ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
0.93 0.99 ? ? ? ? ? ? 3969 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.281 ? ? 1 1 0.9259999999999999 ? ? ? ? 0.237 ? ? ? ? ? ?
? ? ?
0.99 1.06 ? ? ? ? ? ? 4352 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.159 ? ? 2 1 0.988 ? ? ? ? 0.147 ? ? ? ? ? ?
? ? ?
1.06 1.14 ? ? ? ? ? ? 4016 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.106 ? ? 3 1 0.9940000000000001 ? ? ? ? 0.099 ? ? ? ? ? ?
? ? ?
1.14 1.25 ? ? ? ? ? ? 3685 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.08800000000000001 ? ? 4 1 0.996 ? ? ? ? 0.081 ? ? ? ? ? ?
? ? ?
1.25 1.4 ? ? ? ? ? ? 3349 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.086 ? ? 5 1 0.996 ? ? ? ? 0.08 ? ? ? ? ? ? ?
? ?
1.40 1.61 ? ? ? ? ? ? 2961 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.081 ? ? 6 1 0.997 ? ? ? ? 0.075 ? ? ? ? ? ?
? ? ?
1.61 1.97 ? ? ? ? ? ? 2493 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.07200000000000001 ? ? 7 1 0.997 ? ? ? ? 0.067 ? ? ? ? ? ?
? ? ?
1.97 2.77 ? ? ? ? ? ? 1931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.079 ? ? 8 1 0.992 ? ? ? ? 0.073 ? ? ? ? ? ?
? ? ?
2.77 10 ? ? ? ? ? ? 1057 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.115 ? ? 9 1 0.977 ? ? ? ?
0.10300000000000001 ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 8HU5
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 0.93
_refine.ls_d_res_low 21.10
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 27813
_refine.ls_number_reflns_R_free 2778
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 97.73
_refine.ls_percent_reflns_R_free 9.99
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1944
_refine.ls_R_factor_R_free 0.2134
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1923
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.41
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 22.27
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.11
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 0.93
_refine_hist.d_res_low 21.10
_refine_hist.number_atoms_solvent 51
_refine_hist.number_atoms_total 222
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 171
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.008 ? 191 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 2.399 ? 296 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 23.321 ? 85 ? f_dihedral_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.088 ? 31 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.017 ? 10 ? f_plane_restr ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
_refine_ls_shell.R_factor_R_free
'X-RAY DIFFRACTION' 0.93 0.95 . . 87 794 62.00 . . . . 0.3031 . . . . . . . . . . . 0.2761
'X-RAY DIFFRACTION' 0.95 0.96 . . 138 1241 95.00 . . . . 0.2928 . . . . . . . . . . . 0.3228
'X-RAY DIFFRACTION' 0.96 0.98 . . 135 1272 99.00 . . . . 0.2793 . . . . . . . . . . . 0.2963
'X-RAY DIFFRACTION' 0.98 1.00 . . 144 1263 100.00 . . . . 0.2508 . . . . . . . . . . . 0.2956
'X-RAY DIFFRACTION' 1.00 1.03 . . 144 1272 100.00 . . . . 0.2422 . . . . . . . . . . . 0.2460
'X-RAY DIFFRACTION' 1.03 1.05 . . 138 1293 100.00 . . . . 0.2468 . . . . . . . . . . . 0.3015
'X-RAY DIFFRACTION' 1.05 1.08 . . 142 1278 100.00 . . . . 0.2342 . . . . . . . . . . . 0.2676
'X-RAY DIFFRACTION' 1.08 1.10 . . 143 1275 100.00 . . . . 0.2303 . . . . . . . . . . . 0.2418
'X-RAY DIFFRACTION' 1.10 1.14 . . 141 1299 100.00 . . . . 0.2141 . . . . . . . . . . . 0.2669
'X-RAY DIFFRACTION' 1.14 1.17 . . 145 1265 100.00 . . . . 0.2084 . . . . . . . . . . . 0.2211
'X-RAY DIFFRACTION' 1.17 1.22 . . 140 1290 100.00 . . . . 0.2044 . . . . . . . . . . . 0.2337
'X-RAY DIFFRACTION' 1.22 1.26 . . 137 1274 100.00 . . . . 0.1945 . . . . . . . . . . . 0.1970
'X-RAY DIFFRACTION' 1.26 1.32 . . 148 1287 100.00 . . . . 0.1988 . . . . . . . . . . . 0.1972
'X-RAY DIFFRACTION' 1.32 1.39 . . 142 1262 100.00 . . . . 0.2036 . . . . . . . . . . . 0.2211
'X-RAY DIFFRACTION' 1.39 1.48 . . 143 1285 100.00 . . . . 0.1981 . . . . . . . . . . . 0.2298
'X-RAY DIFFRACTION' 1.48 1.59 . . 140 1283 100.00 . . . . 0.1851 . . . . . . . . . . . 0.2032
'X-RAY DIFFRACTION' 1.59 1.75 . . 146 1291 100.00 . . . . 0.1556 . . . . . . . . . . . 0.1800
'X-RAY DIFFRACTION' 1.75 2.01 . . 144 1275 100.00 . . . . 0.1712 . . . . . . . . . . . 0.1896
'X-RAY DIFFRACTION' 2.01 2.53 . . 136 1276 100.00 . . . . 0.1814 . . . . . . . . . . . 0.2162
'X-RAY DIFFRACTION' 2.53 10 . . 145 1260 98.00 . . . . 0.1846 . . . . . . . . . . . 0.1995
#
_struct.entry_id 8HU5
_struct.title 'Crystal structure of DNA octamer containing GuNA[Me,tBu]'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8HU5
_struct_keywords.text 'DNA, OLIGONUCLEOTIDE, MODIFIED BASE, Artificial nucleic acid'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A LR6 2 P ? ? A DG 1 A LR6 2 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale2 covale both ? A LR6 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A LR6 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.602 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DG 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.600 ? ?
covale4 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.598 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A BRU 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A BRU 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A BRU 4 N3 ? ? A DA 5 A BRU 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A BRU 4 O4 ? ? A DA 5 A BRU 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_atom_sites.entry_id 8HU5
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.023533
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023533
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041127
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 35.288 -1.844 11.452 1.00 11.70 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 35.609 -3.202 11.168 1.00 11.37 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 34.446 -3.905 10.488 1.00 10.61 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 33.284 -3.879 11.350 1.00 10.44 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 33.986 -3.282 9.184 1.00 9.23 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 34.740 -3.804 8.116 1.00 9.89 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 32.538 -3.739 9.115 1.00 9.34 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 32.118 -3.668 10.577 1.00 10.05 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 31.551 -2.380 10.927 1.00 9.62 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 32.112 -1.415 11.724 1.00 9.95 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 31.370 -0.352 11.843 1.00 10.27 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 30.256 -0.628 11.062 1.00 9.80 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 29.112 0.152 10.804 1.00 8.33 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 28.848 1.290 11.221 1.00 9.52 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 28.221 -0.499 9.957 1.00 9.35 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 28.408 -1.757 9.436 1.00 8.80 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 27.437 -2.216 8.633 1.00 10.35 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 29.474 -2.506 9.678 1.00 8.61 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 30.355 -1.873 10.494 1.00 8.73 ? 1 DG A C4 1
HETATM 20 C C2 . LR6 A 1 2 ? 29.583 0.822 7.180 1.00 8.15 ? 2 LR6 A C2 1
HETATM 21 C C4 . LR6 A 1 2 ? 30.907 2.029 8.723 1.00 8.62 ? 2 LR6 A C4 1
HETATM 22 C C5 . LR6 A 1 2 ? 31.979 1.030 8.588 1.00 8.17 ? 2 LR6 A C5 1
HETATM 23 C C6 . LR6 A 1 2 ? 31.747 -0.030 7.724 1.00 8.64 ? 2 LR6 A C6 1
HETATM 24 N N1 . LR6 A 1 2 ? 30.585 -0.137 7.043 1.00 7.41 ? 2 LR6 A N1 1
HETATM 25 N N3 . LR6 A 1 2 ? 29.779 1.854 8.014 1.00 8.66 ? 2 LR6 A N3 1
HETATM 26 C CD . LR6 A 1 2 ? 28.672 -2.098 3.518 1.00 9.83 ? 2 LR6 A CD 1
HETATM 27 C "C1'" . LR6 A 1 2 ? 30.275 -1.228 6.099 1.00 8.30 ? 2 LR6 A "C1'" 1
HETATM 28 C "C2'" . LR6 A 1 2 ? 30.482 -0.826 4.636 1.00 8.40 ? 2 LR6 A "C2'" 1
HETATM 29 C "C3'" . LR6 A 1 2 ? 31.974 -1.040 4.546 1.00 8.88 ? 2 LR6 A "C3'" 1
HETATM 30 C "C4'" . LR6 A 1 2 ? 31.897 -2.453 5.067 1.00 8.44 ? 2 LR6 A "C4'" 1
HETATM 31 C "C5'" . LR6 A 1 2 ? 33.212 -3.178 5.297 1.00 9.77 ? 2 LR6 A "C5'" 1
HETATM 32 C C5M . LR6 A 1 2 ? 33.258 1.179 9.368 1.00 10.58 ? 2 LR6 A C5M 1
HETATM 33 C "C6'" . LR6 A 1 2 ? 30.964 -3.052 4.045 1.00 9.36 ? 2 LR6 A "C6'" 1
HETATM 34 C "C7'" . LR6 A 1 2 ? 29.013 -3.788 1.680 1.00 13.70 ? 2 LR6 A "C7'" 1
HETATM 35 C "C8'" . LR6 A 1 2 ? 26.347 -1.151 3.880 1.00 11.96 ? 2 LR6 A "C8'" 1
HETATM 36 C "C9'" . LR6 A 1 2 ? 26.131 -0.738 2.424 1.00 14.74 ? 2 LR6 A "C9'" 1
HETATM 37 N "N2'" . LR6 A 1 2 ? 29.939 -2.004 3.952 1.00 9.03 ? 2 LR6 A "N2'" 1
HETATM 38 N "N3'" . LR6 A 1 2 ? 28.306 -2.897 2.592 1.00 12.05 ? 2 LR6 A "N3'" 1
HETATM 39 N "N4'" . LR6 A 1 2 ? 27.762 -1.363 4.183 1.00 10.25 ? 2 LR6 A "N4'" 1
HETATM 40 O O2 . LR6 A 1 2 ? 28.526 0.711 6.514 1.00 9.00 ? 2 LR6 A O2 1
HETATM 41 O "O3'" . LR6 A 1 2 ? 32.457 -1.055 3.210 1.00 9.77 ? 2 LR6 A "O3'" 1
HETATM 42 O O4 . LR6 A 1 2 ? 31.051 3.007 9.495 1.00 9.24 ? 2 LR6 A O4 1
HETATM 43 O "O4'" . LR6 A 1 2 ? 31.176 -2.320 6.291 1.00 8.55 ? 2 LR6 A "O4'" 1
HETATM 44 O "O5'" . LR6 A 1 2 ? 33.941 -2.358 6.200 1.00 9.54 ? 2 LR6 A "O5'" 1
HETATM 45 O OP1 . LR6 A 1 2 ? 36.104 -3.701 6.008 1.00 12.97 ? 2 LR6 A OP1 1
HETATM 46 O OP2 . LR6 A 1 2 ? 35.933 -1.621 7.462 1.00 13.63 ? 2 LR6 A OP2 1
HETATM 47 P P . LR6 A 1 2 ? 35.254 -2.857 6.932 1.00 10.60 ? 2 LR6 A P 1
HETATM 48 C "C10'" . LR6 A 1 2 ? 25.556 -2.411 4.214 1.00 15.63 ? 2 LR6 A "C10'" 1
HETATM 49 C "C11'" . LR6 A 1 2 ? 25.838 -0.031 4.777 1.00 13.79 ? 2 LR6 A "C11'" 1
ATOM 50 P P . DG A 1 3 ? 33.073 0.268 2.550 1.00 10.39 ? 3 DG A P 1
ATOM 51 O OP1 . DG A 1 3 ? 33.749 -0.198 1.317 1.00 13.44 ? 3 DG A OP1 1
ATOM 52 O OP2 . DG A 1 3 ? 33.811 1.018 3.586 1.00 12.00 ? 3 DG A OP2 1
ATOM 53 O "O5'" . DG A 1 3 ? 31.795 1.144 2.171 1.00 9.98 ? 3 DG A "O5'" 1
ATOM 54 C "C5'" . DG A 1 3 ? 30.821 0.655 1.249 1.00 10.03 ? 3 DG A "C5'" 1
ATOM 55 C "C4'" . DG A 1 3 ? 29.498 1.390 1.417 1.00 10.01 ? 3 DG A "C4'" 1
ATOM 56 O "O4'" . DG A 1 3 ? 29.110 1.368 2.810 1.00 10.67 ? 3 DG A "O4'" 1
ATOM 57 C "C3'" . DG A 1 3 ? 29.520 2.858 1.048 1.00 10.11 ? 3 DG A "C3'" 1
ATOM 58 O "O3'" . DG A 1 3 ? 29.236 2.989 -0.308 1.00 11.09 ? 3 DG A "O3'" 1
ATOM 59 C "C2'" . DG A 1 3 ? 28.382 3.415 1.889 1.00 10.99 ? 3 DG A "C2'" 1
ATOM 60 C "C1'" . DG A 1 3 ? 28.520 2.601 3.159 1.00 10.30 ? 3 DG A "C1'" 1
ATOM 61 N N9 . DG A 1 3 ? 29.319 3.245 4.213 1.00 9.69 ? 3 DG A N9 1
ATOM 62 C C8 . DG A 1 3 ? 30.551 2.864 4.703 1.00 9.89 ? 3 DG A C8 1
ATOM 63 N N7 . DG A 1 3 ? 30.988 3.635 5.668 1.00 8.94 ? 3 DG A N7 1
ATOM 64 C C5 . DG A 1 3 ? 29.981 4.577 5.824 1.00 8.36 ? 3 DG A C5 1
ATOM 65 C C6 . DG A 1 3 ? 29.868 5.668 6.723 1.00 8.23 ? 3 DG A C6 1
ATOM 66 O O6 . DG A 1 3 ? 30.659 6.033 7.606 1.00 8.93 ? 3 DG A O6 1
ATOM 67 N N1 . DG A 1 3 ? 28.677 6.374 6.524 1.00 8.20 ? 3 DG A N1 1
ATOM 68 C C2 . DG A 1 3 ? 27.714 6.056 5.588 1.00 8.67 ? 3 DG A C2 1
ATOM 69 N N2 . DG A 1 3 ? 26.633 6.854 5.537 1.00 9.16 ? 3 DG A N2 1
ATOM 70 N N3 . DG A 1 3 ? 27.808 5.037 4.757 1.00 9.64 ? 3 DG A N3 1
ATOM 71 C C4 . DG A 1 3 ? 28.956 4.344 4.928 1.00 9.88 ? 3 DG A C4 1
HETATM 72 N N1 . BRU A 1 4 ? 28.310 8.011 2.629 1.00 8.33 ? 4 BRU A N1 1
HETATM 73 C C2 . BRU A 1 4 ? 28.537 8.932 3.659 1.00 8.23 ? 4 BRU A C2 1
HETATM 74 N N3 . BRU A 1 4 ? 29.656 8.838 4.400 1.00 7.63 ? 4 BRU A N3 1
HETATM 75 C C4 . BRU A 1 4 ? 30.615 7.919 4.206 1.00 8.00 ? 4 BRU A C4 1
HETATM 76 C C5 . BRU A 1 4 ? 30.382 6.975 3.113 1.00 9.38 ? 4 BRU A C5 1
HETATM 77 C C6 . BRU A 1 4 ? 29.223 7.062 2.366 1.00 9.21 ? 4 BRU A C6 1
HETATM 78 O O2 . BRU A 1 4 ? 27.706 9.842 3.861 1.00 9.11 ? 4 BRU A O2 1
HETATM 79 O O4 . BRU A 1 4 ? 31.639 7.842 4.931 1.00 8.38 ? 4 BRU A O4 1
HETATM 80 BR BR . BRU A 1 4 ? 31.684 5.689 2.746 0.74 11.04 ? 4 BRU A BR 1
HETATM 81 C "C1'" . BRU A 1 4 ? 27.057 8.111 1.874 1.00 9.53 ? 4 BRU A "C1'" 1
HETATM 82 C "C2'" . BRU A 1 4 ? 27.177 9.052 0.701 1.00 8.99 ? 4 BRU A "C2'" 1
HETATM 83 C "C3'" . BRU A 1 4 ? 27.554 8.074 -0.382 1.00 9.37 ? 4 BRU A "C3'" 1
HETATM 84 C "C4'" . BRU A 1 4 ? 26.697 6.863 -0.052 1.00 9.71 ? 4 BRU A "C4'" 1
HETATM 85 O "O3'" . BRU A 1 4 ? 27.299 8.550 -1.696 1.00 10.18 ? 4 BRU A "O3'" 1
HETATM 86 O "O4'" . BRU A 1 4 ? 26.701 6.810 1.378 1.00 9.27 ? 4 BRU A "O4'" 1
HETATM 87 C "C5'" . BRU A 1 4 ? 27.226 5.573 -0.651 1.00 10.14 ? 4 BRU A "C5'" 1
HETATM 88 O "O5'" . BRU A 1 4 ? 28.605 5.453 -0.325 1.00 10.65 ? 4 BRU A "O5'" 1
HETATM 89 P P . BRU A 1 4 ? 29.528 4.370 -1.061 1.00 11.12 ? 4 BRU A P 1
HETATM 90 O OP1 . BRU A 1 4 ? 29.012 4.182 -2.465 1.00 14.16 ? 4 BRU A OP1 1
HETATM 91 O OP2 . BRU A 1 4 ? 30.974 4.741 -0.910 1.00 13.64 ? 4 BRU A OP2 1
ATOM 92 P P . DA A 1 5 ? 28.264 9.644 -2.348 1.00 11.00 ? 5 DA A P 1
ATOM 93 O OP1 . DA A 1 5 ? 27.934 9.695 -3.794 1.00 15.59 ? 5 DA A OP1 1
ATOM 94 O OP2 . DA A 1 5 ? 29.659 9.412 -1.934 1.00 14.35 ? 5 DA A OP2 1
ATOM 95 O "O5'" . DA A 1 5 ? 27.728 11.002 -1.680 1.00 9.82 ? 5 DA A "O5'" 1
ATOM 96 C "C5'" . DA A 1 5 ? 28.569 12.142 -1.548 1.00 9.62 ? 5 DA A "C5'" 1
ATOM 97 C "C4'" . DA A 1 5 ? 28.042 13.057 -0.458 1.00 9.27 ? 5 DA A "C4'" 1
ATOM 98 O "O4'" . DA A 1 5 ? 27.894 12.297 0.766 1.00 8.59 ? 5 DA A "O4'" 1
ATOM 99 C "C3'" . DA A 1 5 ? 28.949 14.225 -0.100 1.00 9.46 ? 5 DA A "C3'" 1
ATOM 100 O "O3'" . DA A 1 5 ? 28.622 15.354 -0.899 1.00 10.42 ? 5 DA A "O3'" 1
ATOM 101 C "C2'" . DA A 1 5 ? 28.622 14.462 1.364 1.00 8.92 ? 5 DA A "C2'" 1
ATOM 102 C "C1'" . DA A 1 5 ? 28.430 13.034 1.844 1.00 8.16 ? 5 DA A "C1'" 1
ATOM 103 N N9 . DA A 1 5 ? 29.658 12.360 2.290 1.00 8.09 ? 5 DA A N9 1
ATOM 104 C C8 . DA A 1 5 ? 30.284 11.292 1.689 1.00 8.11 ? 5 DA A C8 1
ATOM 105 N N7 . DA A 1 5 ? 31.324 10.842 2.349 1.00 7.98 ? 5 DA A N7 1
ATOM 106 C C5 . DA A 1 5 ? 31.382 11.663 3.464 1.00 7.04 ? 5 DA A C5 1
ATOM 107 C C6 . DA A 1 5 ? 32.253 11.698 4.560 1.00 7.19 ? 5 DA A C6 1
ATOM 108 N N6 . DA A 1 5 ? 33.271 10.846 4.697 1.00 7.65 ? 5 DA A N6 1
ATOM 109 N N1 . DA A 1 5 ? 32.036 12.633 5.516 1.00 7.15 ? 5 DA A N1 1
ATOM 110 C C2 . DA A 1 5 ? 31.011 13.482 5.361 1.00 7.66 ? 5 DA A C2 1
ATOM 111 N N3 . DA A 1 5 ? 30.117 13.538 4.371 1.00 7.23 ? 5 DA A N3 1
ATOM 112 C C4 . DA A 1 5 ? 30.360 12.598 3.447 1.00 7.25 ? 5 DA A C4 1
ATOM 113 P P . DC A 1 6 ? 29.786 16.276 -1.480 1.00 11.18 ? 6 DC A P 1
ATOM 114 O OP1 . DC A 1 6 ? 29.120 17.296 -2.323 1.00 13.33 ? 6 DC A OP1 1
ATOM 115 O OP2 . DC A 1 6 ? 30.836 15.404 -2.039 1.00 13.07 ? 6 DC A OP2 1
ATOM 116 O "O5'" . DC A 1 6 ? 30.418 16.984 -0.198 1.00 10.49 ? 6 DC A "O5'" 1
ATOM 117 C "C5'" . DC A 1 6 ? 29.684 17.957 0.493 1.00 11.47 ? 6 DC A "C5'" 1
ATOM 118 C "C4'" . DC A 1 6 ? 30.321 18.257 1.829 1.00 10.99 ? 6 DC A "C4'" 1
ATOM 119 O "O4'" . DC A 1 6 ? 30.317 17.059 2.648 1.00 9.94 ? 6 DC A "O4'" 1
ATOM 120 C "C3'" . DC A 1 6 ? 31.782 18.654 1.785 1.00 9.87 ? 6 DC A "C3'" 1
ATOM 121 O "O3'" . DC A 1 6 ? 31.916 20.017 1.429 1.00 10.82 ? 6 DC A "O3'" 1
ATOM 122 C "C2'" . DC A 1 6 ? 32.167 18.401 3.235 1.00 9.34 ? 6 DC A "C2'" 1
ATOM 123 C "C1'" . DC A 1 6 ? 31.474 17.065 3.464 1.00 8.78 ? 6 DC A "C1'" 1
ATOM 124 N N1 . DC A 1 6 ? 32.340 15.900 3.108 1.00 8.29 ? 6 DC A N1 1
ATOM 125 C C2 . DC A 1 6 ? 33.296 15.484 4.022 1.00 8.50 ? 6 DC A C2 1
ATOM 126 O O2 . DC A 1 6 ? 33.403 16.097 5.083 1.00 9.09 ? 6 DC A O2 1
ATOM 127 N N3 . DC A 1 6 ? 34.076 14.418 3.723 1.00 7.73 ? 6 DC A N3 1
ATOM 128 C C4 . DC A 1 6 ? 33.935 13.790 2.557 1.00 7.87 ? 6 DC A C4 1
ATOM 129 N N4 . DC A 1 6 ? 34.731 12.738 2.310 1.00 8.97 ? 6 DC A N4 1
ATOM 130 C C5 . DC A 1 6 ? 32.968 14.209 1.598 1.00 7.98 ? 6 DC A C5 1
ATOM 131 C C6 . DC A 1 6 ? 32.195 15.255 1.914 1.00 8.78 ? 6 DC A C6 1
ATOM 132 P P . DA A 1 7 ? 33.255 20.560 0.707 1.00 10.73 ? 7 DA A P 1
ATOM 133 O OP1 . DA A 1 7 ? 32.987 21.959 0.325 1.00 12.65 ? 7 DA A OP1 1
ATOM 134 O OP2 . DA A 1 7 ? 33.686 19.588 -0.321 1.00 13.18 ? 7 DA A OP2 1
ATOM 135 O "O5'" . DA A 1 7 ? 34.339 20.549 1.872 1.00 9.62 ? 7 DA A "O5'" 1
ATOM 136 C "C5'" . DA A 1 7 ? 34.197 21.419 2.983 1.00 9.89 ? 7 DA A "C5'" 1
ATOM 137 C "C4'" . DA A 1 7 ? 35.287 21.149 3.993 1.00 8.93 ? 7 DA A "C4'" 1
ATOM 138 O "O4'" . DA A 1 7 ? 35.169 19.788 4.465 1.00 8.83 ? 7 DA A "O4'" 1
ATOM 139 C "C3'" . DA A 1 7 ? 36.705 21.249 3.450 1.00 9.17 ? 7 DA A "C3'" 1
ATOM 140 O "O3'" . DA A 1 7 ? 37.152 22.582 3.528 1.00 9.65 ? 7 DA A "O3'" 1
ATOM 141 C "C2'" . DA A 1 7 ? 37.472 20.364 4.410 1.00 9.07 ? 7 DA A "C2'" 1
ATOM 142 C "C1'" . DA A 1 7 ? 36.462 19.253 4.665 1.00 8.20 ? 7 DA A "C1'" 1
ATOM 143 N N9 . DA A 1 7 ? 36.612 18.088 3.812 1.00 8.14 ? 7 DA A N9 1
ATOM 144 C C8 . DA A 1 7 ? 35.846 17.746 2.734 1.00 8.34 ? 7 DA A C8 1
ATOM 145 N N7 . DA A 1 7 ? 36.172 16.588 2.204 1.00 8.32 ? 7 DA A N7 1
ATOM 146 C C5 . DA A 1 7 ? 37.217 16.140 2.996 1.00 8.09 ? 7 DA A C5 1
ATOM 147 C C6 . DA A 1 7 ? 38.003 14.968 2.968 1.00 8.08 ? 7 DA A C6 1
ATOM 148 N N6 . DA A 1 7 ? 37.847 13.987 2.070 1.00 8.88 ? 7 DA A N6 1
ATOM 149 N N1 . DA A 1 7 ? 38.957 14.839 3.912 1.00 8.44 ? 7 DA A N1 1
ATOM 150 C C2 . DA A 1 7 ? 39.120 15.812 4.813 1.00 9.19 ? 7 DA A C2 1
ATOM 151 N N3 . DA A 1 7 ? 38.450 16.957 4.938 1.00 8.38 ? 7 DA A N3 1
ATOM 152 C C4 . DA A 1 7 ? 37.493 17.051 3.997 1.00 7.98 ? 7 DA A C4 1
ATOM 153 P P . DC A 1 8 ? 38.286 23.126 2.535 1.00 10.29 ? 8 DC A P 1
ATOM 154 O OP1 . DC A 1 8 ? 38.343 24.579 2.742 1.00 11.11 ? 8 DC A OP1 1
ATOM 155 O OP2 . DC A 1 8 ? 38.001 22.601 1.173 1.00 12.61 ? 8 DC A OP2 1
ATOM 156 O "O5'" . DC A 1 8 ? 39.642 22.452 3.040 1.00 11.13 ? 8 DC A "O5'" 1
ATOM 157 C "C5'" . DC A 1 8 ? 40.258 22.917 4.232 1.00 13.00 ? 8 DC A "C5'" 1
ATOM 158 C "C4'" . DC A 1 8 ? 41.532 22.145 4.524 1.00 12.86 ? 8 DC A "C4'" 1
ATOM 159 O "O4'" . DC A 1 8 ? 41.204 20.769 4.841 1.00 11.42 ? 8 DC A "O4'" 1
ATOM 160 C "C3'" . DC A 1 8 ? 42.510 22.053 3.365 1.00 13.94 ? 8 DC A "C3'" 1
ATOM 161 O "O3'" . DC A 1 8 ? 43.344 23.198 3.337 1.00 17.96 ? 8 DC A "O3'" 1
ATOM 162 C "C2'" . DC A 1 8 ? 43.298 20.799 3.720 1.00 15.17 ? 8 DC A "C2'" 1
ATOM 163 C "C1'" . DC A 1 8 ? 42.218 19.912 4.344 1.00 11.75 ? 8 DC A "C1'" 1
ATOM 164 N N1 . DC A 1 8 ? 41.614 18.939 3.389 1.00 10.50 ? 8 DC A N1 1
ATOM 165 C C2 . DC A 1 8 ? 42.163 17.667 3.293 1.00 9.71 ? 8 DC A C2 1
ATOM 166 O O2 . DC A 1 8 ? 43.137 17.391 4.003 1.00 10.80 ? 8 DC A O2 1
ATOM 167 N N3 . DC A 1 8 ? 41.612 16.772 2.436 1.00 9.54 ? 8 DC A N3 1
ATOM 168 C C4 . DC A 1 8 ? 40.567 17.121 1.683 1.00 9.55 ? 8 DC A C4 1
ATOM 169 N N4 . DC A 1 8 ? 40.064 16.209 0.848 1.00 10.10 ? 8 DC A N4 1
ATOM 170 C C5 . DC A 1 8 ? 39.996 18.428 1.755 1.00 9.92 ? 8 DC A C5 1
ATOM 171 C C6 . DC A 1 8 ? 40.545 19.295 2.617 1.00 10.33 ? 8 DC A C6 1
HETATM 172 O O . HOH B 2 . ? 36.637 22.604 -0.758 1.00 30.28 ? 101 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 36.378 -3.734 3.553 1.00 34.03 ? 102 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 26.418 11.404 -4.883 1.00 28.78 ? 103 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 36.822 -0.607 9.624 1.00 20.27 ? 104 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 32.082 13.158 -1.637 1.00 20.88 ? 105 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 36.210 19.502 -1.071 1.00 25.43 ? 106 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 34.050 6.801 5.219 1.00 20.67 ? 107 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 33.299 3.793 -0.072 1.00 21.12 ? 108 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 35.279 -1.561 14.086 1.00 21.75 ? 109 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 39.462 26.095 0.873 1.00 27.87 ? 110 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 31.674 10.716 -3.126 1.00 30.76 ? 111 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 34.954 23.771 0.096 1.00 21.43 ? 112 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 34.053 1.237 -0.946 1.00 25.55 ? 113 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 33.203 17.183 -1.476 1.00 31.81 ? 114 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 25.461 4.235 3.645 1.00 22.32 ? 115 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 35.772 15.415 -0.219 1.00 20.66 ? 116 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 38.466 -4.718 6.933 1.00 15.70 ? 117 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 38.313 25.800 5.204 1.00 15.43 ? 118 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 38.165 20.230 -0.208 1.00 34.09 ? 119 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 33.529 3.722 6.713 1.00 21.73 ? 120 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 34.777 0.919 6.177 1.00 20.05 ? 121 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 33.005 5.303 8.892 1.00 16.05 ? 122 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 31.456 7.583 -0.826 1.00 16.28 ? 123 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 34.093 3.630 2.602 1.00 18.48 ? 124 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 32.992 9.015 1.015 1.00 12.99 ? 125 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 32.557 1.698 13.380 1.00 19.35 ? 126 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 27.855 15.193 4.748 1.00 9.13 ? 127 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 39.995 23.627 -0.573 1.00 23.83 ? 128 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 30.180 3.205 12.854 1.00 15.61 ? 129 HOH A O 1
HETATM 201 O O . HOH B 2 . ? 39.407 18.973 6.736 1.00 21.07 ? 130 HOH A O 1
HETATM 202 O O . HOH B 2 . ? 32.492 -2.544 0.234 1.00 25.63 ? 131 HOH A O 1
HETATM 203 O O . HOH B 2 . ? 45.873 17.895 4.790 1.00 16.85 ? 132 HOH A O 1
HETATM 204 O O . HOH B 2 . ? 42.110 24.658 1.155 1.00 24.14 ? 133 HOH A O 1
HETATM 205 O O . HOH B 2 . ? 34.354 11.113 -0.100 1.00 22.99 ? 134 HOH A O 1
HETATM 206 O O . HOH B 2 . ? 26.626 18.509 -1.364 1.00 23.58 ? 135 HOH A O 1
HETATM 207 O O . HOH B 2 . ? 25.929 -4.347 1.641 1.00 17.15 ? 136 HOH A O 1
HETATM 208 O O . HOH B 2 . ? 30.915 23.082 2.111 1.00 22.59 ? 137 HOH A O 1
HETATM 209 O O . HOH B 2 . ? 34.514 8.646 3.047 1.00 17.90 ? 138 HOH A O 1
HETATM 210 O O . HOH B 2 . ? 38.513 -0.900 6.035 1.00 34.63 ? 139 HOH A O 1
HETATM 211 O O . HOH B 2 . ? 30.238 14.387 -4.867 1.00 33.35 ? 140 HOH A O 1
HETATM 212 O O . HOH B 2 . ? 32.593 22.830 -2.655 1.00 30.71 ? 141 HOH A O 1
HETATM 213 O O . HOH B 2 . ? 32.305 5.132 11.484 1.00 27.64 ? 142 HOH A O 1
HETATM 214 O O . HOH B 2 . ? 26.875 17.439 3.440 1.00 14.16 ? 143 HOH A O 1
HETATM 215 O O . HOH B 2 . ? 35.176 4.558 5.014 1.00 31.94 ? 144 HOH A O 1
HETATM 216 O O . HOH B 2 . ? 40.017 -2.443 7.159 1.00 33.66 ? 145 HOH A O 1
HETATM 217 O O . HOH B 2 . ? 34.818 -4.862 2.205 1.00 32.63 ? 146 HOH A O 1
HETATM 218 O O . HOH B 2 . ? 31.569 25.815 1.430 1.00 39.14 ? 147 HOH A O 1
HETATM 219 O O . HOH B 2 . ? 36.608 2.166 10.561 1.00 29.80 ? 148 HOH A O 1
HETATM 220 O O . HOH B 2 . ? 44.150 26.012 0.102 1.00 25.82 ? 149 HOH A O 1
HETATM 221 O O . HOH B 2 . ? 34.997 2.421 12.696 1.00 37.11 ? 150 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 O "O5'" . DG A 1 ? 0.1574 0.1194 0.1677 0.0159 -0.0401 -0.0007 1 DG A "O5'"
2 C "C5'" . DG A 1 ? 0.1514 0.1082 0.1723 0.0193 -0.0461 -0.0018 1 DG A "C5'"
3 C "C4'" . DG A 1 ? 0.1449 0.0967 0.1617 0.0191 -0.0450 -0.0031 1 DG A "C4'"
4 O "O4'" . DG A 1 ? 0.1476 0.0957 0.1535 0.0131 -0.0460 0.0033 1 DG A "O4'"
5 C "C3'" . DG A 1 ? 0.1273 0.0835 0.1399 0.0207 -0.0370 -0.0089 1 DG A "C3'"
6 O "O3'" . DG A 1 ? 0.1332 0.0891 0.1537 0.0257 -0.0352 -0.0163 1 DG A "O3'"
7 C "C2'" . DG A 1 ? 0.1326 0.0836 0.1387 0.0174 -0.0384 -0.0061 1 DG A "C2'"
8 C "C1'" . DG A 1 ? 0.1437 0.0928 0.1452 0.0122 -0.0411 0.0016 1 DG A "C1'"
9 N N9 . DG A 1 ? 0.1389 0.0936 0.1331 0.0090 -0.0346 0.0032 1 DG A N9
10 C C8 . DG A 1 ? 0.1433 0.1015 0.1333 0.0073 -0.0322 0.0045 1 DG A C8
11 N N7 . DG A 1 ? 0.1476 0.1096 0.1329 0.0048 -0.0256 0.0048 1 DG A N7
12 C C5 . DG A 1 ? 0.1409 0.1026 0.1288 0.0050 -0.0243 0.0044 1 DG A C5
13 C C6 . DG A 1 ? 0.1209 0.0859 0.1098 0.0033 -0.0190 0.0049 1 DG A C6
14 O O6 . DG A 1 ? 0.1350 0.1038 0.1229 0.0016 -0.0131 0.0050 1 DG A O6
15 N N1 . DG A 1 ? 0.1329 0.0960 0.1263 0.0035 -0.0217 0.0051 1 DG A N1
16 C C2 . DG A 1 ? 0.1274 0.0851 0.1220 0.0051 -0.0279 0.0041 1 DG A C2
17 N N2 . DG A 1 ? 0.1467 0.1022 0.1445 0.0043 -0.0307 0.0042 1 DG A N2
18 N N3 . DG A 1 ? 0.1263 0.0804 0.1207 0.0073 -0.0319 0.0028 1 DG A N3
19 C C4 . DG A 1 ? 0.1277 0.0845 0.1195 0.0072 -0.0300 0.0035 1 DG A C4
20 C C2 . LR6 A 2 ? 0.1168 0.0859 0.1069 0.0106 -0.0195 -0.0041 2 LR6 A C2
21 C C4 . LR6 A 2 ? 0.1209 0.0958 0.1107 0.0106 -0.0142 -0.0035 2 LR6 A C4
22 C C5 . LR6 A 2 ? 0.1153 0.0881 0.1069 0.0134 -0.0178 -0.0061 2 LR6 A C5
23 C C6 . LR6 A 2 ? 0.1225 0.0909 0.1148 0.0150 -0.0209 -0.0085 2 LR6 A C6
24 N N1 . LR6 A 2 ? 0.1086 0.0747 0.0985 0.0133 -0.0219 -0.0076 2 LR6 A N1
25 N N3 . LR6 A 2 ? 0.1216 0.0951 0.1124 0.0097 -0.0152 -0.0025 2 LR6 A N3
26 C CD . LR6 A 2 ? 0.1498 0.0977 0.1261 0.0103 -0.0336 -0.0148 2 LR6 A CD
27 C "C1'" . LR6 A 2 ? 0.1223 0.0822 0.1109 0.0140 -0.0259 -0.0106 2 LR6 A "C1'"
28 C "C2'" . LR6 A 2 ? 0.1260 0.0856 0.1074 0.0144 -0.0237 -0.0152 2 LR6 A "C2'"
29 C "C3'" . LR6 A 2 ? 0.1308 0.0921 0.1145 0.0182 -0.0200 -0.0207 2 LR6 A "C3'"
30 C "C4'" . LR6 A 2 ? 0.1252 0.0802 0.1151 0.0195 -0.0256 -0.0211 2 LR6 A "C4'"
31 C "C5'" . LR6 A 2 ? 0.1391 0.0935 0.1384 0.0238 -0.0253 -0.0255 2 LR6 A "C5'"
32 C C5M . LR6 A 2 ? 0.1443 0.1191 0.1385 0.0142 -0.0187 -0.0063 2 LR6 A C5M
33 C "C6'" . LR6 A 2 ? 0.1417 0.0894 0.1245 0.0175 -0.0288 -0.0232 2 LR6 A "C6'"
34 C "C7'" . LR6 A 2 ? 0.2086 0.1408 0.1712 0.0104 -0.0377 -0.0268 2 LR6 A "C7'"
35 C "C8'" . LR6 A 2 ? 0.1720 0.1242 0.1582 0.0043 -0.0383 -0.0034 2 LR6 A "C8'"
36 C "C9'" . LR6 A 2 ? 0.2116 0.1604 0.1881 0.0022 -0.0418 -0.0047 2 LR6 A "C9'"
37 N "N2'" . LR6 A 2 ? 0.1377 0.0890 0.1163 0.0138 -0.0288 -0.0178 2 LR6 A "N2'"
38 N "N3'" . LR6 A 2 ? 0.1825 0.1225 0.1528 0.0089 -0.0381 -0.0182 2 LR6 A "N3'"
39 N "N4'" . LR6 A 2 ? 0.1514 0.1042 0.1338 0.0080 -0.0337 -0.0082 2 LR6 A "N4'"
40 O O2 . LR6 A 2 ? 0.1279 0.0952 0.1188 0.0090 -0.0219 -0.0027 2 LR6 A O2
41 O "O3'" . LR6 A 2 ? 0.1451 0.1046 0.1215 0.0187 -0.0164 -0.0271 2 LR6 A "O3'"
42 O O4 . LR6 A 2 ? 0.1282 0.1058 0.1170 0.0089 -0.0106 -0.0024 2 LR6 A O4
43 O "O4'" . LR6 A 2 ? 0.1254 0.0813 0.1180 0.0169 -0.0284 -0.0138 2 LR6 A "O4'"
44 O "O5'" . LR6 A 2 ? 0.1322 0.0938 0.1365 0.0242 -0.0236 -0.0222 2 LR6 A "O5'"
45 O OP1 . LR6 A 2 ? 0.1683 0.1290 0.1956 0.0323 -0.0237 -0.0313 2 LR6 A OP1
46 O OP2 . LR6 A 2 ? 0.1759 0.1470 0.1951 0.0267 -0.0230 -0.0205 2 LR6 A OP2
47 P P . LR6 A 2 ? 0.1406 0.1035 0.1587 0.0276 -0.0261 -0.0228 2 LR6 A P
48 C "C10'" . LR6 A 2 ? 0.2184 0.1652 0.2103 0.0025 -0.0439 -0.0018 2 LR6 A "C10'"
49 C "C11'" . LR6 A 2 ? 0.1894 0.1494 0.1850 0.0035 -0.0338 0.0017 2 LR6 A "C11'"
50 P P . DG A 3 ? 0.1528 0.1185 0.1233 0.0175 -0.0095 -0.0279 3 DG A P
51 O OP1 . DG A 3 ? 0.1953 0.1572 0.1581 0.0179 -0.0046 -0.0360 3 DG A OP1
52 O OP2 . DG A 3 ? 0.1675 0.1410 0.1474 0.0191 -0.0070 -0.0250 3 DG A OP2
53 O "O5'" . DG A 3 ? 0.1506 0.1154 0.1131 0.0131 -0.0127 -0.0219 3 DG A "O5'"
54 C "C5'" . DG A 3 ? 0.1569 0.1140 0.1100 0.0099 -0.0179 -0.0220 3 DG A "C5'"
55 C "C4'" . DG A 3 ? 0.1555 0.1136 0.1113 0.0067 -0.0232 -0.0142 3 DG A "C4'"
56 O "O4'" . DG A 3 ? 0.1580 0.1203 0.1272 0.0083 -0.0235 -0.0103 3 DG A "O4'"
57 C "C3'" . DG A 3 ? 0.1562 0.1185 0.1093 0.0046 -0.0210 -0.0102 3 DG A "C3'"
58 O "O3'" . DG A 3 ? 0.1756 0.1317 0.1141 0.0003 -0.0244 -0.0102 3 DG A "O3'"
59 C "C2'" . DG A 3 ? 0.1619 0.1275 0.1281 0.0040 -0.0243 -0.0035 3 DG A "C2'"
60 C "C1'" . DG A 3 ? 0.1497 0.1170 0.1247 0.0068 -0.0226 -0.0048 3 DG A "C1'"
61 N N9 . DG A 3 ? 0.1382 0.1115 0.1184 0.0089 -0.0167 -0.0050 3 DG A N9
62 C C8 . DG A 3 ? 0.1403 0.1151 0.1203 0.0115 -0.0135 -0.0087 3 DG A C8
63 N N7 . DG A 3 ? 0.1253 0.1047 0.1096 0.0119 -0.0102 -0.0073 3 DG A N7
64 C C5 . DG A 3 ? 0.1164 0.0971 0.1040 0.0098 -0.0096 -0.0034 3 DG A C5
65 C C6 . DG A 3 ? 0.1120 0.0961 0.1045 0.0090 -0.0057 -0.0016 3 DG A C6
66 O O6 . DG A 3 ? 0.1204 0.1064 0.1126 0.0092 -0.0028 -0.0029 3 DG A O6
67 N N1 . DG A 3 ? 0.1094 0.0938 0.1085 0.0075 -0.0060 0.0016 3 DG A N1
68 C C2 . DG A 3 ? 0.1154 0.0975 0.1164 0.0064 -0.0111 0.0041 3 DG A C2
69 N N2 . DG A 3 ? 0.1176 0.1008 0.1297 0.0052 -0.0118 0.0077 3 DG A N2
70 N N3 . DG A 3 ? 0.1315 0.1097 0.1251 0.0063 -0.0157 0.0027 3 DG A N3
71 C C4 . DG A 3 ? 0.1369 0.1145 0.1239 0.0082 -0.0139 -0.0015 3 DG A C4
72 N N1 . BRU A 4 ? 0.1170 0.0962 0.1035 0.0025 -0.0163 0.0085 4 BRU A N1
73 C C2 . BRU A 4 ? 0.1110 0.0945 0.1071 0.0040 -0.0109 0.0085 4 BRU A C2
74 N N3 . BRU A 4 ? 0.1034 0.0898 0.0967 0.0057 -0.0054 0.0043 4 BRU A N3
75 C C4 . BRU A 4 ? 0.1109 0.0972 0.0959 0.0069 -0.0044 0.0004 4 BRU A C4
76 C C5 . BRU A 4 ? 0.1327 0.1146 0.1089 0.0060 -0.0084 -0.0006 4 BRU A C5
77 C C6 . BRU A 4 ? 0.1322 0.1102 0.1077 0.0034 -0.0144 0.0035 4 BRU A C6
78 O O2 . BRU A 4 ? 0.1180 0.1021 0.1262 0.0035 -0.0118 0.0121 4 BRU A O2
79 O O4 . BRU A 4 ? 0.1145 0.1037 0.1002 0.0084 -0.0008 -0.0026 4 BRU A O4
80 BR BR . BRU A 4 ? 0.1567 0.1377 0.1249 0.0082 -0.0055 -0.0078 4 BRU A BR
81 C "C1'" . BRU A 4 ? 0.1321 0.1076 0.1224 -0.0002 -0.0245 0.0138 4 BRU A "C1'"
82 C "C2'" . BRU A 4 ? 0.1291 0.1013 0.1114 -0.0039 -0.0285 0.0182 4 BRU A "C2'"
83 C "C3'" . BRU A 4 ? 0.1427 0.1089 0.1047 -0.0066 -0.0313 0.0153 4 BRU A "C3'"
84 C "C4'" . BRU A 4 ? 0.1457 0.1101 0.1133 -0.0055 -0.0356 0.0140 4 BRU A "C4'"
85 O "O3'" . BRU A 4 ? 0.1594 0.1190 0.1085 -0.0123 -0.0383 0.0203 4 BRU A "O3'"
86 O "O4'" . BRU A 4 ? 0.1328 0.1037 0.1156 -0.0013 -0.0295 0.0122 4 BRU A "O4'"
87 C "C5'" . BRU A 4 ? 0.1584 0.1174 0.1094 -0.0062 -0.0355 0.0077 4 BRU A "C5'"
88 O "O5'" . BRU A 4 ? 0.1654 0.1278 0.1115 -0.0031 -0.0260 0.0015 4 BRU A "O5'"
89 P P . BRU A 4 ? 0.1783 0.1358 0.1084 -0.0032 -0.0224 -0.0067 4 BRU A P
90 O OP1 . BRU A 4 ? 0.2262 0.1740 0.1377 -0.0092 -0.0288 -0.0060 4 BRU A OP1
91 O OP2 . BRU A 4 ? 0.2086 0.1717 0.1379 -0.0009 -0.0124 -0.0111 4 BRU A OP2
92 P P . DA A 5 ? 0.1738 0.1330 0.1112 -0.0155 -0.0343 0.0222 5 DA A P
93 O OP1 . DA A 5 ? 0.2419 0.1913 0.1592 -0.0230 -0.0428 0.0267 5 DA A OP1
94 O OP2 . DA A 5 ? 0.2160 0.1803 0.1490 -0.0125 -0.0226 0.0147 5 DA A OP2
95 O "O5'" . DA A 5 ? 0.1503 0.1135 0.1093 -0.0140 -0.0361 0.0288 5 DA A "O5'"
96 C "C5'" . DA A 5 ? 0.1464 0.1124 0.1066 -0.0143 -0.0304 0.0300 5 DA A "C5'"
97 C "C4'" . DA A 5 ? 0.1323 0.1028 0.1172 -0.0105 -0.0294 0.0320 5 DA A "C4'"
98 O "O4'" . DA A 5 ? 0.1186 0.0942 0.1136 -0.0054 -0.0240 0.0259 5 DA A "O4'"
99 C "C3'" . DA A 5 ? 0.1326 0.1059 0.1210 -0.0103 -0.0232 0.0321 5 DA A "C3'"
100 O "O3'" . DA A 5 ? 0.1459 0.1142 0.1359 -0.0146 -0.0301 0.0406 5 DA A "O3'"
101 C "C2'" . DA A 5 ? 0.1174 0.0956 0.1258 -0.0052 -0.0182 0.0283 5 DA A "C2'"
102 C "C1'" . DA A 5 ? 0.1084 0.0885 0.1133 -0.0026 -0.0165 0.0230 5 DA A "C1'"
103 N N9 . DA A 5 ? 0.1097 0.0932 0.1045 -0.0010 -0.0095 0.0164 5 DA A N9
104 C C8 . DA A 5 ? 0.1151 0.0979 0.0953 -0.0015 -0.0089 0.0131 5 DA A C8
105 N N7 . DA A 5 ? 0.1125 0.0992 0.0915 0.0009 -0.0029 0.0076 5 DA A N7
106 C C5 . DA A 5 ? 0.0958 0.0854 0.0861 0.0024 0.0000 0.0075 5 DA A C5
107 C C6 . DA A 5 ? 0.0955 0.0887 0.0890 0.0041 0.0046 0.0036 5 DA A C6
108 N N6 . DA A 5 ? 0.1019 0.0976 0.0912 0.0055 0.0066 -0.0004 5 DA A N6
109 N N1 . DA A 5 ? 0.0920 0.0854 0.0941 0.0042 0.0066 0.0037 5 DA A N1
110 C C2 . DA A 5 ? 0.0965 0.0875 0.1069 0.0034 0.0049 0.0072 5 DA A C2
111 N N3 . DA A 5 ? 0.0914 0.0798 0.1034 0.0023 -0.0002 0.0120 5 DA A N3
112 C C4 . DA A 5 ? 0.0960 0.0835 0.0958 0.0014 -0.0030 0.0122 5 DA A C4
113 P P . DC A 6 ? 0.1599 0.1269 0.1381 -0.0189 -0.0265 0.0430 6 DC A P
114 O OP1 . DC A 6 ? 0.1886 0.1483 0.1695 -0.0239 -0.0369 0.0537 6 DC A OP1
115 O OP2 . DC A 6 ? 0.1907 0.1588 0.1469 -0.0210 -0.0202 0.0378 6 DC A OP2
116 O "O5'" . DC A 6 ? 0.1439 0.1169 0.1378 -0.0145 -0.0180 0.0383 6 DC A "O5'"
117 C "C5'" . DC A 6 ? 0.1493 0.1215 0.1650 -0.0122 -0.0202 0.0406 6 DC A "C5'"
118 C "C4'" . DC A 6 ? 0.1387 0.1156 0.1633 -0.0083 -0.0111 0.0332 6 DC A "C4'"
119 O "O4'" . DC A 6 ? 0.1247 0.1061 0.1469 -0.0046 -0.0066 0.0260 6 DC A "O4'"
120 C "C3'" . DC A 6 ? 0.1267 0.1061 0.1421 -0.0106 -0.0055 0.0314 6 DC A "C3'"
121 O "O3'" . DC A 6 ? 0.1381 0.1135 0.1597 -0.0138 -0.0080 0.0373 6 DC A "O3'"
122 C "C2'" . DC A 6 ? 0.1164 0.1002 0.1383 -0.0065 0.0012 0.0231 6 DC A "C2'"
123 C "C1'" . DC A 6 ? 0.1099 0.0951 0.1288 -0.0036 0.0005 0.0201 6 DC A "C1'"
124 N N1 . DC A 6 ? 0.1073 0.0960 0.1115 -0.0037 0.0028 0.0169 6 DC A N1
125 C C2 . DC A 6 ? 0.1088 0.1018 0.1123 -0.0019 0.0078 0.0110 6 DC A C2
126 O O2 . DC A 6 ? 0.1136 0.1067 0.1249 -0.0011 0.0100 0.0086 6 DC A O2
127 N N3 . DC A 6 ? 0.1009 0.0970 0.0957 -0.0013 0.0097 0.0078 6 DC A N3
128 C C4 . DC A 6 ? 0.1067 0.1011 0.0912 -0.0027 0.0081 0.0092 6 DC A C4
129 N N4 . DC A 6 ? 0.1219 0.1190 0.1000 -0.0017 0.0113 0.0046 6 DC A N4
130 C C5 . DC A 6 ? 0.1111 0.1001 0.0919 -0.0057 0.0027 0.0152 6 DC A C5
131 C C6 . DC A 6 ? 0.1182 0.1049 0.1103 -0.0060 -0.0005 0.0195 6 DC A C6
132 P P . DA A 7 ? 0.1407 0.1167 0.1504 -0.0193 -0.0051 0.0401 7 DA A P
133 O OP1 . DA A 7 ? 0.1641 0.1337 0.1828 -0.0228 -0.0104 0.0481 7 DA A OP1
134 O OP2 . DA A 7 ? 0.1781 0.1554 0.1673 -0.0225 -0.0038 0.0405 7 DA A OP2
135 O "O5'" . DA A 7 ? 0.1229 0.1053 0.1374 -0.0167 0.0030 0.0319 7 DA A "O5'"
136 C "C5'" . DA A 7 ? 0.1217 0.1024 0.1515 -0.0145 0.0039 0.0290 7 DA A "C5'"
137 C "C4'" . DA A 7 ? 0.1079 0.0940 0.1372 -0.0132 0.0098 0.0216 7 DA A "C4'"
138 O "O4'" . DA A 7 ? 0.1073 0.0974 0.1307 -0.0097 0.0115 0.0163 7 DA A "O4'"
139 C "C3'" . DA A 7 ? 0.1114 0.1024 0.1345 -0.0171 0.0130 0.0228 7 DA A "C3'"
140 O "O3'" . DA A 7 ? 0.1157 0.1038 0.1469 -0.0206 0.0125 0.0257 7 DA A "O3'"
141 C "C2'" . DA A 7 ? 0.1082 0.1054 0.1310 -0.0143 0.0165 0.0153 7 DA A "C2'"
142 C "C1'" . DA A 7 ? 0.0989 0.0952 0.1176 -0.0101 0.0151 0.0127 7 DA A "C1'"
143 N N9 . DA A 7 ? 0.1003 0.1000 0.1090 -0.0097 0.0160 0.0128 7 DA A N9
144 C C8 . DA A 7 ? 0.1066 0.1031 0.1071 -0.0107 0.0135 0.0167 7 DA A C8
145 N N7 . DA A 7 ? 0.1086 0.1078 0.0997 -0.0101 0.0155 0.0141 7 DA A N7
146 C C5 . DA A 7 ? 0.1019 0.1072 0.0982 -0.0079 0.0194 0.0086 7 DA A C5
147 C C6 . DA A 7 ? 0.1007 0.1110 0.0953 -0.0058 0.0228 0.0036 7 DA A C6
148 N N6 . DA A 7 ? 0.1144 0.1238 0.0992 -0.0055 0.0241 0.0020 7 DA A N6
149 N N1 . DA A 7 ? 0.1003 0.1158 0.1046 -0.0041 0.0239 0.0001 7 DA A N1
150 C C2 . DA A 7 ? 0.1075 0.1224 0.1191 -0.0052 0.0221 0.0009 7 DA A C2
151 N N3 . DA A 7 ? 0.0987 0.1085 0.1113 -0.0072 0.0203 0.0042 7 DA A N3
152 C C4 . DA A 7 ? 0.0972 0.1027 0.1033 -0.0080 0.0190 0.0082 7 DA A C4
153 P P . DC A 8 ? 0.1244 0.1152 0.1514 -0.0269 0.0148 0.0311 8 DC A P
154 O OP1 . DC A 8 ? 0.1331 0.1180 0.1710 -0.0300 0.0121 0.0347 8 DC A OP1
155 O OP2 . DC A 8 ? 0.1589 0.1489 0.1715 -0.0298 0.0145 0.0364 8 DC A OP2
156 O "O5'" . DC A 8 ? 0.1316 0.1321 0.1594 -0.0264 0.0205 0.0249 8 DC A "O5'"
157 C "C5'" . DC A 8 ? 0.1513 0.1528 0.1898 -0.0258 0.0201 0.0204 8 DC A "C5'"
158 C "C4'" . DC A 8 ? 0.1454 0.1568 0.1865 -0.0256 0.0237 0.0162 8 DC A "C4'"
159 O "O4'" . DC A 8 ? 0.1281 0.1421 0.1639 -0.0205 0.0238 0.0115 8 DC A "O4'"
160 C "C3'" . DC A 8 ? 0.1570 0.1756 0.1970 -0.0297 0.0296 0.0195 8 DC A "C3'"
161 O "O3'" . DC A 8 ? 0.2045 0.2240 0.2539 -0.0351 0.0303 0.0228 8 DC A "O3'"
162 C "C2'" . DC A 8 ? 0.1682 0.1959 0.2121 -0.0262 0.0326 0.0135 8 DC A "C2'"
163 C "C1'" . DC A 8 ? 0.1288 0.1518 0.1657 -0.0205 0.0284 0.0098 8 DC A "C1'"
164 N N1 . DC A 8 ? 0.1171 0.1398 0.1422 -0.0187 0.0310 0.0100 8 DC A N1
165 C C2 . DC A 8 ? 0.1047 0.1337 0.1305 -0.0156 0.0343 0.0052 8 DC A C2
166 O O2 . DC A 8 ? 0.1123 0.1476 0.1505 -0.0144 0.0344 0.0020 8 DC A O2
167 N N3 . DC A 8 ? 0.1071 0.1343 0.1211 -0.0144 0.0365 0.0044 8 DC A N3
168 C C4 . DC A 8 ? 0.1139 0.1337 0.1153 -0.0166 0.0343 0.0089 8 DC A C4
169 N N4 . DC A 8 ? 0.1260 0.1432 0.1146 -0.0162 0.0354 0.0077 8 DC A N4
170 C C5 . DC A 8 ? 0.1201 0.1341 0.1227 -0.0196 0.0300 0.0148 8 DC A C5
171 C C6 . DC A 8 ? 0.1207 0.1363 0.1355 -0.0203 0.0291 0.0147 8 DC A C6
172 O O . HOH B . ? 0.3762 0.4337 0.3408 -0.0749 0.1050 -0.0270 101 HOH A O
173 O O . HOH B . ? 0.4258 0.4318 0.4355 0.1314 0.0217 0.1705 102 HOH A O
174 O O . HOH B . ? 0.3905 0.3812 0.3217 -0.0866 -0.1058 0.1134 103 HOH A O
175 O O . HOH B . ? 0.1812 0.3419 0.2471 -0.0384 -0.0466 0.0638 104 HOH A O
176 O O . HOH B . ? 0.1991 0.4016 0.1925 -0.0115 -0.0209 0.0142 105 HOH A O
177 O O . HOH B . ? 0.3281 0.2938 0.3444 -0.1011 0.0926 0.0441 106 HOH A O
178 O O . HOH B . ? 0.1744 0.3147 0.2961 0.0846 -0.0757 -0.1101 107 HOH A O
179 O O . HOH B . ? 0.2037 0.2860 0.3128 0.0299 -0.0080 0.0260 108 HOH A O
180 O O . HOH B . ? 0.3521 0.1717 0.3025 0.0348 0.0863 -0.0362 109 HOH A O
181 O O . HOH B . ? 0.3848 0.3539 0.3201 -0.1134 0.0008 0.1716 110 HOH A O
182 O O . HOH B . ? 0.3496 0.4345 0.3847 -0.0274 -0.0323 0.0222 111 HOH A O
183 O O . HOH B . ? 0.3244 0.2541 0.2357 -0.0840 -0.0303 0.0316 112 HOH A O
184 O O . HOH B . ? 0.3833 0.3550 0.2323 -0.0327 0.0580 0.0497 113 HOH A O
185 O O . HOH B . ? 0.3931 0.3378 0.4776 -0.0930 0.0039 -0.0339 114 HOH A O
186 O O . HOH B . ? 0.2625 0.3707 0.2147 0.0573 -0.0321 -0.0384 115 HOH A O
187 O O . HOH B . ? 0.1827 0.4079 0.1944 -0.1237 0.0363 -0.0070 116 HOH A O
188 O O . HOH B . ? 0.1096 0.2810 0.2061 0.0211 0.0202 0.0653 117 HOH A O
189 O O . HOH B . ? 0.2979 0.0942 0.1940 -0.0058 0.1140 -0.0097 118 HOH A O
190 O O . HOH B . ? 0.4599 0.4375 0.3980 0.0450 0.0283 -0.0362 119 HOH A O
191 O O . HOH B . ? 0.2089 0.4149 0.2017 0.0252 0.0240 0.0752 120 HOH A O
192 O O . HOH B . ? 0.3255 0.1958 0.2406 -0.0408 0.0343 -0.0369 121 HOH A O
193 O O . HOH B . ? 0.2160 0.1314 0.2626 0.0245 0.0203 -0.0146 122 HOH A O
194 O O . HOH B . ? 0.2315 0.1574 0.2298 -0.0005 -0.0788 -0.0351 123 HOH A O
195 O O . HOH B . ? 0.2660 0.1790 0.2573 -0.0160 -0.0358 -0.0463 124 HOH A O
196 O O . HOH B . ? 0.1360 0.1746 0.1830 0.0145 0.0060 -0.0245 125 HOH A O
197 O O . HOH B . ? 0.2859 0.1899 0.2592 -0.0692 0.0055 -0.0977 126 HOH A O
198 O O . HOH B . ? 0.1042 0.1184 0.1243 0.0041 -0.0076 0.0043 127 HOH A O
199 O O . HOH B . ? 0.3024 0.2802 0.3227 -0.1580 0.0810 -0.0052 128 HOH A O
200 O O . HOH B . ? 0.2950 0.1181 0.1802 -0.0218 -0.0834 -0.0199 129 HOH A O
201 O O . HOH B . ? 0.3466 0.2141 0.2398 0.1449 -0.0642 -0.0612 130 HOH A O
202 O O . HOH B . ? 0.3600 0.3021 0.3118 0.0598 -0.0293 -0.0315 131 HOH A O
203 O O . HOH B . ? 0.1418 0.2394 0.2591 0.0449 -0.0488 -0.0446 132 HOH A O
204 O O . HOH B . ? 0.3610 0.2680 0.2884 -0.0588 0.0726 -0.0233 133 HOH A O
205 O O . HOH B . ? 0.3708 0.3333 0.1695 -0.0701 0.0904 -0.0607 134 HOH A O
206 O O . HOH B . ? 0.3637 0.2411 0.2909 0.1110 -0.0929 0.0668 135 HOH A O
207 O O . HOH B . ? 0.2230 0.2022 0.2263 -0.0422 -0.0749 -0.0620 136 HOH A O
208 O O . HOH B . ? 0.3122 0.2039 0.3423 0.0444 -0.0680 0.0505 137 HOH A O
209 O O . HOH B . ? 0.1076 0.2598 0.3128 0.0089 -0.0086 -0.1016 138 HOH A O
210 O O . HOH B . ? 0.3572 0.4658 0.4928 0.0627 -0.0191 0.1013 139 HOH A O
211 O O . HOH B . ? 0.4648 0.4321 0.3702 -0.0856 0.0314 0.0274 140 HOH A O
212 O O . HOH B . ? 0.3593 0.4376 0.3699 -0.0960 0.0239 0.0495 141 HOH A O
213 O O . HOH B . ? 0.3804 0.3095 0.3605 -0.0572 -0.0465 -0.0263 142 HOH A O
214 O O . HOH B . ? 0.2282 0.1213 0.1886 0.0099 -0.0586 -0.0013 143 HOH A O
215 O O . HOH B . ? 0.4197 0.3619 0.4319 0.0678 -0.0110 0.0811 144 HOH A O
216 O O . HOH B . ? 0.3913 0.4418 0.4456 -0.0066 -0.0101 0.0502 145 HOH A O
217 O O . HOH B . ? 0.4913 0.3745 0.3740 -0.0433 0.0390 -0.0029 146 HOH A O
218 O O . HOH B . ? 0.5337 0.4089 0.5445 -0.0888 -0.0323 0.0168 147 HOH A O
219 O O . HOH B . ? 0.3038 0.3866 0.4418 -0.0488 -0.0819 -0.0361 148 HOH A O
220 O O . HOH B . ? 0.2601 0.3531 0.3681 0.0106 0.1049 0.0251 149 HOH A O
221 O O . HOH B . ? 0.4309 0.4834 0.4958 -0.0389 -0.0667 -0.0714 150 HOH A O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 LR6 2 2 2 LR6 LR6 A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 BRU 4 4 4 BRU BRU A . n
A 1 5 DA 5 5 5 DA DA A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DA 7 7 7 DA DA A . n
A 1 8 DC 8 8 8 DC DC A . n
#
loop_
_pdbx_contact_author.id
_pdbx_contact_author.email
_pdbx_contact_author.name_first
_pdbx_contact_author.name_last
_pdbx_contact_author.name_mi
_pdbx_contact_author.role
_pdbx_contact_author.identifier_ORCID
2 obika@phs.osaka-u.ac.jp Satoshi Obika ? 'principal investigator/group leader' 0000-0002-6842-6812
3 yamaguchi-ta@phs.osaka-u.ac.jp Takao Yamaguchi ? 'principal investigator/group leader' 0000-0003-3180-0257
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 40 HOH HOH A .
B 2 HOH 2 102 47 HOH HOH A .
B 2 HOH 3 103 42 HOH HOH A .
B 2 HOH 4 104 11 HOH HOH A .
B 2 HOH 5 105 31 HOH HOH A .
B 2 HOH 6 106 26 HOH HOH A .
B 2 HOH 7 107 18 HOH HOH A .
B 2 HOH 8 108 17 HOH HOH A .
B 2 HOH 9 109 24 HOH HOH A .
B 2 HOH 10 110 29 HOH HOH A .
B 2 HOH 11 111 37 HOH HOH A .
B 2 HOH 12 112 19 HOH HOH A .
B 2 HOH 13 113 32 HOH HOH A .
B 2 HOH 14 114 39 HOH HOH A .
B 2 HOH 15 115 23 HOH HOH A .
B 2 HOH 16 116 14 HOH HOH A .
B 2 HOH 17 117 4 HOH HOH A .
B 2 HOH 18 118 6 HOH HOH A .
B 2 HOH 19 119 43 HOH HOH A .
B 2 HOH 20 120 12 HOH HOH A .
B 2 HOH 21 121 25 HOH HOH A .
B 2 HOH 22 122 8 HOH HOH A .
B 2 HOH 23 123 5 HOH HOH A .
B 2 HOH 24 124 22 HOH HOH A .
B 2 HOH 25 125 3 HOH HOH A .
B 2 HOH 26 126 21 HOH HOH A .
B 2 HOH 27 127 1 HOH HOH A .
B 2 HOH 28 128 30 HOH HOH A .
B 2 HOH 29 129 7 HOH HOH A .
B 2 HOH 30 130 15 HOH HOH A .
B 2 HOH 31 131 28 HOH HOH A .
B 2 HOH 32 132 10 HOH HOH A .
B 2 HOH 33 133 35 HOH HOH A .
B 2 HOH 34 134 27 HOH HOH A .
B 2 HOH 35 135 20 HOH HOH A .
B 2 HOH 36 136 16 HOH HOH A .
B 2 HOH 37 137 9 HOH HOH A .
B 2 HOH 38 138 13 HOH HOH A .
B 2 HOH 39 139 44 HOH HOH A .
B 2 HOH 40 140 46 HOH HOH A .
B 2 HOH 41 141 33 HOH HOH A .
B 2 HOH 42 142 36 HOH HOH A .
B 2 HOH 43 143 2 HOH HOH A .
B 2 HOH 44 144 51 HOH HOH A .
B 2 HOH 45 145 49 HOH HOH A .
B 2 HOH 46 146 48 HOH HOH A .
B 2 HOH 47 147 38 HOH HOH A .
B 2 HOH 48 148 34 HOH HOH A .
B 2 HOH 49 149 50 HOH HOH A .
B 2 HOH 50 150 45 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2030 ?
1 MORE 10 ?
1 'SSA (A^2)' 2900 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 42.4940000000 -1.0000000000
0.0000000000 0.0000000000 42.4940000000 0.0000000000 0.0000000000 -1.0000000000 12.1575000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2023-08-09
2 'Structure model' 1 1 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' citation
4 2 'Structure model' citation_author
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation.page_first'
3 2 'Structure model' '_citation.page_last'
4 2 'Structure model' '_citation.title'
5 2 'Structure model' '_citation_author.identifier_ORCID'
#
_pdbx_refine_tls.id 1
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x 32.3033
_pdbx_refine_tls.origin_y 8.7428
_pdbx_refine_tls.origin_z 3.6578
_pdbx_refine_tls.T[1][1] 0.0966
_pdbx_refine_tls.T[1][1]_esd ?
_pdbx_refine_tls.T[1][2] 0.0064
_pdbx_refine_tls.T[1][2]_esd ?
_pdbx_refine_tls.T[1][3] 0.0010
_pdbx_refine_tls.T[1][3]_esd ?
_pdbx_refine_tls.T[2][2] 0.0867
_pdbx_refine_tls.T[2][2]_esd ?
_pdbx_refine_tls.T[2][3] -0.0018
_pdbx_refine_tls.T[2][3]_esd ?
_pdbx_refine_tls.T[3][3] 0.0760
_pdbx_refine_tls.T[3][3]_esd ?
_pdbx_refine_tls.L[1][1] 1.3772
_pdbx_refine_tls.L[1][1]_esd ?
_pdbx_refine_tls.L[1][2] 0.8143
_pdbx_refine_tls.L[1][2]_esd ?
_pdbx_refine_tls.L[1][3] 0.2878
_pdbx_refine_tls.L[1][3]_esd ?
_pdbx_refine_tls.L[2][2] 2.3202
_pdbx_refine_tls.L[2][2]_esd ?
_pdbx_refine_tls.L[2][3] -0.0906
_pdbx_refine_tls.L[2][3]_esd ?
_pdbx_refine_tls.L[3][3] 0.6077
_pdbx_refine_tls.L[3][3]_esd ?
_pdbx_refine_tls.S[1][1] -0.0083
_pdbx_refine_tls.S[1][1]_esd ?
_pdbx_refine_tls.S[1][2] 0.1349
_pdbx_refine_tls.S[1][2]_esd ?
_pdbx_refine_tls.S[1][3] 0.0310
_pdbx_refine_tls.S[1][3]_esd ?
_pdbx_refine_tls.S[2][1] -0.1852
_pdbx_refine_tls.S[2][1]_esd ?
_pdbx_refine_tls.S[2][2] 0.0768
_pdbx_refine_tls.S[2][2]_esd ?
_pdbx_refine_tls.S[2][3] 0.0455
_pdbx_refine_tls.S[2][3]_esd ?
_pdbx_refine_tls.S[3][1] 0.0354
_pdbx_refine_tls.S[3][1]_esd ?
_pdbx_refine_tls.S[3][2] 0.0713
_pdbx_refine_tls.S[3][2]_esd ?
_pdbx_refine_tls.S[3][3] -0.0560
_pdbx_refine_tls.S[3][3]_esd ?
#
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.beg_auth_asym_id ?
_pdbx_refine_tls_group.beg_auth_seq_id ?
_pdbx_refine_tls_group.beg_PDB_ins_code ?
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id ?
_pdbx_refine_tls_group.end_auth_seq_id ?
_pdbx_refine_tls_group.end_PDB_ins_code ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details
;chain 'A' and (resid 1 through 8 )
;
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20-1-4487 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 5
#
_pdbx_entry_details.entry_id 8HU5
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BRU N1 N N N 1
BRU C2 C N N 2
BRU N3 N N N 3
BRU C4 C N N 4
BRU C5 C N N 5
BRU C6 C N N 6
BRU O2 O N N 7
BRU O4 O N N 8
BRU BR BR N N 9
BRU "C1'" C N R 10
BRU "C2'" C N N 11
BRU "C3'" C N S 12
BRU "C4'" C N R 13
BRU "O3'" O N N 14
BRU "O4'" O N N 15
BRU "C5'" C N N 16
BRU "O5'" O N N 17
BRU P P N N 18
BRU OP1 O N N 19
BRU OP2 O N N 20
BRU OP3 O N N 21
BRU HN3 H N N 22
BRU H6 H N N 23
BRU "H1'" H N N 24
BRU "H2'" H N N 25
BRU "H2''" H N N 26
BRU "H3'" H N N 27
BRU "H4'" H N N 28
BRU "HO3'" H N N 29
BRU "H5'" H N N 30
BRU "H5''" H N N 31
BRU HOP2 H N N 32
BRU HOP3 H N N 33
DA OP3 O N N 34
DA P P N N 35
DA OP1 O N N 36
DA OP2 O N N 37
DA "O5'" O N N 38
DA "C5'" C N N 39
DA "C4'" C N R 40
DA "O4'" O N N 41
DA "C3'" C N S 42
DA "O3'" O N N 43
DA "C2'" C N N 44
DA "C1'" C N R 45
DA N9 N Y N 46
DA C8 C Y N 47
DA N7 N Y N 48
DA C5 C Y N 49
DA C6 C Y N 50
DA N6 N N N 51
DA N1 N Y N 52
DA C2 C Y N 53
DA N3 N Y N 54
DA C4 C Y N 55
DA HOP3 H N N 56
DA HOP2 H N N 57
DA "H5'" H N N 58
DA "H5''" H N N 59
DA "H4'" H N N 60
DA "H3'" H N N 61
DA "HO3'" H N N 62
DA "H2'" H N N 63
DA "H2''" H N N 64
DA "H1'" H N N 65
DA H8 H N N 66
DA H61 H N N 67
DA H62 H N N 68
DA H2 H N N 69
DC OP3 O N N 70
DC P P N N 71
DC OP1 O N N 72
DC OP2 O N N 73
DC "O5'" O N N 74
DC "C5'" C N N 75
DC "C4'" C N R 76
DC "O4'" O N N 77
DC "C3'" C N S 78
DC "O3'" O N N 79
DC "C2'" C N N 80
DC "C1'" C N R 81
DC N1 N N N 82
DC C2 C N N 83
DC O2 O N N 84
DC N3 N N N 85
DC C4 C N N 86
DC N4 N N N 87
DC C5 C N N 88
DC C6 C N N 89
DC HOP3 H N N 90
DC HOP2 H N N 91
DC "H5'" H N N 92
DC "H5''" H N N 93
DC "H4'" H N N 94
DC "H3'" H N N 95
DC "HO3'" H N N 96
DC "H2'" H N N 97
DC "H2''" H N N 98
DC "H1'" H N N 99
DC H41 H N N 100
DC H42 H N N 101
DC H5 H N N 102
DC H6 H N N 103
DG OP3 O N N 104
DG P P N N 105
DG OP1 O N N 106
DG OP2 O N N 107
DG "O5'" O N N 108
DG "C5'" C N N 109
DG "C4'" C N R 110
DG "O4'" O N N 111
DG "C3'" C N S 112
DG "O3'" O N N 113
DG "C2'" C N N 114
DG "C1'" C N R 115
DG N9 N Y N 116
DG C8 C Y N 117
DG N7 N Y N 118
DG C5 C Y N 119
DG C6 C N N 120
DG O6 O N N 121
DG N1 N N N 122
DG C2 C N N 123
DG N2 N N N 124
DG N3 N N N 125
DG C4 C Y N 126
DG HOP3 H N N 127
DG HOP2 H N N 128
DG "H5'" H N N 129
DG "H5''" H N N 130
DG "H4'" H N N 131
DG "H3'" H N N 132
DG "HO3'" H N N 133
DG "H2'" H N N 134
DG "H2''" H N N 135
DG "H1'" H N N 136
DG H8 H N N 137
DG H1 H N N 138
DG H21 H N N 139
DG H22 H N N 140
HOH O O N N 141
HOH H1 H N N 142
HOH H2 H N N 143
LR6 C2 C N N 144
LR6 C4 C N N 145
LR6 C5 C N N 146
LR6 C6 C N N 147
LR6 N1 N N N 148
LR6 N3 N N N 149
LR6 CD C N N 150
LR6 "C1'" C N R 151
LR6 "C2'" C N R 152
LR6 "C3'" C N S 153
LR6 "C4'" C N R 154
LR6 "C5'" C N N 155
LR6 C5M C N N 156
LR6 "C6'" C N N 157
LR6 "C7'" C N N 158
LR6 "C8'" C N N 159
LR6 "C9'" C N N 160
LR6 "N2'" N N N 161
LR6 "N3'" N N N 162
LR6 "N4'" N N N 163
LR6 O2 O N N 164
LR6 "O3'" O N N 165
LR6 O4 O N N 166
LR6 "O4'" O N N 167
LR6 "O5'" O N N 168
LR6 OP1 O N N 169
LR6 OP2 O N N 170
LR6 P P N N 171
LR6 "C10'" C N N 172
LR6 "C11'" C N N 173
LR6 H1 H N N 174
LR6 H2 H N N 175
LR6 H3 H N N 176
LR6 H4 H N N 177
LR6 H5 H N N 178
LR6 H6 H N N 179
LR6 H7 H N N 180
LR6 H8 H N N 181
LR6 H9 H N N 182
LR6 H10 H N N 183
LR6 H11 H N N 184
LR6 H12 H N N 185
LR6 H13 H N N 186
LR6 H14 H N N 187
LR6 H15 H N N 188
LR6 H16 H N N 189
LR6 H17 H N N 190
LR6 H18 H N N 191
LR6 H19 H N N 192
LR6 "HO3'" H N N 193
LR6 HOP2 H N N 194
LR6 H23 H N N 195
LR6 H24 H N N 196
LR6 H25 H N N 197
LR6 H26 H N N 198
LR6 H27 H N N 199
LR6 H28 H N N 200
LR6 OP3 O N N 201
LR6 HOP3 H N N 202
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BRU N1 C2 sing N N 1
BRU N1 C6 sing N N 2
BRU N1 "C1'" sing N N 3
BRU C2 N3 sing N N 4
BRU C2 O2 doub N N 5
BRU N3 C4 sing N N 6
BRU N3 HN3 sing N N 7
BRU C4 C5 sing N N 8
BRU C4 O4 doub N N 9
BRU C5 C6 doub N N 10
BRU C5 BR sing N N 11
BRU C6 H6 sing N N 12
BRU "C1'" "C2'" sing N N 13
BRU "C1'" "O4'" sing N N 14
BRU "C1'" "H1'" sing N N 15
BRU "C2'" "C3'" sing N N 16
BRU "C2'" "H2'" sing N N 17
BRU "C2'" "H2''" sing N N 18
BRU "C3'" "C4'" sing N N 19
BRU "C3'" "O3'" sing N N 20
BRU "C3'" "H3'" sing N N 21
BRU "C4'" "O4'" sing N N 22
BRU "C4'" "C5'" sing N N 23
BRU "C4'" "H4'" sing N N 24
BRU "O3'" "HO3'" sing N N 25
BRU "C5'" "O5'" sing N N 26
BRU "C5'" "H5'" sing N N 27
BRU "C5'" "H5''" sing N N 28
BRU "O5'" P sing N N 29
BRU P OP1 doub N N 30
BRU P OP2 sing N N 31
BRU P OP3 sing N N 32
BRU OP2 HOP2 sing N N 33
BRU OP3 HOP3 sing N N 34
DA OP3 P sing N N 35
DA OP3 HOP3 sing N N 36
DA P OP1 doub N N 37
DA P OP2 sing N N 38
DA P "O5'" sing N N 39
DA OP2 HOP2 sing N N 40
DA "O5'" "C5'" sing N N 41
DA "C5'" "C4'" sing N N 42
DA "C5'" "H5'" sing N N 43
DA "C5'" "H5''" sing N N 44
DA "C4'" "O4'" sing N N 45
DA "C4'" "C3'" sing N N 46
DA "C4'" "H4'" sing N N 47
DA "O4'" "C1'" sing N N 48
DA "C3'" "O3'" sing N N 49
DA "C3'" "C2'" sing N N 50
DA "C3'" "H3'" sing N N 51
DA "O3'" "HO3'" sing N N 52
DA "C2'" "C1'" sing N N 53
DA "C2'" "H2'" sing N N 54
DA "C2'" "H2''" sing N N 55
DA "C1'" N9 sing N N 56
DA "C1'" "H1'" sing N N 57
DA N9 C8 sing Y N 58
DA N9 C4 sing Y N 59
DA C8 N7 doub Y N 60
DA C8 H8 sing N N 61
DA N7 C5 sing Y N 62
DA C5 C6 sing Y N 63
DA C5 C4 doub Y N 64
DA C6 N6 sing N N 65
DA C6 N1 doub Y N 66
DA N6 H61 sing N N 67
DA N6 H62 sing N N 68
DA N1 C2 sing Y N 69
DA C2 N3 doub Y N 70
DA C2 H2 sing N N 71
DA N3 C4 sing Y N 72
DC OP3 P sing N N 73
DC OP3 HOP3 sing N N 74
DC P OP1 doub N N 75
DC P OP2 sing N N 76
DC P "O5'" sing N N 77
DC OP2 HOP2 sing N N 78
DC "O5'" "C5'" sing N N 79
DC "C5'" "C4'" sing N N 80
DC "C5'" "H5'" sing N N 81
DC "C5'" "H5''" sing N N 82
DC "C4'" "O4'" sing N N 83
DC "C4'" "C3'" sing N N 84
DC "C4'" "H4'" sing N N 85
DC "O4'" "C1'" sing N N 86
DC "C3'" "O3'" sing N N 87
DC "C3'" "C2'" sing N N 88
DC "C3'" "H3'" sing N N 89
DC "O3'" "HO3'" sing N N 90
DC "C2'" "C1'" sing N N 91
DC "C2'" "H2'" sing N N 92
DC "C2'" "H2''" sing N N 93
DC "C1'" N1 sing N N 94
DC "C1'" "H1'" sing N N 95
DC N1 C2 sing N N 96
DC N1 C6 sing N N 97
DC C2 O2 doub N N 98
DC C2 N3 sing N N 99
DC N3 C4 doub N N 100
DC C4 N4 sing N N 101
DC C4 C5 sing N N 102
DC N4 H41 sing N N 103
DC N4 H42 sing N N 104
DC C5 C6 doub N N 105
DC C5 H5 sing N N 106
DC C6 H6 sing N N 107
DG OP3 P sing N N 108
DG OP3 HOP3 sing N N 109
DG P OP1 doub N N 110
DG P OP2 sing N N 111
DG P "O5'" sing N N 112
DG OP2 HOP2 sing N N 113
DG "O5'" "C5'" sing N N 114
DG "C5'" "C4'" sing N N 115
DG "C5'" "H5'" sing N N 116
DG "C5'" "H5''" sing N N 117
DG "C4'" "O4'" sing N N 118
DG "C4'" "C3'" sing N N 119
DG "C4'" "H4'" sing N N 120
DG "O4'" "C1'" sing N N 121
DG "C3'" "O3'" sing N N 122
DG "C3'" "C2'" sing N N 123
DG "C3'" "H3'" sing N N 124
DG "O3'" "HO3'" sing N N 125
DG "C2'" "C1'" sing N N 126
DG "C2'" "H2'" sing N N 127
DG "C2'" "H2''" sing N N 128
DG "C1'" N9 sing N N 129
DG "C1'" "H1'" sing N N 130
DG N9 C8 sing Y N 131
DG N9 C4 sing Y N 132
DG C8 N7 doub Y N 133
DG C8 H8 sing N N 134
DG N7 C5 sing Y N 135
DG C5 C6 sing N N 136
DG C5 C4 doub Y N 137
DG C6 O6 doub N N 138
DG C6 N1 sing N N 139
DG N1 C2 sing N N 140
DG N1 H1 sing N N 141
DG C2 N2 sing N N 142
DG C2 N3 doub N N 143
DG N2 H21 sing N N 144
DG N2 H22 sing N N 145
DG N3 C4 sing N N 146
HOH O H1 sing N N 147
HOH O H2 sing N N 148
LR6 "C9'" "C8'" sing N N 149
LR6 "C11'" "C8'" sing N N 150
LR6 "C8'" "C10'" sing N N 151
LR6 "C8'" "N4'" sing N N 152
LR6 "C7'" "N3'" sing N N 153
LR6 "N4'" CD doub N N 154
LR6 "N3'" CD sing N N 155
LR6 CD "N2'" sing N N 156
LR6 "N2'" "C6'" sing N N 157
LR6 "N2'" "C2'" sing N N 158
LR6 "O3'" "C3'" sing N N 159
LR6 "C6'" "C4'" sing N N 160
LR6 "C2'" "C3'" sing N N 161
LR6 "C2'" "C1'" sing N N 162
LR6 "C3'" "C4'" sing N N 163
LR6 O2 C2 doub N N 164
LR6 "C1'" "O4'" sing N N 165
LR6 "C1'" N1 sing N N 166
LR6 "C4'" "O4'" sing N N 167
LR6 "C4'" "C5'" sing N N 168
LR6 C2 N1 sing N N 169
LR6 C2 N3 sing N N 170
LR6 N1 C6 sing N N 171
LR6 "C5'" "O5'" sing N N 172
LR6 N3 C4 sing N N 173
LR6 "O5'" P sing N N 174
LR6 C6 C5 doub N N 175
LR6 C4 C5 sing N N 176
LR6 C4 O4 doub N N 177
LR6 C5 C5M sing N N 178
LR6 OP1 P doub N N 179
LR6 P OP2 sing N N 180
LR6 C6 H1 sing N N 181
LR6 N3 H2 sing N N 182
LR6 "C1'" H3 sing N N 183
LR6 "C2'" H4 sing N N 184
LR6 "C3'" H5 sing N N 185
LR6 "C5'" H6 sing N N 186
LR6 "C5'" H7 sing N N 187
LR6 C5M H8 sing N N 188
LR6 C5M H9 sing N N 189
LR6 C5M H10 sing N N 190
LR6 "C6'" H11 sing N N 191
LR6 "C6'" H12 sing N N 192
LR6 "C7'" H13 sing N N 193
LR6 "C7'" H14 sing N N 194
LR6 "C7'" H15 sing N N 195
LR6 "C9'" H16 sing N N 196
LR6 "C9'" H17 sing N N 197
LR6 "C9'" H18 sing N N 198
LR6 "N3'" H19 sing N N 199
LR6 "O3'" "HO3'" sing N N 200
LR6 OP2 HOP2 sing N N 201
LR6 "C10'" H23 sing N N 202
LR6 "C10'" H24 sing N N 203
LR6 "C10'" H25 sing N N 204
LR6 "C11'" H26 sing N N 205
LR6 "C11'" H27 sing N N 206
LR6 "C11'" H28 sing N N 207
LR6 P OP3 sing N N 208
LR6 OP3 HOP3 sing N N 209
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
8HU5 'double helix'
8HU5 'a-form double helix'
8HU5 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_665 -0.300 -0.207 0.029 -10.515 -11.727 -2.573 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DG 3 1_555 A DC 6 8_665 -0.261 -0.151 0.103 -8.415 -15.928 1.942 2 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A BRU 4 1_555 A DA 5 8_665 -0.061 -0.166 0.395 -8.046 -10.166 -2.294 3 A_BRU4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A BRU 4 8_665 0.061 -0.166 0.395 8.046 -10.166 -2.294 4 A_DA5:BRU4_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 8_665 0.261 -0.151 0.103 8.415 -15.928 1.942 5 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DC 8 1_555 A DG 1 8_665 0.300 -0.207 0.029 10.515 -11.727 -2.573 6 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_665 A DG 3 1_555 A DC 6 8_665 1.139 -3.201 6.270 0.343 16.739 64.994 -4.099 -1.009 5.405 15.315
-0.314 66.886 1 AA_DG1DG3:DC6DC8_AA A 1 ? A 8 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 8_665 A BRU 4 1_555 A DA 5 8_665 -0.567 -1.421 3.205 -2.104 0.640 37.818 -2.270 0.609 3.207 0.986
3.243 37.880 2 AA_DG3BRU4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A BRU 4 1_555 A DA 5 8_665 A DA 5 1_555 A BRU 4 8_665 0.000 -1.424 2.767 0.000 4.542 27.947 -3.766 0.000 2.509 9.327
0.000 28.306 3 AA_BRU4DA5:BRU4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A BRU 4 8_665 A DC 6 1_555 A DG 3 8_665 0.567 -1.421 3.205 2.104 0.640 37.818 -2.270 -0.609 3.207 0.986
-3.243 37.880 4 AA_DA5DC6:DG3BRU4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 8_665 A DC 8 1_555 A DG 1 8_665 -1.139 -3.201 6.270 -0.343 16.739 64.994 -4.099 1.009 5.405 15.315
0.314 66.886 5 AA_DC6DC8:DG1DG3_AA A 6 ? A 3 ? A 8 ? A 1 ?
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Japan Society for the Promotion of Science (JSPS)' Japan 21K06511 1
'Japan Society for the Promotion of Science (JSPS)' Japan 20K05748 2
'Japan Agency for Medical Research and Development (AMED)' Japan JP19am0101084 3
'Japan Agency for Medical Research and Development (AMED)' Japan JP18am0301004, 4
'Japan Agency for Medical Research and Development (AMED)' Japan 19am0401003 5
'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae0121022, 6
'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae0121023 7
'Japan Agency for Medical Research and Development (AMED)' Japan JP21ae012102 8
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id LR6
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id LR6
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name ?
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.details ?
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#