data_8DDG
#
_entry.id 8DDG
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 8DDG pdb_00008ddg 10.2210/pdb8ddg/pdb
WWPDB D_1000266472 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2022-09-28
2 'Structure model' 1 1 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_audit_revision_group.ordinal 1
_pdbx_audit_revision_group.revision_ordinal 2
_pdbx_audit_revision_group.data_content_type 'Structure model'
_pdbx_audit_revision_group.group 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 8DDG
_pdbx_database_status.recvd_initial_deposition_date 2022-06-18
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB . 8DDH unspecified
PDB . 8DDF unspecified
#
loop_
_pdbx_contact_author.id
_pdbx_contact_author.email
_pdbx_contact_author.name_first
_pdbx_contact_author.name_last
_pdbx_contact_author.name_mi
_pdbx_contact_author.role
_pdbx_contact_author.identifier_ORCID
2 jraskato@ucsc.edu Jevgenij Raskatov A 'principal investigator/group leader' 0000-0002-0082-9113
3 nwvlahakis@g.ucla.edu Niko Vlahakis W 'principal investigator/group leader' 0000-0002-5092-0265
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Sawaya, M.R.' 1 0000-0003-0874-9043
'Hazari, A.' 2 ?
'Eisenberg, D.E.' 3 0000-0003-2432-5419
'Vlahakis, N.W.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Chem Sci'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2041-6520
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 13
_citation.language ?
_citation.page_first 8947
_citation.page_last 8952
_citation.title
'The rippled beta-sheet layer configuration-a novel supramolecular architecture based on predictions by Pauling and Corey.'
_citation.year 2022
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1039/d2sc02531k
_citation.pdbx_database_id_PubMed 36091211
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hazari, A.' 1 ?
primary 'Sawaya, M.R.' 2 ?
primary 'Vlahakis, N.' 3 ?
primary 'Johnstone, T.C.' 4 0000-0003-3615-4530
primary 'Boyer, D.' 5 ?
primary 'Rodriguez, J.' 6 ?
primary 'Eisenberg, D.' 7 ?
primary 'Raskatov, J.A.' 8 0000-0002-0082-9113
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description PHE-TYR-PHE
_entity.formula_weight 475.537
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code FYF
_entity_poly.pdbx_seq_one_letter_code_can FYF
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 PHE n
1 2 TYR n
1 3 PHE n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 3
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id '32630 '
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 PHE 1 67 67 PHE PHE A . n
A 1 2 TYR 2 68 68 TYR TYR A . n
A 1 3 PHE 3 69 69 PHE PHE A . n
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2
? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++
http://www.phenix-online.org/ ? PHENIX ? ? package . 3
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ?
. 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 107.048
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 8DDG
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 23.140
_cell.length_a_esd ?
_cell.length_b 4.840
_cell.length_b_esd ?
_cell.length_c 19.790
_cell.length_c_esd ?
_cell.volume 2119.019
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 8DDG
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall 'C 2y'
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 8DDG
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_detector.area_resol_mean ?
_diffrn_detector.details ?
_diffrn_detector.detector 'POSITION SENSITIVE DETECTOR'
_diffrn_detector.diffrn_id 1
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_collection_date 2021-12-14
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.type 'TVIPS TEMCAM-F416'
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.0197
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.0197
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ELECTRON MICROSCOPE'
_diffrn_source.take-off_angle ?
_diffrn_source.target ?
_diffrn_source.type ?
_diffrn_source.voltage ?
#
_reflns.B_iso_Wilson_estimate 6.869
_reflns.entry_id 8DDG
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 0.900
_reflns.d_resolution_low 18.92
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1237
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 71.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 4.834
_reflns.pdbx_Rmerge_I_obs 0.113
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 8.630
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.932
_reflns.pdbx_scaling_rejects 11
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.129
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 5980
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.991
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
_reflns.pdbx_CC_split_method ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
0.900 1.000 ? 5.010 ? 1639 460 ? 332 72.200 ? ? ? ? 0.322 ? ? ? ? ? ? ? ? 4.937 ? ? ? ? 0.366 ? ? 1 1 0.643 ? ? ? ? ? ? ? ? ? ?
1.000 1.100 ? 7.000 ? 1077 302 ? 218 72.200 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 4.940 ? ? ? ? 0.205 ? ? 2 1 0.963 ? ? ? ? ? ? ? ? ? ?
1.100 1.200 ? 8.950 ? 866 226 ? 174 77.000 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 4.977 ? ? ? ? 0.173 ? ? 3 1 0.985 ? ? ? ? ? ? ? ? ? ?
1.200 1.500 ? 9.510 ? 1189 345 ? 246 71.300 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 4.833 ? ? ? ? 0.168 ? ? 4 1 0.973 ? ? ? ? ? ? ? ? ? ?
1.500 2.000 ? 12.950 ? 718 226 ? 152 67.300 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 4.724 ? ? ? ? 0.104 ? ? 5 1 0.987 ? ? ? ? ? ? ? ? ? ?
2.000 2.300 ? 14.930 ? 202 62 ? 42 67.700 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 4.810 ? ? ? ? 0.109 ? ? 6 1 0.990 ? ? ? ? ? ? ? ? ? ?
2.300 3.000 ? 13.260 ? 147 59 ? 36 61.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 4.083 ? ? ? ? 0.094 ? ? 7 1 0.995 ? ? ? ? ? ? ? ? ? ?
3.000 5.000 ? 13.940 ? 134 50 ? 34 68.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.941 ? ? ? ? 0.085 ? ? 8 1 0.993 ? ? ? ? ? ? ? ? ? ?
5.000 8.000 ? 13.060 ? 8 6 ? 3 50.000 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 2.667 ? ? ? ? 0.047 ? ? 9 1 1.000 ? ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean 3.26
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 8DDG
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 0.90
_refine.ls_d_res_low 5.78
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1232
_refine.ls_number_reflns_R_free 112
_refine.ls_number_reflns_R_work 1120
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 71.21
_refine.ls_percent_reflns_R_free 9.09
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1704
_refine.ls_R_factor_R_free 0.1851
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1692
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.41
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2'
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1000
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 27.6089
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.0753
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 0.90
_refine_hist.d_res_low 5.78
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 35
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 35
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON CRYSTALLOGRAPHY' ? 0.0200 ? 37 ? f_bond_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.2536 ? 49 ? f_angle_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.0903 ? 3 ? f_chiral_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.0078 ? 6 ? f_plane_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 19.2006 ? 4 ? f_dihedral_angle_d ? ?
#
_refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_ls_shell.d_res_high 0.90
_refine_ls_shell.d_res_low 5.78
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 112
_refine_ls_shell.number_reflns_R_work 1120
_refine_ls_shell.percent_reflns_obs 71.21
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.1851
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.1692
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_R_complete ?
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 8DDG
_struct.title 'FYF peptide forms a standard beta-sheet'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 8DDG
_struct_keywords.text 'Rippled beta-sheet, Racemic peptide, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 8DDG
_struct_ref.pdbx_db_accession 8DDG
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 8DDG
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 3
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 8DDG
_struct_ref_seq.db_align_beg 67
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 69
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 67
_struct_ref_seq.pdbx_auth_seq_align_end 69
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details pentameric
_pdbx_struct_assembly.oligomeric_count 5
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A
1 2 A
1 3 A
1 4 A
1 5 A
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 -4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 -9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_space_group_symop.id
_space_group_symop.operation_xyz
1 x,y,z
2 -x,y,-z
3 x+1/2,y+1/2,z
4 -x+1/2,y+1/2,-z
#
_em_3d_fitting.entry_id 8DDG
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space RECIPROCAL
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_reconstruction.entry_id 8DDG
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 4
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'FYF peptide'
_em_entity_assembly.source RECOMBINANT
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 8DDG
_em_imaging.accelerating_voltage 300
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI F30'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max 5000
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_experiment.entry_id 8DDG
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
PHE N N N N 1
PHE CA C N S 2
PHE C C N N 3
PHE O O N N 4
PHE CB C N N 5
PHE CG C Y N 6
PHE CD1 C Y N 7
PHE CD2 C Y N 8
PHE CE1 C Y N 9
PHE CE2 C Y N 10
PHE CZ C Y N 11
PHE OXT O N N 12
PHE H H N N 13
PHE H2 H N N 14
PHE HA H N N 15
PHE HB2 H N N 16
PHE HB3 H N N 17
PHE HD1 H N N 18
PHE HD2 H N N 19
PHE HE1 H N N 20
PHE HE2 H N N 21
PHE HZ H N N 22
PHE HXT H N N 23
TYR N N N N 24
TYR CA C N S 25
TYR C C N N 26
TYR O O N N 27
TYR CB C N N 28
TYR CG C Y N 29
TYR CD1 C Y N 30
TYR CD2 C Y N 31
TYR CE1 C Y N 32
TYR CE2 C Y N 33
TYR CZ C Y N 34
TYR OH O N N 35
TYR OXT O N N 36
TYR H H N N 37
TYR H2 H N N 38
TYR HA H N N 39
TYR HB2 H N N 40
TYR HB3 H N N 41
TYR HD1 H N N 42
TYR HD2 H N N 43
TYR HE1 H N N 44
TYR HE2 H N N 45
TYR HH H N N 46
TYR HXT H N N 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PHE N CA sing N N 1
PHE N H sing N N 2
PHE N H2 sing N N 3
PHE CA C sing N N 4
PHE CA CB sing N N 5
PHE CA HA sing N N 6
PHE C O doub N N 7
PHE C OXT sing N N 8
PHE CB CG sing N N 9
PHE CB HB2 sing N N 10
PHE CB HB3 sing N N 11
PHE CG CD1 doub Y N 12
PHE CG CD2 sing Y N 13
PHE CD1 CE1 sing Y N 14
PHE CD1 HD1 sing N N 15
PHE CD2 CE2 doub Y N 16
PHE CD2 HD2 sing N N 17
PHE CE1 CZ doub Y N 18
PHE CE1 HE1 sing N N 19
PHE CE2 CZ sing Y N 20
PHE CE2 HE2 sing N N 21
PHE CZ HZ sing N N 22
PHE OXT HXT sing N N 23
TYR N CA sing N N 24
TYR N H sing N N 25
TYR N H2 sing N N 26
TYR CA C sing N N 27
TYR CA CB sing N N 28
TYR CA HA sing N N 29
TYR C O doub N N 30
TYR C OXT sing N N 31
TYR CB CG sing N N 32
TYR CB HB2 sing N N 33
TYR CB HB3 sing N N 34
TYR CG CD1 doub Y N 35
TYR CG CD2 sing Y N 36
TYR CD1 CE1 sing Y N 37
TYR CD1 HD1 sing N N 38
TYR CD2 CE2 doub Y N 39
TYR CD2 HD2 sing N N 40
TYR CE1 CZ doub Y N 41
TYR CE1 HE1 sing N N 42
TYR CE2 CZ sing Y N 43
TYR CE2 HE2 sing N N 44
TYR CZ OH sing N N 45
TYR OH HH sing N N 46
TYR OXT HXT sing N N 47
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 107.05
_em_3d_crystal_entity.angle_gamma 90
_em_3d_crystal_entity.length_a 23.140
_em_3d_crystal_entity.length_b 4.840
_em_3d_crystal_entity.length_c 19.790
_em_3d_crystal_entity.space_group_name C2
_em_3d_crystal_entity.space_group_num 5
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1320
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 72.2
_em_diffraction_shell.high_resolution 0.9
_em_diffraction_shell.low_resolution 1
_em_diffraction_shell.multiplicity 4.9
_em_diffraction_shell.num_structure_factors 332
_em_diffraction_shell.phase_residual 13.5
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details ?
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 71.0
_em_diffraction_stats.high_resolution 0.9
_em_diffraction_stats.num_intensities_measured 5980
_em_diffraction_stats.num_structure_factors 1237
_em_diffraction_stats.overall_phase_error ?
_em_diffraction_stats.overall_phase_residual ?
_em_diffraction_stats.phase_error_rejection_criteria 20
_em_diffraction_stats.r_merge 0.113
_em_diffraction_stats.r_sym ?
#
_em_entity_assembly_naturalsource.id 2
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 32644
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism unidentified
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_entity_assembly_recombinant.id 2
_em_entity_assembly_recombinant.entity_assembly_id 1
_em_entity_assembly_recombinant.cell ?
_em_entity_assembly_recombinant.ncbi_tax_id 32644
_em_entity_assembly_recombinant.organism unidentified
_em_entity_assembly_recombinant.plasmid ?
_em_entity_assembly_recombinant.strain ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.0192
_em_image_recording.average_exposure_time 3
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
_em_image_recording.avg_electron_dose_per_subtomogram ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? ? ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
12 RECONSTRUCTION ? ? ? 1 ? ?
13 'MODEL REFINEMENT' ? ? ? ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details crystal
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied NO
#
_pdbx_audit_support.funding_organization 'Not funded'
_pdbx_audit_support.country ?
_pdbx_audit_support.grant_number ?
_pdbx_audit_support.ordinal 1
#
_space_group.name_H-M_alt 'C 1 2 1'
_space_group.name_Hall 'C 2y'
_space_group.IT_number 5
_space_group.crystal_system monoclinic
_space_group.id 1
#
_atom_sites.entry_id 8DDG
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.043215
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.013252
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.206612
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.052853
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
_atom_type.scat_dispersion_real
_atom_type.scat_dispersion_imag
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_a3
_atom_type.scat_Cromer_Mann_a4
_atom_type.pdbx_scat_Cromer_Mann_a5
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_b3
_atom_type.scat_Cromer_Mann_b4
_atom_type.pdbx_scat_Cromer_Mann_b5
_atom_type.scat_Cromer_Mann_c
_atom_type.scat_source
_atom_type.scat_dispersion_source
C ? ? 0.08930 0.25630 0.75700 1.04870 0.35750 0.24650 1.71000 6.40940 18.61130 50.25230 0.0
;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
H ? ? 0.03490 0.12010 0.19700 0.05730 0.11950 0.53470 3.58670 12.34710 18.95250 38.62690 0.0
;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
N ? ? 0.10220 0.32190 0.79820 0.81970 0.17150 0.24510 1.74810 6.19250 17.38940 48.14310 0.0
;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
O ? ? 0.09740 0.29210 0.69100 0.69900 0.20390 0.20670 1.38150 4.69430 12.71050 32.47260 0.0
;5-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . PHE A 1 1 ? 11.80348 3.94046 5.90951 1.000 3.25491 ? 67 PHE A N 1
ATOM 2 C CA . PHE A 1 1 ? 10.56644 4.72076 5.73682 1.000 2.88207 ? 67 PHE A CA 1
ATOM 3 C C . PHE A 1 1 ? 9.41053 3.84589 6.05664 1.000 2.55919 ? 67 PHE A C 1
ATOM 4 O O . PHE A 1 1 ? 9.52946 2.64151 6.19699 1.000 3.33104 ? 67 PHE A O 1
ATOM 5 C CB . PHE A 1 1 ? 10.42695 5.20378 4.30235 1.000 3.09064 ? 67 PHE A CB 1
ATOM 6 C CG . PHE A 1 1 ? 10.16577 4.12411 3.32124 1.000 2.89990 ? 67 PHE A CG 1
ATOM 7 C CD1 . PHE A 1 1 ? 8.88269 3.63123 3.10753 1.000 2.84982 ? 67 PHE A CD1 1
ATOM 8 C CD2 . PHE A 1 1 ? 11.19907 3.60949 2.58687 1.000 3.19820 ? 67 PHE A CD2 1
ATOM 9 C CE1 . PHE A 1 1 ? 8.65157 2.62256 2.20368 1.000 3.11815 ? 67 PHE A CE1 1
ATOM 10 C CE2 . PHE A 1 1 ? 10.96774 2.62488 1.66904 1.000 3.67156 ? 67 PHE A CE2 1
ATOM 11 C CZ . PHE A 1 1 ? 9.68870 2.13159 1.47305 1.000 3.60915 ? 67 PHE A CZ 1
ATOM 12 H H1 . PHE A 1 1 ? 12.49765 4.41738 5.62180 1.000 3.98494 ? 67 PHE A H1 1
ATOM 13 H H2 . PHE A 1 1 ? 11.74657 3.18646 5.44011 1.000 3.98494 ? 67 PHE A H2 1
ATOM 14 H H3 . PHE A 1 1 ? 11.91374 3.74602 6.77098 1.000 3.98494 ? 67 PHE A H3 1
ATOM 15 H HA . PHE A 1 1 ? 10.58242 5.49915 6.31540 1.000 3.53754 ? 67 PHE A HA 1
ATOM 16 H HB2 . PHE A 1 1 ? 9.68670 5.82891 4.25604 1.000 3.78781 ? 67 PHE A HB2 1
ATOM 17 H HB3 . PHE A 1 1 ? 11.25061 5.64506 4.04205 1.000 3.78781 ? 67 PHE A HB3 1
ATOM 18 H HD1 . PHE A 1 1 ? 8.16952 3.99037 3.58431 1.000 3.49883 ? 67 PHE A HD1 1
ATOM 19 H HD2 . PHE A 1 1 ? 12.06239 3.93139 2.71315 1.000 3.91689 ? 67 PHE A HD2 1
ATOM 20 H HE1 . PHE A 1 1 ? 7.79459 2.27888 2.09249 1.000 3.82083 ? 67 PHE A HE1 1
ATOM 21 H HE2 . PHE A 1 1 ? 11.67512 2.28285 1.17152 1.000 4.48491 ? 67 PHE A HE2 1
ATOM 22 H HZ . PHE A 1 1 ? 9.53883 1.46492 0.84219 1.000 4.41002 ? 67 PHE A HZ 1
ATOM 23 N N . TYR A 1 2 ? 8.25907 4.46589 6.12456 1.000 3.11217 ? 68 TYR A N 1
ATOM 24 C CA . TYR A 1 2 ? 7.04750 3.68414 6.11211 1.000 2.82306 ? 68 TYR A CA 1
ATOM 25 C C . TYR A 1 2 ? 5.95180 4.57935 5.61329 1.000 3.52131 ? 68 TYR A C 1
ATOM 26 O O . TYR A 1 2 ? 6.11039 5.79326 5.50481 1.000 2.68999 ? 68 TYR A O 1
ATOM 27 C CB . TYR A 1 2 ? 6.70767 3.15262 7.48308 1.000 2.57773 ? 68 TYR A CB 1
ATOM 28 C CG . TYR A 1 2 ? 6.17769 4.13935 8.45471 1.000 2.66531 ? 68 TYR A CG 1
ATOM 29 C CD1 . TYR A 1 2 ? 7.01242 5.06564 9.06273 1.000 2.98297 ? 68 TYR A CD1 1
ATOM 30 C CD2 . TYR A 1 2 ? 4.85150 4.11606 8.81057 1.000 3.48383 ? 68 TYR A CD2 1
ATOM 31 C CE1 . TYR A 1 2 ? 6.52937 5.93548 9.98194 1.000 3.01866 ? 68 TYR A CE1 1
ATOM 32 C CE2 . TYR A 1 2 ? 4.36589 4.97330 9.71411 1.000 4.14886 ? 68 TYR A CE2 1
ATOM 33 C CZ . TYR A 1 2 ? 5.20147 5.88989 10.29969 1.000 3.30991 ? 68 TYR A CZ 1
ATOM 34 O OH . TYR A 1 2 ? 4.69494 6.75043 11.22359 1.000 3.65105 ? 68 TYR A OH 1
ATOM 35 H H . TYR A 1 2 ? 8.15361 5.31777 6.17731 1.000 3.81365 ? 68 TYR A H 1
ATOM 36 H HA . TYR A 1 2 ? 7.15425 2.92678 5.51553 1.000 3.46672 ? 68 TYR A HA 1
ATOM 37 H HB2 . TYR A 1 2 ? 6.03419 2.46200 7.38123 1.000 3.17232 ? 68 TYR A HB2 1
ATOM 38 H HB3 . TYR A 1 2 ? 7.51356 2.77571 7.86956 1.000 3.17232 ? 68 TYR A HB3 1
ATOM 39 H HD1 . TYR A 1 2 ? 7.91419 5.08970 8.83660 1.000 3.65861 ? 68 TYR A HD1 1
ATOM 40 H HD2 . TYR A 1 2 ? 4.28260 3.49448 8.41700 1.000 4.25964 ? 68 TYR A HD2 1
ATOM 41 H HE1 . TYR A 1 2 ? 7.09221 6.55330 10.38986 1.000 3.70144 ? 68 TYR A HE1 1
ATOM 42 H HE2 . TYR A 1 2 ? 3.46527 4.94829 9.94467 1.000 5.05768 ? 68 TYR A HE2 1
ATOM 43 H HH . TYR A 1 2 ? 5.23521 6.83858 11.86072 1.000 4.46031 ? 68 TYR A HH 1
ATOM 44 N N . PHE A 1 3 ? 4.83830 3.95955 5.31174 1.000 2.90688 ? 69 PHE A N 1
ATOM 45 C CA . PHE A 1 3 ? 3.69245 4.73208 4.96725 1.000 4.01540 ? 69 PHE A CA 1
ATOM 46 C C . PHE A 1 3 ? 2.46306 3.94382 5.27000 1.000 3.52789 ? 69 PHE A C 1
ATOM 47 O O . PHE A 1 3 ? 1.40366 4.34662 4.81857 1.000 4.56006 ? 69 PHE A O 1
ATOM 48 C CB . PHE A 1 3 ? 3.73549 5.15920 3.51883 1.000 3.66868 ? 69 PHE A CB 1
ATOM 49 C CG . PHE A 1 3 ? 3.78682 4.03970 2.53647 1.000 3.00484 ? 69 PHE A CG 1
ATOM 50 C CD1 . PHE A 1 3 ? 2.63590 3.44575 2.07738 1.000 2.60653 ? 69 PHE A CD1 1
ATOM 51 C CD2 . PHE A 1 3 ? 4.98863 3.61440 2.03272 1.000 2.90705 ? 69 PHE A CD2 1
ATOM 52 C CE1 . PHE A 1 3 ? 2.68690 2.45265 1.14844 1.000 2.86973 ? 69 PHE A CE1 1
ATOM 53 C CE2 . PHE A 1 3 ? 5.03719 2.61930 1.10086 1.000 3.58431 ? 69 PHE A CE2 1
ATOM 54 C CZ . PHE A 1 3 ? 3.87808 2.03409 0.65633 1.000 3.50494 ? 69 PHE A CZ 1
ATOM 55 O OXT . PHE A 1 3 ? 2.52253 2.94305 5.98259 1.000 4.40432 ? 69 PHE A OXT 1
ATOM 56 H H . PHE A 1 3 ? 4.72964 3.10650 5.30153 1.000 3.56730 ? 69 PHE A H 1
ATOM 57 H HA . PHE A 1 3 ? 3.67066 5.55205 5.48501 1.000 4.89753 ? 69 PHE A HA 1
ATOM 58 H HB2 . PHE A 1 3 ? 2.93875 5.67833 3.32747 1.000 4.48147 ? 69 PHE A HB2 1
ATOM 59 H HB3 . PHE A 1 3 ? 4.52678 5.70330 3.38202 1.000 4.48147 ? 69 PHE A HB3 1
ATOM 60 H HD1 . PHE A 1 3 ? 1.81204 3.72588 2.40553 1.000 3.20689 ? 69 PHE A HD1 1
ATOM 61 H HD2 . PHE A 1 3 ? 5.77769 4.00764 2.32877 1.000 3.56750 ? 69 PHE A HD2 1
ATOM 62 H HE1 . PHE A 1 3 ? 1.89929 2.05873 0.84943 1.000 3.52272 ? 69 PHE A HE1 1
ATOM 63 H HE2 . PHE A 1 3 ? 5.85757 2.33682 0.76607 1.000 4.38022 ? 69 PHE A HE2 1
ATOM 64 H HZ . PHE A 1 3 ? 3.90993 1.35497 0.02176 1.000 4.28497 ? 69 PHE A HZ 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . PHE A 1 ? 0.02199 0.02264 0.07904 0.00126 -0.00825 0.00110 67 PHE A N
2 C CA . PHE A 1 ? 0.01735 0.02037 0.07178 0.00199 -0.00650 -0.01028 67 PHE A CA
3 C C . PHE A 1 ? 0.01534 0.01629 0.06560 0.00100 -0.00750 -0.00018 67 PHE A C
4 O O . PHE A 1 ? 0.02134 0.03285 0.07237 -0.00618 -0.00576 0.00298 67 PHE A O
5 C CB . PHE A 1 ? 0.02046 0.03115 0.06582 -0.00154 -0.00888 -0.01128 67 PHE A CB
6 C CG . PHE A 1 ? 0.02122 0.02685 0.06211 0.00781 -0.00364 -0.00211 67 PHE A CG
7 C CD1 . PHE A 1 ? 0.02269 0.03092 0.05468 0.00383 -0.00584 -0.02252 67 PHE A CD1
8 C CD2 . PHE A 1 ? 0.01819 0.04361 0.05971 0.00346 -0.00654 0.00786 67 PHE A CD2
9 C CE1 . PHE A 1 ? 0.03225 0.04012 0.04610 0.00112 -0.01333 -0.00663 67 PHE A CE1
10 C CE2 . PHE A 1 ? 0.03647 0.04545 0.05758 0.02153 0.00211 0.01233 67 PHE A CE2
11 C CZ . PHE A 1 ? 0.04241 0.04555 0.04917 0.01432 -0.01262 0.01721 67 PHE A CZ
23 N N . TYR A 2 ? 0.01940 0.02163 0.07721 0.00036 -0.00088 -0.00277 68 TYR A N
24 C CA . TYR A 2 ? 0.01890 0.01629 0.07207 0.00170 -0.00747 -0.00429 68 TYR A CA
25 C C . TYR A 2 ? 0.02182 0.03979 0.07218 0.00684 -0.00839 -0.00093 68 TYR A C
26 O O . TYR A 2 ? 0.01827 0.01913 0.06481 -0.00031 -0.00473 -0.00817 68 TYR A O
27 C CB . TYR A 2 ? 0.01664 0.01541 0.06589 0.00064 -0.00037 -0.00783 68 TYR A CB
28 C CG . TYR A 2 ? 0.01809 0.02746 0.05572 -0.00744 -0.00107 0.00202 68 TYR A CG
29 C CD1 . TYR A 2 ? 0.01704 0.04859 0.04771 0.00087 -0.01126 -0.00300 68 TYR A CD1
30 C CD2 . TYR A 2 ? 0.02129 0.05101 0.06007 -0.01180 0.00010 -0.01016 68 TYR A CD2
31 C CE1 . TYR A 2 ? 0.02421 0.04318 0.04730 -0.00628 -0.00931 0.00700 68 TYR A CE1
32 C CE2 . TYR A 2 ? 0.02648 0.07073 0.06043 -0.01155 0.00071 -0.02350 68 TYR A CE2
33 C CZ . TYR A 2 ? 0.02628 0.04444 0.05505 -0.01049 0.00233 -0.00432 68 TYR A CZ
34 O OH . TYR A 2 ? 0.03786 0.04329 0.05757 -0.00118 0.00425 0.00069 68 TYR A OH
44 N N . PHE A 3 ? 0.01916 0.01763 0.07366 0.00010 -0.00573 -0.00606 69 PHE A N
45 C CA . PHE A 3 ? 0.02224 0.04793 0.08239 0.00028 -0.00508 -0.01307 69 PHE A CA
46 C C . PHE A 3 ? 0.02223 0.02882 0.08299 0.00179 -0.00364 -0.01497 69 PHE A C
47 O O . PHE A 3 ? 0.02808 0.06028 0.08491 0.00986 -0.01130 -0.01931 69 PHE A O
48 C CB . PHE A 3 ? 0.02378 0.04016 0.07545 0.00090 -0.00191 -0.03258 69 PHE A CB
49 C CG . PHE A 3 ? 0.01878 0.02423 0.07116 0.00204 -0.00414 -0.00396 69 PHE A CG
50 C CD1 . PHE A 3 ? 0.01833 0.02226 0.05844 -0.00129 -0.00946 -0.00534 69 PHE A CD1
51 C CD2 . PHE A 3 ? 0.01844 0.02575 0.06627 -0.00305 0.00174 0.00771 69 PHE A CD2
52 C CE1 . PHE A 3 ? 0.01950 0.02990 0.05963 -0.00344 -0.01185 0.00391 69 PHE A CE1
53 C CE2 . PHE A 3 ? 0.02187 0.04141 0.07290 -0.00771 -0.00476 0.01002 69 PHE A CE2
54 C CZ . PHE A 3 ? 0.02465 0.04676 0.06176 -0.01360 -0.01031 0.00204 69 PHE A CZ
55 O OXT . PHE A 3 ? 0.02210 0.06964 0.07561 0.01241 -0.00077 0.00154 69 PHE A OXT
#