data_7YGP
#
_entry.id 7YGP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7YGP pdb_00007ygp 10.2210/pdb7ygp/pdb
WWPDB D_1300030886 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2023-05-24
2 'Structure model' 1 1 2024-05-29
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_audit_revision_group.ordinal 1
_pdbx_audit_revision_group.revision_ordinal 2
_pdbx_audit_revision_group.data_content_type 'Structure model'
_pdbx_audit_revision_group.group 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7YGP
_pdbx_database_status.recvd_initial_deposition_date 2022-07-12
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email j.kondo@sophia.ac.jp
_pdbx_contact_author.name_first Jiro
_pdbx_contact_author.name_last Kondo
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Kondo, J.' 1 0000-0002-5682-3685
'Torigoe, H.' 2 ?
'Arakawa, F.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev J.Inorg.Biochem.
_citation.journal_id_ASTM JIBIDJ
_citation.journal_id_CSD 0525
_citation.journal_id_ISSN 0162-0134
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 241
_citation.language ?
_citation.page_first 112125
_citation.page_last 112125
_citation.title 'Specific binding of Hg 2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA.'
_citation.year 2023
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1016/j.jinorgbio.2023.112125
_citation.pdbx_database_id_PubMed 36716510
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Torigoe, H.' 1 ?
primary 'Kondo, J.' 2 ?
primary 'Arakawa, F.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*GP*AP*CP*CP*TP*(OHU)P*GP*GP*TP*CP*C)-3')
;
3656.351 1 ? ? ? ?
2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ?
3 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DC)(DC)(DT)(OHU)(DG)(DG)(DT)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGACCTXGGTCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'COBALT HEXAMMINE(III)' NCO
3 'COBALT (II) ION' CO
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DA n
1 4 DC n
1 5 DC n
1 6 DT n
1 7 OHU n
1 8 DG n
1 9 DG n
1 10 DT n
1 11 DC n
1 12 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 12
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116
OHU 'DNA linking' n
;2'-deoxy-5-hydroxyuridine 5'-(dihydrogen phosphate)
;
? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DT 6 6 6 DT DT A . n
A 1 7 OHU 7 7 7 OHU 6HU A . n
A 1 8 DG 8 8 8 DG DG A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DT 10 10 10 DT DT A . n
A 1 11 DC 11 11 11 DC DC A . n
A 1 12 DC 12 12 12 DC DC A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NCO 1 101 51 NCO NCO A .
C 3 CO 1 102 1 CO CO A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 7YGP
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 36.672
_cell.length_a_esd ?
_cell.length_b 36.672
_cell.length_b_esd ?
_cell.length_c 54.990
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 7YGP
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7YGP
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.92
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 57.87
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'MPD, lithium chloride, hexammine cobalt chloride, Sodium cacodylate'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2018-03-15
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.00835
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.00835
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL-17A
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
#
_reflns.B_iso_Wilson_estimate 59.170
_reflns.entry_id 7YGP
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.9970
_reflns.d_resolution_low 20.787
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 5348
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 95.100
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 2.655
_reflns.pdbx_Rmerge_I_obs 0.026
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 17.440
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.987
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.032
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.999
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
_reflns.pdbx_CC_split_method ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
2.000 2.050 ? 2.070 ? 1127 449 ? 417 92.900 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 2.703 ? ? ? ? 0.486 ? ? 1 1 0.842 ? ? ? ? ? ? ? ? ? ?
2.050 2.110 ? 3.100 ? 1029 398 ? 380 95.500 ? ? ? ? 0.279 ? ? ? ? ? ? ? ? 2.708 ? ? ? ? 0.342 ? ? 2 1 0.927 ? ? ? ? ? ? ? ? ? ?
2.110 2.170 ? 3.500 ? 959 371 ? 346 93.300 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 2.772 ? ? ? ? 0.305 ? ? 3 1 0.964 ? ? ? ? ? ? ? ? ? ?
2.170 2.230 ? 4.500 ? 978 392 ? 369 94.100 ? ? ? ? 0.156 ? ? ? ? ? ? ? ? 2.650 ? ? ? ? 0.190 ? ? 4 1 0.987 ? ? ? ? ? ? ? ? ? ?
2.230 2.310 ? 6.680 ? 932 378 ? 352 93.100 ? ? ? ? 0.113 ? ? ? ? ? ? ? ? 2.648 ? ? ? ? 0.138 ? ? 5 1 0.989 ? ? ? ? ? ? ? ? ? ?
2.310 2.390 ? 8.530 ? 861 346 ? 336 97.100 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 2.562 ? ? ? ? 0.102 ? ? 6 1 0.995 ? ? ? ? ? ? ? ? ? ?
2.390 2.480 ? 11.040 ? 964 363 ? 350 96.400 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 2.754 ? ? ? ? 0.078 ? ? 7 1 0.997 ? ? ? ? ? ? ? ? ? ?
2.480 2.580 ? 16.460 ? 799 300 ? 290 96.700 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 2.755 ? ? ? ? 0.058 ? ? 8 1 0.997 ? ? ? ? ? ? ? ? ? ?
2.580 2.700 ? 17.460 ? 921 342 ? 328 95.900 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 2.808 ? ? ? ? 0.047 ? ? 9 1 0.999 ? ? ? ? ? ? ? ? ? ?
2.700 2.830 ? 21.500 ? 799 310 ? 299 96.500 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 2.672 ? ? ? ? 0.047 ? ? 10 1 0.998 ? ? ? ? ? ? ? ? ? ?
2.830 2.980 ? 25.440 ? 686 271 ? 261 96.300 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 2.628 ? ? ? ? 0.042 ? ? 11 1 0.998 ? ? ? ? ? ? ? ? ? ?
2.980 3.160 ? 29.490 ? 688 283 ? 273 96.500 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 2.520 ? ? ? ? 0.028 ? ? 12 1 0.999 ? ? ? ? ? ? ? ? ? ?
3.160 3.380 ? 32.450 ? 600 255 ? 244 95.700 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 2.459 ? ? ? ? 0.029 ? ? 13 1 0.999 ? ? ? ? ? ? ? ? ? ?
3.380 3.650 ? 34.750 ? 606 255 ? 240 94.100 ? ? ? ? 0.023 ? ? ? ? ? ? ? ? 2.525 ? ? ? ? 0.028 ? ? 14 1 0.999 ? ? ? ? ? ? ? ? ? ?
3.650 4.000 ? 35.720 ? 557 216 ? 208 96.300 ? ? ? ? 0.021 ? ? ? ? ? ? ? ? 2.678 ? ? ? ? 0.025 ? ? 15 1 0.999 ? ? ? ? ? ? ? ? ? ?
4.000 4.470 ? 37.360 ? 494 192 ? 182 94.800 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 2.714 ? ? ? ? 0.030 ? ? 16 1 0.998 ? ? ? ? ? ? ? ? ? ?
4.470 5.160 ? 36.610 ? 435 176 ? 169 96.000 ? ? ? ? 0.021 ? ? ? ? ? ? ? ? 2.574 ? ? ? ? 0.026 ? ? 17 1 0.998 ? ? ? ? ? ? ? ? ? ?
5.160 6.320 ? 36.030 ? 348 150 ? 142 94.700 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 2.451 ? ? ? ? 0.031 ? ? 18 1 0.998 ? ? ? ? ? ? ? ? ? ?
6.320 8.940 ? 36.040 ? 274 114 ? 108 94.700 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? 2.537 ? ? ? ? 0.037 ? ? 19 1 0.996 ? ? ? ? ? ? ? ? ? ?
8.940 20.787 ? 36.940 ? 140 65 ? 54 83.100 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 2.593 ? ? ? ? 0.032 ? ? 20 1 0.998 ? ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 108.240
_refine.B_iso_mean 60.4473
_refine.B_iso_min 47.660
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7YGP
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.9970
_refine.ls_d_res_low 20.7870
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 5336
_refine.ls_number_reflns_R_free 529
_refine.ls_number_reflns_R_work 4807
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 94.8300
_refine.ls_percent_reflns_R_free 9.9100
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2194
_refine.ls_R_factor_R_free 0.2254
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2186
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.380
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 41.6300
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.3500
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 1.9970
_refine_hist.d_res_low 20.7870
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 250
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 12
_refine_hist.pdbx_B_iso_mean_ligand 85.42
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 242
_refine_hist.pdbx_number_atoms_ligand 8
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.008 ? 276 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.153 ? 430 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.045 ? 46 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.005 ? 12 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 19.079 ? 110 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.9970 2.1974 . . 136 1184 93.0000 . . . 0.5147 0.0000 0.4347 . . . . . . . . . . .
'X-RAY DIFFRACTION' 2.1974 2.5149 . . 129 1186 95.0000 . . . 0.3901 0.0000 0.3602 . . . . . . . . . . .
'X-RAY DIFFRACTION' 2.5149 3.1667 . . 136 1218 96.0000 . . . 0.3272 0.0000 0.2924 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.1667 20.7870 . . 128 1219 95.0000 . . . 0.1691 0.0000 0.1681 . . . . . . . . . . .
#
_struct.entry_id 7YGP
_struct.title 'DNA duplex containing 5OHU-T base pairs'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7YGP
_struct_keywords.text 'DNA, metal-mediated base pair, metallo-DNA, mercury'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7YGP
_struct_ref.pdbx_db_accession 7YGP
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7YGP
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 12
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 7YGP
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 12
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1880 ?
1 MORE -25 ?
1 'SSA (A^2)' 4400 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 55.0080000000 -0.8660254038
0.5000000000 0.0000000000 31.7588836076 0.0000000000 0.0000000000 -1.0000000000 18.3300000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 6 "O3'" ? ? ? 1_555 A OHU 7 P ? ? A DT 6 A OHU 7 1_555 ? ? ? ? ? ? ? 1.623 ? ?
covale2 covale one ? A OHU 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A OHU 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.620 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 1 A DC 12 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 1 A DC 12 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 1 A DC 12 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 2 A DC 11 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 2 A DC 11 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 2 A DC 11 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 3 A DT 10 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 3 A DT 10 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 4 A DG 9 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 4 A DG 9 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A OHU 7 O4 ? ? A DT 6 A OHU 7 6_765 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog16 hydrog ? ? A DT 6 O2 ? ? ? 1_555 A OHU 7 N3 ? ? A DT 6 A OHU 7 6_765 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog17 hydrog ? ? A OHU 7 N3 ? ? ? 1_555 A DT 6 O2 ? ? A OHU 7 A DT 6 6_765 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog18 hydrog ? ? A OHU 7 O4 ? ? ? 1_555 A DT 6 N3 ? ? A OHU 7 A DT 6 6_765 ? ? ? ? ? ? TYPE_16_PAIR ? ? ?
hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 8 A DC 5 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 8 A DC 5 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 8 A DC 5 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 9 A DC 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 9 A DC 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 9 A DC 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 10 A DA 3 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 10 A DA 3 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 12 A DG 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 12 A DG 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 12 A DG 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_entry_details.entry_id 7YGP
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CO CO CO N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
NCO CO CO N N 145
NCO N1 N N N 146
NCO N2 N N N 147
NCO N3 N N N 148
NCO N4 N N N 149
NCO N5 N N N 150
NCO N6 N N N 151
NCO HN11 H N N 152
NCO HN12 H N N 153
NCO HN13 H N N 154
NCO HN21 H N N 155
NCO HN22 H N N 156
NCO HN23 H N N 157
NCO HN31 H N N 158
NCO HN32 H N N 159
NCO HN33 H N N 160
NCO HN41 H N N 161
NCO HN42 H N N 162
NCO HN43 H N N 163
NCO HN51 H N N 164
NCO HN52 H N N 165
NCO HN53 H N N 166
NCO HN61 H N N 167
NCO HN62 H N N 168
NCO HN63 H N N 169
OHU P P N N 170
OHU N1 N N N 171
OHU C2 C N N 172
OHU O2 O N N 173
OHU N3 N N N 174
OHU C4 C N N 175
OHU O4 O N N 176
OHU C5 C N N 177
OHU O5 O N N 178
OHU C6 C N N 179
OHU "C1'" C N R 180
OHU "C2'" C N N 181
OHU "C3'" C N S 182
OHU "O3'" O N N 183
OHU "C4'" C N R 184
OHU "O4'" O N N 185
OHU "C5'" C N N 186
OHU "O5'" O N N 187
OHU OP1 O N N 188
OHU OP2 O N N 189
OHU OP3 O N N 190
OHU HN3 H N N 191
OHU HO5 H N N 192
OHU H6 H N N 193
OHU "H1'" H N N 194
OHU "H2'" H N N 195
OHU "H2'A" H N N 196
OHU "H3'" H N N 197
OHU "HO3'" H N N 198
OHU "H4'" H N N 199
OHU "H5'" H N N 200
OHU "H5'A" H N N 201
OHU HOP2 H N N 202
OHU HOP3 H N N 203
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
NCO CO N1 sing N N 150
NCO CO N2 sing N N 151
NCO CO N3 sing N N 152
NCO CO N4 sing N N 153
NCO CO N5 sing N N 154
NCO CO N6 sing N N 155
NCO N1 HN11 sing N N 156
NCO N1 HN12 sing N N 157
NCO N1 HN13 sing N N 158
NCO N2 HN21 sing N N 159
NCO N2 HN22 sing N N 160
NCO N2 HN23 sing N N 161
NCO N3 HN31 sing N N 162
NCO N3 HN32 sing N N 163
NCO N3 HN33 sing N N 164
NCO N4 HN41 sing N N 165
NCO N4 HN42 sing N N 166
NCO N4 HN43 sing N N 167
NCO N5 HN51 sing N N 168
NCO N5 HN52 sing N N 169
NCO N5 HN53 sing N N 170
NCO N6 HN61 sing N N 171
NCO N6 HN62 sing N N 172
NCO N6 HN63 sing N N 173
OHU P "O5'" sing N N 174
OHU P OP1 doub N N 175
OHU P OP2 sing N N 176
OHU P OP3 sing N N 177
OHU N1 C2 sing N N 178
OHU N1 C6 sing N N 179
OHU N1 "C1'" sing N N 180
OHU C2 O2 doub N N 181
OHU C2 N3 sing N N 182
OHU N3 C4 sing N N 183
OHU C4 O4 doub N N 184
OHU C4 C5 sing N N 185
OHU C5 O5 sing N N 186
OHU C5 C6 doub N N 187
OHU "C1'" "C2'" sing N N 188
OHU "C1'" "O4'" sing N N 189
OHU "C2'" "C3'" sing N N 190
OHU "C3'" "O3'" sing N N 191
OHU "C3'" "C4'" sing N N 192
OHU "C4'" "O4'" sing N N 193
OHU "C4'" "C5'" sing N N 194
OHU "C5'" "O5'" sing N N 195
OHU N3 HN3 sing N N 196
OHU O5 HO5 sing N N 197
OHU C6 H6 sing N N 198
OHU "C1'" "H1'" sing N N 199
OHU "C2'" "H2'" sing N N 200
OHU "C2'" "H2'A" sing N N 201
OHU "C3'" "H3'" sing N N 202
OHU "O3'" "HO3'" sing N N 203
OHU "C4'" "H4'" sing N N 204
OHU "C5'" "H5'" sing N N 205
OHU "C5'" "H5'A" sing N N 206
OHU OP2 HOP2 sing N N 207
OHU OP3 HOP3 sing N N 208
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
7YGP 'double helix'
7YGP 'a-form double helix'
7YGP 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 12 6_765 -0.179 -0.268 0.373 -1.409 -8.084 0.065 1 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 1_555 A DC 11 6_765 -0.257 -0.186 -0.218 -12.438 -12.325 2.422 2 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 1_555 A DT 10 6_765 0.221 -0.243 -0.267 -8.241 -7.672 -3.740 3 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 1_555 A DG 9 6_765 0.281 -0.129 0.019 5.974 -10.854 3.092 4 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 1_555 A DG 8 6_765 0.327 -0.253 -0.154 9.413 -3.358 2.301 5 A_DC5:DG8_A A 5 ? A 8 ? 19 1
1 A DT 6 1_555 A OHU 7 6_765 1.552 -2.254 -0.269 -0.055 -23.664 3.303 6 A_DT6:OHU7_A A 6 ? A 7 ? 16 1
1 A OHU 7 1_555 A DT 6 6_765 -1.552 -2.254 -0.269 0.055 -23.664 3.303 7 A_OHU7:DT6_A A 7 ? A 6 ? 16 1
1 A DG 8 1_555 A DC 5 6_765 -0.327 -0.253 -0.154 -9.413 -3.358 2.301 8 A_DG8:DC5_A A 8 ? A 5 ? 19 1
1 A DG 9 1_555 A DC 4 6_765 -0.281 -0.129 0.019 -5.974 -10.854 3.092 9 A_DG9:DC4_A A 9 ? A 4 ? 19 1
1 A DT 10 1_555 A DA 3 6_765 -0.221 -0.243 -0.267 8.241 -7.672 -3.740 10 A_DT10:DA3_A A 10 ? A 3 ? 20 1
1 A DC 11 1_555 A DG 2 6_765 0.257 -0.186 -0.218 12.438 -12.325 2.422 11 A_DC11:DG2_A A 11 ? A 2 ? 19 1
1 A DC 12 1_555 A DG 1 6_765 0.179 -0.268 0.373 1.409 -8.084 0.065 12 A_DC12:DG1_A A 12 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 12 6_765 A DG 2 1_555 A DC 11 6_765 0.063 -1.148 3.469 5.164 4.975 37.845 -2.383 0.572 3.277 7.587
-7.875 38.494 1 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 1_555 A DC 11 6_765 A DA 3 1_555 A DT 10 6_765 -0.304 -0.747 3.210 1.146 4.035 35.310 -1.792 0.659 3.098 6.624
-1.881 35.551 2 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 1_555 A DT 10 6_765 A DC 4 1_555 A DG 9 6_765 0.831 -1.179 2.967 -2.376 12.535 31.151 -3.748 -1.762 2.270 22.210
4.210 33.603 3 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 1_555 A DG 9 6_765 A DC 5 1_555 A DG 8 6_765 -0.550 -1.866 3.140 -2.511 7.511 26.096 -5.633 0.609 2.553 16.167
5.404 27.251 4 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
1 A DC 5 1_555 A DG 8 6_765 A DT 6 1_555 A OHU 7 6_765 0.285 -0.855 3.459 6.458 12.855 41.348 -2.419 0.255 3.083 17.578
-8.831 43.676 5 AA_DC5DT6:OHU7DG8_AA A 5 ? A 8 ? A 6 ? A 7 ?
1 A DT 6 1_555 A OHU 7 6_765 A OHU 7 1_555 A DT 6 6_765 0.000 -2.157 3.064 0.000 15.926 17.197 -9.025 0.000 0.802 43.094
0.000 23.398 6 AA_DT6OHU7:DT6OHU7_AA A 6 ? A 7 ? A 7 ? A 6 ?
1 A OHU 7 1_555 A DT 6 6_765 A DG 8 1_555 A DC 5 6_765 -0.285 -0.855 3.459 -6.458 12.855 41.348 -2.419 -0.255 3.083 17.578
8.831 43.676 7 AA_OHU7DG8:DC5DT6_AA A 7 ? A 6 ? A 8 ? A 5 ?
1 A DG 8 1_555 A DC 5 6_765 A DG 9 1_555 A DC 4 6_765 0.550 -1.866 3.140 2.511 7.511 26.096 -5.633 -0.609 2.553 16.167
-5.404 27.251 8 AA_DG8DG9:DC4DC5_AA A 8 ? A 5 ? A 9 ? A 4 ?
1 A DG 9 1_555 A DC 4 6_765 A DT 10 1_555 A DA 3 6_765 -0.831 -1.179 2.967 2.376 12.535 31.151 -3.748 1.762 2.270 22.210
-4.210 33.603 9 AA_DG9DT10:DA3DC4_AA A 9 ? A 4 ? A 10 ? A 3 ?
1 A DT 10 1_555 A DA 3 6_765 A DC 11 1_555 A DG 2 6_765 0.304 -0.747 3.210 -1.146 4.035 35.310 -1.792 -0.659 3.098 6.624
1.881 35.551 10 AA_DT10DC11:DG2DA3_AA A 10 ? A 3 ? A 11 ? A 2 ?
1 A DC 11 1_555 A DG 2 6_765 A DC 12 1_555 A DG 1 6_765 -0.063 -1.148 3.469 -5.164 4.975 37.845 -2.383 -0.572 3.277 7.587
7.875 38.494 11 AA_DC11DC12:DG1DG2_AA A 11 ? A 2 ? A 12 ? A 1 ?
#
_pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)'
_pdbx_audit_support.country Japan
_pdbx_audit_support.grant_number 18K19308
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id OHU
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id OHU
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_atom_sites.entry_id 7YGP
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.027269
_atom_sites.fract_transf_matrix[1][2] 0.015744
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.031487
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018185
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
CO
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 35.900 25.166 2.298 1.00 60.95 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 35.534 26.358 2.974 1.00 59.74 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 34.454 27.101 2.208 1.00 59.32 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 34.667 26.934 0.787 1.00 63.01 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 33.045 26.593 2.424 1.00 63.50 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 32.495 27.144 3.603 1.00 62.70 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 32.337 27.112 1.179 1.00 60.39 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 33.414 26.921 0.118 1.00 56.91 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 33.302 25.673 -0.626 1.00 51.59 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 34.214 24.650 -0.662 1.00 50.49 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 33.856 23.667 -1.439 1.00 54.82 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 32.633 24.067 -1.947 1.00 52.98 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 31.762 23.409 -2.848 1.00 57.46 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 31.911 22.304 -3.393 1.00 53.81 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 30.622 24.169 -3.106 1.00 53.83 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 30.370 25.410 -2.563 1.00 54.35 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 29.221 25.999 -2.925 1.00 57.14 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 31.178 26.027 -1.722 1.00 52.29 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 32.283 25.303 -1.461 1.00 50.94 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 31.579 26.218 4.538 1.00 67.36 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 31.429 26.863 5.869 1.00 69.89 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 32.197 24.878 4.400 1.00 57.31 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 30.151 26.252 3.834 1.00 62.04 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 29.488 27.489 3.696 1.00 63.59 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 28.345 27.381 2.711 1.00 60.62 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 28.862 27.075 1.396 1.00 62.17 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 27.368 26.268 3.004 1.00 62.28 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 26.401 26.712 3.929 1.00 66.45 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 26.760 26.005 1.628 1.00 61.81 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 27.979 26.178 0.728 1.00 61.93 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 28.708 24.934 0.440 1.00 57.76 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 29.907 24.538 0.982 1.00 56.72 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 30.332 23.389 0.532 1.00 56.67 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 29.357 22.999 -0.374 1.00 55.70 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 29.281 21.837 -1.183 1.00 54.14 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 30.087 20.893 -1.254 1.00 56.75 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 28.126 21.829 -1.959 1.00 54.56 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 27.167 22.825 -1.954 1.00 58.02 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 26.123 22.648 -2.769 1.00 60.60 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 27.230 23.918 -1.199 1.00 60.25 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 28.348 23.939 -0.440 1.00 54.91 ? 2 DG A C4 1
ATOM 42 P P . DA A 1 3 ? 25.799 25.661 4.973 1.00 68.97 ? 3 DA A P 1
ATOM 43 O OP1 . DA A 1 3 ? 25.094 26.368 6.072 1.00 65.14 ? 3 DA A OP1 1
ATOM 44 O OP2 . DA A 1 3 ? 26.940 24.773 5.272 1.00 60.06 ? 3 DA A OP2 1
ATOM 45 O "O5'" . DA A 1 3 ? 24.748 24.828 4.098 1.00 62.92 ? 3 DA A "O5'" 1
ATOM 46 C "C5'" . DA A 1 3 ? 23.701 25.494 3.419 1.00 63.79 ? 3 DA A "C5'" 1
ATOM 47 C "C4'" . DA A 1 3 ? 23.036 24.565 2.423 1.00 63.30 ? 3 DA A "C4'" 1
ATOM 48 O "O4'" . DA A 1 3 ? 23.948 24.283 1.341 1.00 66.03 ? 3 DA A "O4'" 1
ATOM 49 C "C3'" . DA A 1 3 ? 22.690 23.191 2.959 1.00 64.34 ? 3 DA A "C3'" 1
ATOM 50 O "O3'" . DA A 1 3 ? 21.474 23.224 3.656 1.00 66.08 ? 3 DA A "O3'" 1
ATOM 51 C "C2'" . DA A 1 3 ? 22.571 22.388 1.675 1.00 58.52 ? 3 DA A "C2'" 1
ATOM 52 C "C1'" . DA A 1 3 ? 23.743 22.947 0.885 1.00 60.30 ? 3 DA A "C1'" 1
ATOM 53 N N9 . DA A 1 3 ? 24.980 22.198 1.074 1.00 57.99 ? 3 DA A N9 1
ATOM 54 C C8 . DA A 1 3 ? 25.994 22.471 1.953 1.00 55.13 ? 3 DA A C8 1
ATOM 55 N N7 . DA A 1 3 ? 26.995 21.616 1.885 1.00 53.13 ? 3 DA A N7 1
ATOM 56 C C5 . DA A 1 3 ? 26.607 20.731 0.891 1.00 54.76 ? 3 DA A C5 1
ATOM 57 C C6 . DA A 1 3 ? 27.223 19.594 0.331 1.00 55.01 ? 3 DA A C6 1
ATOM 58 N N6 . DA A 1 3 ? 28.423 19.140 0.706 1.00 52.90 ? 3 DA A N6 1
ATOM 59 N N1 . DA A 1 3 ? 26.557 18.940 -0.639 1.00 54.58 ? 3 DA A N1 1
ATOM 60 C C2 . DA A 1 3 ? 25.364 19.395 -1.022 1.00 55.22 ? 3 DA A C2 1
ATOM 61 N N3 . DA A 1 3 ? 24.688 20.445 -0.580 1.00 55.13 ? 3 DA A N3 1
ATOM 62 C C4 . DA A 1 3 ? 25.369 21.076 0.385 1.00 57.79 ? 3 DA A C4 1
ATOM 63 P P . DC A 1 4 ? 21.282 22.261 4.919 1.00 71.42 ? 4 DC A P 1
ATOM 64 O OP1 . DC A 1 4 ? 20.032 22.679 5.593 1.00 80.55 ? 4 DC A OP1 1
ATOM 65 O OP2 . DC A 1 4 ? 22.568 22.251 5.666 1.00 62.20 ? 4 DC A OP2 1
ATOM 66 O "O5'" . DC A 1 4 ? 21.127 20.804 4.268 1.00 65.78 ? 4 DC A "O5'" 1
ATOM 67 C "C5'" . DC A 1 4 ? 19.996 20.485 3.484 1.00 62.39 ? 4 DC A "C5'" 1
ATOM 68 C "C4'" . DC A 1 4 ? 20.229 19.202 2.706 1.00 56.57 ? 4 DC A "C4'" 1
ATOM 69 O "O4'" . DC A 1 4 ? 21.398 19.351 1.874 1.00 58.95 ? 4 DC A "O4'" 1
ATOM 70 C "C3'" . DC A 1 4 ? 20.551 17.980 3.538 1.00 62.29 ? 4 DC A "C3'" 1
ATOM 71 O "O3'" . DC A 1 4 ? 19.384 17.414 4.072 1.00 65.31 ? 4 DC A "O3'" 1
ATOM 72 C "C2'" . DC A 1 4 ? 21.176 17.081 2.487 1.00 63.67 ? 4 DC A "C2'" 1
ATOM 73 C "C1'" . DC A 1 4 ? 22.022 18.089 1.713 1.00 56.51 ? 4 DC A "C1'" 1
ATOM 74 N N1 . DC A 1 4 ? 23.435 18.172 2.214 1.00 58.98 ? 4 DC A N1 1
ATOM 75 C C2 . DC A 1 4 ? 24.369 17.250 1.751 1.00 56.45 ? 4 DC A C2 1
ATOM 76 O O2 . DC A 1 4 ? 24.010 16.398 0.927 1.00 60.08 ? 4 DC A O2 1
ATOM 77 N N3 . DC A 1 4 ? 25.643 17.324 2.193 1.00 51.89 ? 4 DC A N3 1
ATOM 78 C C4 . DC A 1 4 ? 25.987 18.258 3.082 1.00 56.43 ? 4 DC A C4 1
ATOM 79 N N4 . DC A 1 4 ? 27.256 18.280 3.501 1.00 51.59 ? 4 DC A N4 1
ATOM 80 C C5 . DC A 1 4 ? 25.049 19.208 3.574 1.00 54.07 ? 4 DC A C5 1
ATOM 81 C C6 . DC A 1 4 ? 23.795 19.130 3.116 1.00 57.48 ? 4 DC A C6 1
ATOM 82 P P . DC A 1 5 ? 19.473 16.573 5.430 1.00 70.47 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? 18.088 16.371 5.913 1.00 74.09 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? 20.482 17.227 6.299 1.00 65.14 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? 20.112 15.176 4.983 1.00 69.61 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? 19.444 14.354 4.042 1.00 61.94 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? 20.338 13.212 3.593 1.00 54.32 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? 21.458 13.746 2.850 1.00 59.95 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? 21.009 12.397 4.690 1.00 57.34 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? 20.130 11.429 5.250 1.00 64.02 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? 22.113 11.717 3.895 1.00 57.21 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? 22.563 12.851 2.974 1.00 57.06 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? 23.737 13.593 3.511 1.00 55.26 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? 25.004 13.034 3.388 1.00 53.57 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? 25.122 11.942 2.823 1.00 54.20 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? 26.071 13.709 3.888 1.00 55.15 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? 25.889 14.886 4.499 1.00 51.00 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? 26.961 15.515 4.967 1.00 48.58 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? 24.600 15.465 4.645 1.00 53.15 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? 23.559 14.793 4.142 1.00 55.45 ? 5 DC A C6 1
ATOM 101 P P . DT A 1 6 ? 20.373 10.915 6.756 1.00 60.06 ? 6 DT A P 1
ATOM 102 O OP1 . DT A 1 6 ? 19.321 9.926 7.075 1.00 61.02 ? 6 DT A OP1 1
ATOM 103 O OP2 . DT A 1 6 ? 20.544 12.134 7.564 1.00 52.15 ? 6 DT A OP2 1
ATOM 104 O "O5'" . DT A 1 6 ? 21.803 10.167 6.715 1.00 61.47 ? 6 DT A "O5'" 1
ATOM 105 C "C5'" . DT A 1 6 ? 21.912 8.855 6.157 1.00 56.32 ? 6 DT A "C5'" 1
ATOM 106 C "C4'" . DT A 1 6 ? 23.363 8.388 6.087 1.00 56.89 ? 6 DT A "C4'" 1
ATOM 107 O "O4'" . DT A 1 6 ? 24.148 9.363 5.352 1.00 53.67 ? 6 DT A "O4'" 1
ATOM 108 C "C3'" . DT A 1 6 ? 24.108 8.257 7.413 1.00 51.03 ? 6 DT A "C3'" 1
ATOM 109 O "O3'" . DT A 1 6 ? 23.814 7.023 8.084 1.00 56.48 ? 6 DT A "O3'" 1
ATOM 110 C "C2'" . DT A 1 6 ? 25.550 8.282 6.923 1.00 58.66 ? 6 DT A "C2'" 1
ATOM 111 C "C1'" . DT A 1 6 ? 25.482 9.378 5.861 1.00 59.11 ? 6 DT A "C1'" 1
ATOM 112 N N1 . DT A 1 6 ? 25.800 10.750 6.421 1.00 54.75 ? 6 DT A N1 1
ATOM 113 C C2 . DT A 1 6 ? 27.118 11.123 6.596 1.00 53.02 ? 6 DT A C2 1
ATOM 114 O O2 . DT A 1 6 ? 28.059 10.404 6.308 1.00 56.92 ? 6 DT A O2 1
ATOM 115 N N3 . DT A 1 6 ? 27.295 12.376 7.126 1.00 56.02 ? 6 DT A N3 1
ATOM 116 C C4 . DT A 1 6 ? 26.299 13.267 7.497 1.00 55.37 ? 6 DT A C4 1
ATOM 117 O O4 . DT A 1 6 ? 26.545 14.371 7.961 1.00 59.36 ? 6 DT A O4 1
ATOM 118 C C5 . DT A 1 6 ? 24.950 12.807 7.297 1.00 55.62 ? 6 DT A C5 1
ATOM 119 C C7 . DT A 1 6 ? 23.795 13.691 7.656 1.00 59.69 ? 6 DT A C7 1
ATOM 120 C C6 . DT A 1 6 ? 24.768 11.587 6.780 1.00 54.23 ? 6 DT A C6 1
HETATM 121 P P . OHU A 1 7 ? 23.777 6.983 9.706 1.00 62.03 ? 7 OHU A P 1
HETATM 122 N N1 . OHU A 1 7 ? 28.772 9.397 10.274 1.00 55.73 ? 7 OHU A N1 1
HETATM 123 C C2 . OHU A 1 7 ? 29.891 10.173 10.494 1.00 59.37 ? 7 OHU A C2 1
HETATM 124 O O2 . OHU A 1 7 ? 30.997 9.659 10.536 1.00 64.11 ? 7 OHU A O2 1
HETATM 125 N N3 . OHU A 1 7 ? 29.709 11.537 10.641 1.00 47.66 ? 7 OHU A N3 1
HETATM 126 C C4 . OHU A 1 7 ? 28.522 12.201 10.626 1.00 48.88 ? 7 OHU A C4 1
HETATM 127 O O4 . OHU A 1 7 ? 28.404 13.414 10.763 1.00 48.01 ? 7 OHU A O4 1
HETATM 128 C C5 . OHU A 1 7 ? 27.375 11.351 10.400 1.00 60.31 ? 7 OHU A C5 1
HETATM 129 O O5 . OHU A 1 7 ? 26.144 11.980 10.373 1.00 63.95 ? 7 OHU A O5 1
HETATM 130 C C6 . OHU A 1 7 ? 27.531 10.018 10.232 1.00 55.66 ? 7 OHU A C6 1
HETATM 131 C "C1'" . OHU A 1 7 ? 28.954 7.887 10.096 1.00 55.47 ? 7 OHU A "C1'" 1
HETATM 132 C "C2'" . OHU A 1 7 ? 28.951 7.031 11.370 1.00 64.84 ? 7 OHU A "C2'" 1
HETATM 133 C "C3'" . OHU A 1 7 ? 27.580 6.344 11.357 1.00 62.84 ? 7 OHU A "C3'" 1
HETATM 134 O "O3'" . OHU A 1 7 ? 27.527 5.139 12.157 1.00 65.47 ? 7 OHU A "O3'" 1
HETATM 135 C "C4'" . OHU A 1 7 ? 27.482 6.072 9.860 1.00 62.17 ? 7 OHU A "C4'" 1
HETATM 136 O "O4'" . OHU A 1 7 ? 27.903 7.341 9.311 1.00 62.53 ? 7 OHU A "O4'" 1
HETATM 137 C "C5'" . OHU A 1 7 ? 26.117 5.749 9.273 1.00 61.50 ? 7 OHU A "C5'" 1
HETATM 138 O "O5'" . OHU A 1 7 ? 25.049 6.088 10.145 1.00 58.54 ? 7 OHU A "O5'" 1
HETATM 139 O OP1 . OHU A 1 7 ? 22.521 6.278 10.049 1.00 67.23 ? 7 OHU A OP1 1
HETATM 140 O OP2 . OHU A 1 7 ? 24.058 8.323 10.262 1.00 57.75 ? 7 OHU A OP2 1
ATOM 141 P P . DG A 1 8 ? 27.042 5.172 13.702 1.00 71.13 ? 8 DG A P 1
ATOM 142 O OP1 . DG A 1 8 ? 26.966 3.780 14.180 1.00 77.26 ? 8 DG A OP1 1
ATOM 143 O OP2 . DG A 1 8 ? 25.868 6.059 13.869 1.00 69.83 ? 8 DG A OP2 1
ATOM 144 O "O5'" . DG A 1 8 ? 28.258 5.846 14.475 1.00 66.85 ? 8 DG A "O5'" 1
ATOM 145 C "C5'" . DG A 1 8 ? 29.482 5.158 14.589 1.00 66.26 ? 8 DG A "C5'" 1
ATOM 146 C "C4'" . DG A 1 8 ? 30.541 6.070 15.156 1.00 60.46 ? 8 DG A "C4'" 1
ATOM 147 O "O4'" . DG A 1 8 ? 30.858 7.090 14.188 1.00 62.08 ? 8 DG A "O4'" 1
ATOM 148 C "C3'" . DG A 1 8 ? 30.119 6.843 16.391 1.00 63.27 ? 8 DG A "C3'" 1
ATOM 149 O "O3'" . DG A 1 8 ? 30.337 6.054 17.541 1.00 72.66 ? 8 DG A "O3'" 1
ATOM 150 C "C2'" . DG A 1 8 ? 31.080 8.022 16.352 1.00 58.40 ? 8 DG A "C2'" 1
ATOM 151 C "C1'" . DG A 1 8 ? 31.158 8.305 14.859 1.00 60.51 ? 8 DG A "C1'" 1
ATOM 152 N N9 . DG A 1 8 ? 30.214 9.321 14.433 1.00 56.98 ? 8 DG A N9 1
ATOM 153 C C8 . DG A 1 8 ? 28.996 9.123 13.829 1.00 64.12 ? 8 DG A C8 1
ATOM 154 N N7 . DG A 1 8 ? 28.364 10.230 13.558 1.00 65.68 ? 8 DG A N7 1
ATOM 155 C C5 . DG A 1 8 ? 29.216 11.227 14.022 1.00 57.64 ? 8 DG A C5 1
ATOM 156 C C6 . DG A 1 8 ? 29.070 12.630 13.999 1.00 53.11 ? 8 DG A C6 1
ATOM 157 O O6 . DG A 1 8 ? 28.124 13.289 13.569 1.00 54.42 ? 8 DG A O6 1
ATOM 158 N N1 . DG A 1 8 ? 30.163 13.278 14.573 1.00 58.28 ? 8 DG A N1 1
ATOM 159 C C2 . DG A 1 8 ? 31.265 12.637 15.102 1.00 56.24 ? 8 DG A C2 1
ATOM 160 N N2 . DG A 1 8 ? 32.225 13.424 15.602 1.00 53.13 ? 8 DG A N2 1
ATOM 161 N N3 . DG A 1 8 ? 31.419 11.318 15.119 1.00 53.45 ? 8 DG A N3 1
ATOM 162 C C4 . DG A 1 8 ? 30.358 10.681 14.567 1.00 56.96 ? 8 DG A C4 1
ATOM 163 P P . DG A 1 9 ? 29.531 6.326 18.905 1.00 69.02 ? 9 DG A P 1
ATOM 164 O OP1 . DG A 1 9 ? 30.280 5.504 19.872 1.00 65.47 ? 9 DG A OP1 1
ATOM 165 O OP2 . DG A 1 9 ? 28.077 6.118 18.669 1.00 64.51 ? 9 DG A OP2 1
ATOM 166 O "O5'" . DG A 1 9 ? 29.761 7.886 19.241 1.00 54.55 ? 9 DG A "O5'" 1
ATOM 167 C "C5'" . DG A 1 9 ? 30.791 8.257 20.120 1.00 60.61 ? 9 DG A "C5'" 1
ATOM 168 C "C4'" . DG A 1 9 ? 31.111 9.736 20.028 1.00 56.03 ? 9 DG A "C4'" 1
ATOM 169 O "O4'" . DG A 1 9 ? 30.814 10.250 18.714 1.00 56.25 ? 9 DG A "O4'" 1
ATOM 170 C "C3'" . DG A 1 9 ? 30.320 10.646 20.932 1.00 53.84 ? 9 DG A "C3'" 1
ATOM 171 O "O3'" . DG A 1 9 ? 30.793 10.532 22.263 1.00 58.31 ? 9 DG A "O3'" 1
ATOM 172 C "C2'" . DG A 1 9 ? 30.691 11.998 20.323 1.00 53.67 ? 9 DG A "C2'" 1
ATOM 173 C "C1'" . DG A 1 9 ? 30.748 11.665 18.813 1.00 55.35 ? 9 DG A "C1'" 1
ATOM 174 N N9 . DG A 1 9 ? 29.572 12.121 18.101 1.00 51.06 ? 9 DG A N9 1
ATOM 175 C C8 . DG A 1 9 ? 28.557 11.344 17.607 1.00 55.91 ? 9 DG A C8 1
ATOM 176 N N7 . DG A 1 9 ? 27.613 12.035 17.029 1.00 60.08 ? 9 DG A N7 1
ATOM 177 C C5 . DG A 1 9 ? 28.021 13.353 17.165 1.00 55.30 ? 9 DG A C5 1
ATOM 178 C C6 . DG A 1 9 ? 27.400 14.541 16.735 1.00 57.30 ? 9 DG A C6 1
ATOM 179 O O6 . DG A 1 9 ? 26.329 14.667 16.133 1.00 61.86 ? 9 DG A O6 1
ATOM 180 N N1 . DG A 1 9 ? 28.144 15.666 17.066 1.00 52.90 ? 9 DG A N1 1
ATOM 181 C C2 . DG A 1 9 ? 29.339 15.644 17.724 1.00 52.85 ? 9 DG A C2 1
ATOM 182 N N2 . DG A 1 9 ? 29.900 16.837 17.959 1.00 53.01 ? 9 DG A N2 1
ATOM 183 N N3 . DG A 1 9 ? 29.940 14.532 18.138 1.00 53.75 ? 9 DG A N3 1
ATOM 184 C C4 . DG A 1 9 ? 29.222 13.428 17.828 1.00 52.96 ? 9 DG A C4 1
ATOM 185 P P . DT A 1 10 ? 29.839 10.861 23.515 1.00 58.28 ? 10 DT A P 1
ATOM 186 O OP1 . DT A 1 10 ? 30.596 10.362 24.676 1.00 63.32 ? 10 DT A OP1 1
ATOM 187 O OP2 . DT A 1 10 ? 28.444 10.438 23.262 1.00 58.81 ? 10 DT A OP2 1
ATOM 188 O "O5'" . DT A 1 10 ? 29.871 12.443 23.613 1.00 50.37 ? 10 DT A "O5'" 1
ATOM 189 C "C5'" . DT A 1 10 ? 31.126 13.077 23.776 1.00 58.63 ? 10 DT A "C5'" 1
ATOM 190 C "C4'" . DT A 1 10 ? 30.952 14.564 23.912 1.00 59.39 ? 10 DT A "C4'" 1
ATOM 191 O "O4'" . DT A 1 10 ? 30.379 15.101 22.686 1.00 57.97 ? 10 DT A "O4'" 1
ATOM 192 C "C3'" . DT A 1 10 ? 30.015 14.965 25.032 1.00 59.71 ? 10 DT A "C3'" 1
ATOM 193 O "O3'" . DT A 1 10 ? 30.512 16.094 25.689 1.00 64.07 ? 10 DT A "O3'" 1
ATOM 194 C "C2'" . DT A 1 10 ? 28.702 15.264 24.314 1.00 56.06 ? 10 DT A "C2'" 1
ATOM 195 C "C1'" . DT A 1 10 ? 29.185 15.796 22.975 1.00 59.77 ? 10 DT A "C1'" 1
ATOM 196 N N1 . DT A 1 10 ? 28.197 15.544 21.880 1.00 56.22 ? 10 DT A N1 1
ATOM 197 C C2 . DT A 1 10 ? 27.685 16.603 21.182 1.00 52.06 ? 10 DT A C2 1
ATOM 198 O O2 . DT A 1 10 ? 28.020 17.754 21.379 1.00 51.53 ? 10 DT A O2 1
ATOM 199 N N3 . DT A 1 10 ? 26.760 16.263 20.228 1.00 54.86 ? 10 DT A N3 1
ATOM 200 C C4 . DT A 1 10 ? 26.310 14.995 19.918 1.00 53.55 ? 10 DT A C4 1
ATOM 201 O O4 . DT A 1 10 ? 25.483 14.791 19.041 1.00 59.64 ? 10 DT A O4 1
ATOM 202 C C5 . DT A 1 10 ? 26.878 13.929 20.704 1.00 55.07 ? 10 DT A C5 1
ATOM 203 C C7 . DT A 1 10 ? 26.461 12.512 20.467 1.00 55.48 ? 10 DT A C7 1
ATOM 204 C C6 . DT A 1 10 ? 27.778 14.251 21.636 1.00 56.05 ? 10 DT A C6 1
ATOM 205 P P . DC A 1 11 ? 29.864 16.525 27.091 1.00 69.59 ? 11 DC A P 1
ATOM 206 O OP1 . DC A 1 11 ? 30.942 17.167 27.879 1.00 66.53 ? 11 DC A OP1 1
ATOM 207 O OP2 . DC A 1 11 ? 29.178 15.320 27.617 1.00 60.37 ? 11 DC A OP2 1
ATOM 208 O "O5'" . DC A 1 11 ? 28.791 17.625 26.668 1.00 58.83 ? 11 DC A "O5'" 1
ATOM 209 C "C5'" . DC A 1 11 ? 29.242 18.854 26.156 1.00 59.29 ? 11 DC A "C5'" 1
ATOM 210 C "C4'" . DC A 1 11 ? 28.081 19.709 25.708 1.00 62.81 ? 11 DC A "C4'" 1
ATOM 211 O "O4'" . DC A 1 11 ? 27.441 19.100 24.559 1.00 63.70 ? 11 DC A "O4'" 1
ATOM 212 C "C3'" . DC A 1 11 ? 26.983 19.904 26.754 1.00 62.66 ? 11 DC A "C3'" 1
ATOM 213 O "O3'" . DC A 1 11 ? 26.705 21.274 26.891 1.00 76.01 ? 11 DC A "O3'" 1
ATOM 214 C "C2'" . DC A 1 11 ? 25.784 19.165 26.167 1.00 68.93 ? 11 DC A "C2'" 1
ATOM 215 C "C1'" . DC A 1 11 ? 26.055 19.267 24.678 1.00 60.23 ? 11 DC A "C1'" 1
ATOM 216 N N1 . DC A 1 11 ? 25.409 18.204 23.909 1.00 58.30 ? 11 DC A N1 1
ATOM 217 C C2 . DC A 1 11 ? 24.598 18.531 22.809 1.00 58.86 ? 11 DC A C2 1
ATOM 218 O O2 . DC A 1 11 ? 24.436 19.728 22.505 1.00 54.82 ? 11 DC A O2 1
ATOM 219 N N3 . DC A 1 11 ? 24.006 17.522 22.113 1.00 55.94 ? 11 DC A N3 1
ATOM 220 C C4 . DC A 1 11 ? 24.206 16.252 22.482 1.00 55.96 ? 11 DC A C4 1
ATOM 221 N N4 . DC A 1 11 ? 23.617 15.294 21.771 1.00 51.92 ? 11 DC A N4 1
ATOM 222 C C5 . DC A 1 11 ? 25.031 15.908 23.597 1.00 58.58 ? 11 DC A C5 1
ATOM 223 C C6 . DC A 1 11 ? 25.602 16.905 24.275 1.00 56.73 ? 11 DC A C6 1
ATOM 224 P P . DC A 1 12 ? 25.654 21.779 27.996 1.00 80.50 ? 12 DC A P 1
ATOM 225 O OP1 . DC A 1 12 ? 26.166 23.098 28.432 1.00 80.16 ? 12 DC A OP1 1
ATOM 226 O OP2 . DC A 1 12 ? 25.375 20.690 28.973 1.00 65.06 ? 12 DC A OP2 1
ATOM 227 O "O5'" . DC A 1 12 ? 24.312 21.997 27.165 1.00 73.04 ? 12 DC A "O5'" 1
ATOM 228 C "C5'" . DC A 1 12 ? 24.139 23.166 26.392 1.00 73.48 ? 12 DC A "C5'" 1
ATOM 229 C "C4'" . DC A 1 12 ? 22.758 23.171 25.784 1.00 71.72 ? 12 DC A "C4'" 1
ATOM 230 O "O4'" . DC A 1 12 ? 22.674 22.086 24.853 1.00 70.65 ? 12 DC A "O4'" 1
ATOM 231 C "C3'" . DC A 1 12 ? 21.645 22.900 26.778 1.00 72.86 ? 12 DC A "C3'" 1
ATOM 232 O "O3'" . DC A 1 12 ? 21.181 24.130 27.342 1.00 85.04 ? 12 DC A "O3'" 1
ATOM 233 C "C2'" . DC A 1 12 ? 20.562 22.227 25.929 1.00 68.14 ? 12 DC A "C2'" 1
ATOM 234 C "C1'" . DC A 1 12 ? 21.328 21.696 24.713 1.00 67.61 ? 12 DC A "C1'" 1
ATOM 235 N N1 . DC A 1 12 ? 21.287 20.211 24.550 1.00 60.67 ? 12 DC A N1 1
ATOM 236 C C2 . DC A 1 12 ? 20.406 19.646 23.626 1.00 58.25 ? 12 DC A C2 1
ATOM 237 O O2 . DC A 1 12 ? 19.657 20.383 22.982 1.00 61.56 ? 12 DC A O2 1
ATOM 238 N N3 . DC A 1 12 ? 20.394 18.305 23.467 1.00 59.04 ? 12 DC A N3 1
ATOM 239 C C4 . DC A 1 12 ? 21.216 17.541 24.180 1.00 54.42 ? 12 DC A C4 1
ATOM 240 N N4 . DC A 1 12 ? 21.163 16.220 23.983 1.00 56.10 ? 12 DC A N4 1
ATOM 241 C C5 . DC A 1 12 ? 22.130 18.096 25.118 1.00 59.40 ? 12 DC A C5 1
ATOM 242 C C6 . DC A 1 12 ? 22.133 19.425 25.269 1.00 61.74 ? 12 DC A C6 1
HETATM 243 CO CO . NCO B 2 . ? 23.784 11.169 14.938 1.00 108.24 3 101 NCO A CO 1
HETATM 244 N N1 . NCO B 2 . ? 23.219 12.028 16.631 1.00 75.91 ? 101 NCO A N1 1
HETATM 245 N N2 . NCO B 2 . ? 24.380 10.306 13.259 1.00 67.26 ? 101 NCO A N2 1
HETATM 246 N N3 . NCO B 2 . ? 25.042 12.655 14.586 1.00 72.48 ? 101 NCO A N3 1
HETATM 247 N N4 . NCO B 2 . ? 25.162 10.202 15.986 1.00 76.27 ? 101 NCO A N4 1
HETATM 248 N N5 . NCO B 2 . ? 22.533 9.663 15.242 1.00 96.83 ? 101 NCO A N5 1
HETATM 249 N N6 . NCO B 2 . ? 22.392 12.136 13.912 1.00 86.66 ? 101 NCO A N6 1
HETATM 250 CO CO . CO C 3 . ? 16.925 15.029 9.215 1.00 99.67 3 102 CO A CO 1
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