data_7YGO
#
_entry.id 7YGO
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7YGO pdb_00007ygo 10.2210/pdb7ygo/pdb
WWPDB D_1300030885 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2023-05-24
2 'Structure model' 1 1 2024-05-29
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_audit_revision_group.ordinal 1
_pdbx_audit_revision_group.revision_ordinal 2
_pdbx_audit_revision_group.data_content_type 'Structure model'
_pdbx_audit_revision_group.group 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7YGO
_pdbx_database_status.recvd_initial_deposition_date 2022-07-12
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_contact_author.id 2
_pdbx_contact_author.email j.kondo@sophia.ac.jp
_pdbx_contact_author.name_first Jiro
_pdbx_contact_author.name_last Kondo
_pdbx_contact_author.name_mi ?
_pdbx_contact_author.role 'principal investigator/group leader'
_pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Kondo, J.' 1 0000-0002-5682-3685
'Torigoe, H.' 2 ?
'Arakawa, F.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev J.Inorg.Biochem.
_citation.journal_id_ASTM JIBIDJ
_citation.journal_id_CSD 0525
_citation.journal_id_ISSN 0162-0134
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 241
_citation.language ?
_citation.page_first 112125
_citation.page_last 112125
_citation.title 'Specific binding of Hg 2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA.'
_citation.year 2023
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1016/j.jinorgbio.2023.112125
_citation.pdbx_database_id_PubMed 36716510
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Torigoe, H.' 1 ?
primary 'Kondo, J.' 2 ?
primary 'Arakawa, F.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*GP*AP*CP*CP*TP*(6HU)P*GP*GP*TP*CP*C)-3')
;
3656.351 1 ? ? ? ?
2 non-polymer syn 'MERCURY (II) ION' 200.590 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DC)(DC)(DT)(OHU)(DG)(DG)(DT)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGACCTXGGTCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name 'MERCURY (II) ION'
_pdbx_entity_nonpoly.comp_id HG
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DA n
1 4 DC n
1 5 DC n
1 6 DT n
1 7 OHU n
1 8 DG n
1 9 DG n
1 10 DT n
1 11 DC n
1 12 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 12
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HG non-polymer . 'MERCURY (II) ION' ? 'Hg 2' 200.590
OHU 'DNA linking' n
;2'-deoxy-5-hydroxyuridine 5'-(dihydrogen phosphate)
;
? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DT 6 6 6 DT DT A . n
A 1 7 OHU 7 7 7 OHU 6HU A . n
A 1 8 DG 8 8 8 DG DG A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DT 10 10 10 DT DT A . n
A 1 11 DC 11 11 11 DC DC A . n
A 1 12 DC 12 12 12 DC DC A . n
#
_pdbx_nonpoly_scheme.asym_id B
_pdbx_nonpoly_scheme.entity_id 2
_pdbx_nonpoly_scheme.mon_id HG
_pdbx_nonpoly_scheme.ndb_seq_num 1
_pdbx_nonpoly_scheme.pdb_seq_num 101
_pdbx_nonpoly_scheme.auth_seq_num 1
_pdbx_nonpoly_scheme.pdb_mon_id HG
_pdbx_nonpoly_scheme.auth_mon_id HG
_pdbx_nonpoly_scheme.pdb_strand_id A
_pdbx_nonpoly_scheme.pdb_ins_code .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 7YGO
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 37.336
_cell.length_a_esd ?
_cell.length_b 37.336
_cell.length_b_esd ?
_cell.length_c 54.938
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
_cell.pdbx_esd_method ?
#
_symmetry.entry_id 7YGO
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7YGO
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.02
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 59.31
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.pdbx_mosaic_method ?
_exptl_crystal.pdbx_mosaic_block_size ?
_exptl_crystal.pdbx_mosaic_block_size_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'MPD, spermine, potassium nitrate, MOPS'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS3 S 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2018-11-21
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.00910
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.00910
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL-5A
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
#
_reflns.B_iso_Wilson_estimate 71.070
_reflns.entry_id 7YGO
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.400
_reflns.d_resolution_low 27.866
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 3345
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.800
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 10.032
_reflns.pdbx_Rmerge_I_obs 0.036
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 30.950
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.568
_reflns.pdbx_scaling_rejects 11
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.038
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 33557
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.999
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
_reflns.pdbx_CC_split_method ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
2.400 2.470 ? 4.700 ? 2426 276 ? 273 98.900 ? ? ? ? 0.304 ? ? ? ? ? ? ? ? 8.886 ? ? ? ? 0.323 ? ? 1 1 0.992 ? ? ? ? ? ? ? ?
? ?
2.470 2.540 ? 6.600 ? 2309 227 ? 227 100.000 ? ? ? ? 0.271 ? ? ? ? ? ? ? ? 10.172 ? ? ? ? 0.285 ? ? 2 1 0.988 ? ? ? ? ? ? ? ?
? ?
2.540 2.620 ? 8.970 ? 2548 253 ? 253 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 10.071 ? ? ? ? 0.195 ? ? 3 1 0.996 ? ? ? ? ? ? ? ?
? ?
2.620 2.700 ? 12.030 ? 2587 247 ? 247 100.000 ? ? ? ? 0.142 ? ? ? ? ? ? ? ? 10.474 ? ? ? ? 0.150 ? ? 4 1 0.997 ? ? ? ? ? ? ? ?
? ?
2.700 2.800 ? 14.190 ? 2448 224 ? 223 99.600 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 10.978 ? ? ? ? 0.127 ? ? 5 1 0.998 ? ? ? ? ? ? ? ?
? ?
2.800 2.910 ? 18.600 ? 2705 248 ? 248 100.000 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 10.907 ? ? ? ? 0.098 ? ? 6 1 0.999 ? ? ? ? ? ? ? ?
? ?
2.910 3.020 ? 30.000 ? 2085 193 ? 193 100.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 10.803 ? ? ? ? 0.051 ? ? 7 1 1.000 ? ? ? ? ? ? ? ?
? ?
3.020 3.160 ? 35.080 ? 2265 215 ? 215 100.000 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 10.535 ? ? ? ? 0.047 ? ? 8 1 0.999 ? ? ? ? ? ? ? ?
? ?
3.160 3.310 ? 40.240 ? 1969 193 ? 193 100.000 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 10.202 ? ? ? ? 0.035 ? ? 9 1 1.000 ? ? ? ? ? ? ? ?
? ?
3.310 3.490 ? 42.570 ? 1651 176 ? 176 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 9.381 ? ? ? ? 0.038 ? ? 10 1 1.000 ? ? ? ? ? ? ? ?
? ?
3.490 3.700 ? 50.090 ? 1764 190 ? 190 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 9.284 ? ? ? ? 0.037 ? ? 11 1 1.000 ? ? ? ? ? ? ? ?
? ?
3.700 3.960 ? 46.970 ? 1447 154 ? 154 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 9.396 ? ? ? ? 0.034 ? ? 12 1 1.000 ? ? ? ? ? ? ? ?
? ?
3.960 4.280 ? 54.350 ? 1635 161 ? 161 100.000 ? ? ? ? 0.037 ? ? ? ? ? ? ? ? 10.155 ? ? ? ? 0.039 ? ? 13 1 1.000 ? ? ? ? ? ? ? ?
? ?
4.280 4.690 ? 55.720 ? 1528 154 ? 154 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 9.922 ? ? ? ? 0.034 ? ? 14 1 0.999 ? ? ? ? ? ? ? ?
? ?
4.690 5.240 ? 58.570 ? 1162 116 ? 116 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 10.017 ? ? ? ? 0.036 ? ? 15 1 0.999 ? ? ? ? ? ? ? ?
? ?
5.240 6.050 ? 56.940 ? 1087 113 ? 113 100.000 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 9.619 ? ? ? ? 0.032 ? ? 16 1 0.999 ? ? ? ? ? ? ? ?
? ?
6.050 7.410 ? 55.080 ? 880 100 ? 100 100.000 ? ? ? ? 0.030 ? ? ? ? ? ? ? ? 8.800 ? ? ? ? 0.032 ? ? 17 1 1.000 ? ? ? ? ? ? ? ?
? ?
7.410 10.480 ? 55.820 ? 677 72 ? 72 100.000 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 9.403 ? ? ? ? 0.031 ? ? 18 1 1.000 ? ? ? ? ? ? ? ?
? ?
10.480 27.866 ? 62.140 ? 384 40 ? 37 92.500 ? ? ? ? 0.031 ? ? ? ? ? ? ? ? 10.378 ? ? ? ? 0.033 ? ? 19 1 0.999 ? ? ? ? ? ? ? ?
? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 92.160
_refine.B_iso_mean 72.6245
_refine.B_iso_min 60.810
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7YGO
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.4030
_refine.ls_d_res_low 27.8660
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 3336
_refine.ls_number_reflns_R_free 337
_refine.ls_number_reflns_R_work 2999
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.5200
_refine.ls_percent_reflns_R_free 10.1000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2078
_refine.ls_R_factor_R_free 0.2370
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2045
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.430
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 31.8100
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1500
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 2.4030
_refine_hist.d_res_low 27.8660
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 243
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 12
_refine_hist.pdbx_B_iso_mean_ligand 81.86
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 242
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.008 ? 270 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 0.939 ? 415 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.041 ? 46 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.005 ? 12 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 17.020 ? 110 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 2.4030 3.0265 . . 165 1492 99.0000 . . . 0.3040 0.0000 0.2808 . . . . . . . . . . .
'X-RAY DIFFRACTION' 3.0265 27.8660 . . 172 1507 100.0000 . . . 0.2241 0.0000 0.1908 . . . . . . . . . . .
#
_struct.entry_id 7YGO
_struct.title 'DNA duplex containing 5OHU-Hg(II)-T base pairs'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7YGO
_struct_keywords.text 'DNA, metal-mediated base pair, metallo-DNA, mercury'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7YGO
_struct_ref.pdbx_db_accession 7YGO
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7YGO
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 12
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 7YGO
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 12
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1510 ?
1 MORE -68 ?
1 'SSA (A^2)' 4270 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_557 -x,-x+y,-z+7/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 128.1886666667
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 6 "O3'" ? ? ? 1_555 A OHU 7 P ? ? A DT 6 A OHU 7 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale2 covale one ? A OHU 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A OHU 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.601 ? ?
metalc1 metalc ? ? A DT 6 N3 ? ? ? 1_555 B HG . HG ? ? A DT 6 A HG 101 1_555 ? ? ? ? ? ? ? 2.032 ? ?
metalc2 metalc ? ? A DT 6 O4 ? ? ? 1_555 B HG . HG ? ? A DT 6 A HG 101 1_555 ? ? ? ? ? ? ? 2.576 ? ?
metalc3 metalc ? ? A OHU 7 N3 ? ? ? 1_555 B HG . HG ? ? A OHU 7 A HG 101 6_557 ? ? ? ? ? ? ? 2.133 ? ?
metalc4 metalc ? ? A OHU 7 O4 ? ? ? 1_555 B HG . HG ? ? A OHU 7 A HG 101 6_557 ? ? ? ? ? ? ? 2.825 ? ?
metalc5 metalc ? ? A DG 8 O6 ? ? ? 1_555 B HG . HG ? ? A DG 8 A HG 101 6_557 ? ? ? ? ? ? ? 3.047 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 1 A DC 12 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 1 A DC 12 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 1 A DC 12 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 2 A DC 11 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 2 A DC 11 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 2 A DC 11 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 3 A DT 10 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 3 A DT 10 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 4 A DG 9 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 4 A DG 9 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 8 A DC 5 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 8 A DC 5 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 8 A DC 5 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 9 A DC 4 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 9 A DC 4 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 9 A DC 4 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 10 A DA 3 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 10 A DA 3 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 12 A DG 1 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 12 A DG 1 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 12 A DG 1 6_557 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O4 ? A DT 6 ? A DT 6 ? 1_555 57.6 ?
2 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 N3 ? A OHU 7 ? A OHU 7 ? 1_555 81.4 ?
3 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 N3 ? A OHU 7 ? A OHU 7 ? 1_555 86.8 ?
4 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O4 ? A OHU 7 ? A OHU 7 ? 1_555 69.6 ?
5 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O4 ? A OHU 7 ? A OHU 7 ? 1_555 52.7 ?
6 N3 ? A OHU 7 ? A OHU 7 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O4 ? A OHU 7 ? A OHU 7 ? 1_555 34.6 ?
7 N3 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 99.9 ?
8 O4 ? A DT 6 ? A DT 6 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 71.9 ?
9 N3 ? A OHU 7 ? A OHU 7 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 35.6 ?
10 O4 ? A OHU 7 ? A OHU 7 ? 1_555 HG ? B HG . ? A HG 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 30.5 ?
#
_pdbx_entry_details.entry_id 7YGO
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HG HG HG N N 144
OHU P P N N 145
OHU N1 N N N 146
OHU C2 C N N 147
OHU O2 O N N 148
OHU N3 N N N 149
OHU C4 C N N 150
OHU O4 O N N 151
OHU C5 C N N 152
OHU O5 O N N 153
OHU C6 C N N 154
OHU "C1'" C N R 155
OHU "C2'" C N N 156
OHU "C3'" C N S 157
OHU "O3'" O N N 158
OHU "C4'" C N R 159
OHU "O4'" O N N 160
OHU "C5'" C N N 161
OHU "O5'" O N N 162
OHU OP1 O N N 163
OHU OP2 O N N 164
OHU OP3 O N N 165
OHU HN3 H N N 166
OHU HO5 H N N 167
OHU H6 H N N 168
OHU "H1'" H N N 169
OHU "H2'" H N N 170
OHU "H2'A" H N N 171
OHU "H3'" H N N 172
OHU "HO3'" H N N 173
OHU "H4'" H N N 174
OHU "H5'" H N N 175
OHU "H5'A" H N N 176
OHU HOP2 H N N 177
OHU HOP3 H N N 178
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
OHU P "O5'" sing N N 150
OHU P OP1 doub N N 151
OHU P OP2 sing N N 152
OHU P OP3 sing N N 153
OHU N1 C2 sing N N 154
OHU N1 C6 sing N N 155
OHU N1 "C1'" sing N N 156
OHU C2 O2 doub N N 157
OHU C2 N3 sing N N 158
OHU N3 C4 sing N N 159
OHU C4 O4 doub N N 160
OHU C4 C5 sing N N 161
OHU C5 O5 sing N N 162
OHU C5 C6 doub N N 163
OHU "C1'" "C2'" sing N N 164
OHU "C1'" "O4'" sing N N 165
OHU "C2'" "C3'" sing N N 166
OHU "C3'" "O3'" sing N N 167
OHU "C3'" "C4'" sing N N 168
OHU "C4'" "O4'" sing N N 169
OHU "C4'" "C5'" sing N N 170
OHU "C5'" "O5'" sing N N 171
OHU N3 HN3 sing N N 172
OHU O5 HO5 sing N N 173
OHU C6 H6 sing N N 174
OHU "C1'" "H1'" sing N N 175
OHU "C2'" "H2'" sing N N 176
OHU "C2'" "H2'A" sing N N 177
OHU "C3'" "H3'" sing N N 178
OHU "O3'" "HO3'" sing N N 179
OHU "C4'" "H4'" sing N N 180
OHU "C5'" "H5'" sing N N 181
OHU "C5'" "H5'A" sing N N 182
OHU OP2 HOP2 sing N N 183
OHU OP3 HOP3 sing N N 184
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
7YGO 'double helix'
7YGO 'a-form double helix'
7YGO 'internal loop'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 12 6_557 -0.683 0.022 0.182 -5.494 -8.728 6.884 1 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 1_555 A DC 11 6_557 -0.613 -0.307 -0.474 -14.557 -17.232 2.402 2 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 1_555 A DT 10 6_557 0.367 -0.265 -0.352 -8.987 -7.724 -4.169 3 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 1_555 A DG 9 6_557 0.004 0.027 -0.048 8.695 -6.998 1.888 4 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 1_555 A DG 8 6_557 0.373 -0.429 -0.138 13.022 -5.355 1.361 5 A_DC5:DG8_A A 5 ? A 8 ? 19 1
1 A DG 1 6_557 A DC 12 1_555 -0.683 0.022 0.182 -5.494 -8.728 6.884 6 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 6_557 A DC 11 1_555 -0.613 -0.307 -0.474 -14.557 -17.232 2.402 7 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 6_557 A DT 10 1_555 0.367 -0.265 -0.352 -8.987 -7.724 -4.169 8 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 6_557 A DG 9 1_555 0.004 0.027 -0.048 8.695 -6.998 1.888 9 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 6_557 A DG 8 1_555 0.373 -0.429 -0.138 13.022 -5.355 1.361 10 A_DC5:DG8_A A 5 ? A 8 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 12 6_557 A DG 2 1_555 A DC 11 6_557 0.079 -1.144 3.546 7.489 5.956 38.586 -2.421 0.810 3.299 8.848
-11.126 39.711 1 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 1_555 A DC 11 6_557 A DA 3 1_555 A DT 10 6_557 -0.496 -0.562 3.135 -0.169 3.671 37.572 -1.319 0.746 3.071 5.683 0.262
37.745 2 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 1_555 A DT 10 6_557 A DC 4 1_555 A DG 9 6_557 1.080 -1.320 2.886 -2.578 11.661 28.365 -4.304 -2.439 2.089 22.574 4.989
30.729 3 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 1_555 A DG 9 6_557 A DC 5 1_555 A DG 8 6_557 -0.514 -1.735 3.193 -1.166 6.864 28.129 -4.861 0.791 2.720 13.856 2.353
28.961 4 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
1 A DG 1 6_557 A DC 12 1_555 A DG 2 6_557 A DC 11 1_555 0.079 -1.144 3.546 7.489 5.956 38.586 -2.421 0.810 3.299 8.848
-11.126 39.711 5 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 6_557 A DC 11 1_555 A DA 3 6_557 A DT 10 1_555 -0.496 -0.562 3.135 -0.169 3.671 37.572 -1.319 0.746 3.071 5.683 0.262
37.745 6 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 6_557 A DT 10 1_555 A DC 4 6_557 A DG 9 1_555 1.080 -1.320 2.886 -2.578 11.661 28.365 -4.304 -2.439 2.089 22.574 4.989
30.729 7 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 6_557 A DG 9 1_555 A DC 5 6_557 A DG 8 1_555 -0.514 -1.735 3.193 -1.166 6.864 28.129 -4.861 0.791 2.720 13.856 2.353
28.961 8 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
#
_pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)'
_pdbx_audit_support.country Japan
_pdbx_audit_support.grant_number 18K19308
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id OHU
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id OHU
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_atom_sites.entry_id 7YGO
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.026784
_atom_sites.fract_transf_matrix[1][2] 0.015464
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.030927
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018202
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
HG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -18.080 6.507 57.092 1.00 68.16 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -17.641 5.399 57.860 1.00 66.70 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -16.498 4.670 57.170 1.00 69.66 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -16.676 4.708 55.732 1.00 67.75 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -15.123 5.266 57.386 1.00 70.94 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -14.595 4.832 58.615 1.00 75.85 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -14.358 4.669 56.216 1.00 69.82 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -15.394 4.785 55.104 1.00 69.21 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -15.307 6.048 54.366 1.00 67.69 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -16.250 7.048 54.329 1.00 66.45 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -15.898 8.067 53.598 1.00 65.46 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -14.635 7.725 53.125 1.00 66.56 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? -13.755 8.446 52.277 1.00 66.25 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? -13.934 9.558 51.757 1.00 65.23 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -12.573 7.740 52.033 1.00 64.81 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -12.284 6.496 52.539 1.00 67.49 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -11.098 5.977 52.189 1.00 65.96 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -13.095 5.814 53.354 1.00 68.19 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -14.252 6.489 53.596 1.00 65.34 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? -13.698 5.833 59.490 1.00 74.57 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? -13.469 5.195 60.798 1.00 75.34 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? -14.330 7.167 59.335 1.00 73.55 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? -12.295 5.849 58.738 1.00 77.36 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? -11.515 4.676 58.701 1.00 76.40 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? -10.347 4.843 57.750 1.00 73.14 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? -10.831 5.171 56.434 1.00 71.86 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? -9.412 5.974 58.094 1.00 72.20 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? -8.505 5.544 59.079 1.00 77.77 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? -8.725 6.209 56.755 1.00 73.21 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? -9.907 6.060 55.796 1.00 72.57 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? -10.609 7.320 55.484 1.00 69.44 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? -11.795 7.767 56.037 1.00 69.49 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? -12.198 8.915 55.561 1.00 65.91 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? -11.215 9.257 54.636 1.00 65.64 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? -11.108 10.392 53.802 1.00 64.57 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? -11.890 11.355 53.696 1.00 65.97 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? -9.967 10.346 53.020 1.00 66.01 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? -9.044 9.330 53.036 1.00 67.00 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? -8.008 9.470 52.208 1.00 69.11 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? -9.122 8.261 53.813 1.00 67.62 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? -10.233 8.286 54.579 1.00 66.61 ? 2 DG A C4 1
ATOM 42 P P . DA A 1 3 ? -7.815 6.618 60.044 1.00 72.23 ? 3 DA A P 1
ATOM 43 O OP1 . DA A 1 3 ? -7.068 5.887 61.080 1.00 74.76 ? 3 DA A OP1 1
ATOM 44 O OP2 . DA A 1 3 ? -8.870 7.576 60.419 1.00 78.12 ? 3 DA A OP2 1
ATOM 45 O "O5'" . DA A 1 3 ? -6.803 7.395 59.093 1.00 74.56 ? 3 DA A "O5'" 1
ATOM 46 C "C5'" . DA A 1 3 ? -5.682 6.724 58.552 1.00 75.13 ? 3 DA A "C5'" 1
ATOM 47 C "C4'" . DA A 1 3 ? -4.949 7.630 57.583 1.00 73.02 ? 3 DA A "C4'" 1
ATOM 48 O "O4'" . DA A 1 3 ? -5.775 7.884 56.416 1.00 71.14 ? 3 DA A "O4'" 1
ATOM 49 C "C3'" . DA A 1 3 ? -4.631 9.008 58.120 1.00 70.51 ? 3 DA A "C3'" 1
ATOM 50 O "O3'" . DA A 1 3 ? -3.464 8.959 58.924 1.00 73.55 ? 3 DA A "O3'" 1
ATOM 51 C "C2'" . DA A 1 3 ? -4.407 9.773 56.821 1.00 71.32 ? 3 DA A "C2'" 1
ATOM 52 C "C1'" . DA A 1 3 ? -5.552 9.224 55.966 1.00 70.55 ? 3 DA A "C1'" 1
ATOM 53 N N9 . DA A 1 3 ? -6.800 9.973 56.128 1.00 69.63 ? 3 DA A N9 1
ATOM 54 C C8 . DA A 1 3 ? -7.802 9.708 57.015 1.00 66.97 ? 3 DA A C8 1
ATOM 55 N N7 . DA A 1 3 ? -8.808 10.548 56.943 1.00 65.40 ? 3 DA A N7 1
ATOM 56 C C5 . DA A 1 3 ? -8.445 11.426 55.937 1.00 65.63 ? 3 DA A C5 1
ATOM 57 C C6 . DA A 1 3 ? -9.087 12.551 55.380 1.00 66.01 ? 3 DA A C6 1
ATOM 58 N N6 . DA A 1 3 ? -10.287 12.989 55.776 1.00 66.54 ? 3 DA A N6 1
ATOM 59 N N1 . DA A 1 3 ? -8.450 13.211 54.400 1.00 67.02 ? 3 DA A N1 1
ATOM 60 C C2 . DA A 1 3 ? -7.254 12.762 53.994 1.00 67.32 ? 3 DA A C2 1
ATOM 61 N N3 . DA A 1 3 ? -6.549 11.723 54.441 1.00 66.69 ? 3 DA A N3 1
ATOM 62 C C4 . DA A 1 3 ? -7.208 11.090 55.422 1.00 67.66 ? 3 DA A C4 1
ATOM 63 P P . DC A 1 4 ? -3.325 9.928 60.193 1.00 78.27 ? 4 DC A P 1
ATOM 64 O OP1 . DC A 1 4 ? -2.073 9.575 60.885 1.00 83.60 ? 4 DC A OP1 1
ATOM 65 O OP2 . DC A 1 4 ? -4.596 9.907 60.951 1.00 75.95 ? 4 DC A OP2 1
ATOM 66 O "O5'" . DC A 1 4 ? -3.165 11.368 59.530 1.00 74.87 ? 4 DC A "O5'" 1
ATOM 67 C "C5'" . DC A 1 4 ? -2.041 11.643 58.735 1.00 71.51 ? 4 DC A "C5'" 1
ATOM 68 C "C4'" . DC A 1 4 ? -2.237 12.937 57.970 1.00 70.30 ? 4 DC A "C4'" 1
ATOM 69 O "O4'" . DC A 1 4 ? -3.368 12.803 57.090 1.00 69.92 ? 4 DC A "O4'" 1
ATOM 70 C "C3'" . DC A 1 4 ? -2.587 14.156 58.814 1.00 72.75 ? 4 DC A "C3'" 1
ATOM 71 O "O3'" . DC A 1 4 ? -1.413 14.706 59.408 1.00 72.31 ? 4 DC A "O3'" 1
ATOM 72 C "C2'" . DC A 1 4 ? -3.166 15.073 57.738 1.00 71.98 ? 4 DC A "C2'" 1
ATOM 73 C "C1'" . DC A 1 4 ? -3.985 14.077 56.917 1.00 70.49 ? 4 DC A "C1'" 1
ATOM 74 N N1 . DC A 1 4 ? -5.425 14.008 57.354 1.00 67.19 ? 4 DC A N1 1
ATOM 75 C C2 . DC A 1 4 ? -6.330 14.924 56.829 1.00 67.64 ? 4 DC A C2 1
ATOM 76 O O2 . DC A 1 4 ? -5.931 15.758 56.005 1.00 72.37 ? 4 DC A O2 1
ATOM 77 N N3 . DC A 1 4 ? -7.617 14.877 57.223 1.00 66.44 ? 4 DC A N3 1
ATOM 78 C C4 . DC A 1 4 ? -8.011 13.970 58.118 1.00 65.80 ? 4 DC A C4 1
ATOM 79 N N4 . DC A 1 4 ? -9.301 13.972 58.475 1.00 60.81 ? 4 DC A N4 1
ATOM 80 C C5 . DC A 1 4 ? -7.104 13.021 58.672 1.00 66.06 ? 4 DC A C5 1
ATOM 81 C C6 . DC A 1 4 ? -5.828 13.079 58.267 1.00 68.18 ? 4 DC A C6 1
ATOM 82 P P . DC A 1 5 ? -1.509 15.736 60.633 1.00 73.87 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? -0.102 16.048 60.961 1.00 81.72 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? -2.402 15.233 61.698 1.00 71.30 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? -2.214 17.035 60.004 1.00 74.49 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? -1.522 17.843 59.081 1.00 69.01 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? -2.375 19.025 58.663 1.00 69.65 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? -3.505 18.567 57.887 1.00 72.70 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? -3.005 19.826 59.790 1.00 68.76 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? -2.055 20.742 60.333 1.00 68.94 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? -4.099 20.559 59.023 1.00 68.93 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? -4.591 19.470 58.058 1.00 68.95 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? -5.764 18.729 58.599 1.00 70.55 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? -7.049 19.243 58.412 1.00 68.93 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? -7.188 20.283 57.763 1.00 66.88 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? -8.109 18.579 58.950 1.00 67.89 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? -7.911 17.455 59.646 1.00 64.08 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? -8.976 16.834 60.140 1.00 62.57 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? -6.613 16.917 59.848 1.00 64.70 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? -5.575 17.584 59.330 1.00 69.15 ? 5 DC A C6 1
ATOM 101 P P . DT A 1 6 ? -2.272 21.430 61.767 1.00 71.81 ? 6 DT A P 1
ATOM 102 O OP1 . DT A 1 6 ? -1.185 22.426 61.912 1.00 72.32 ? 6 DT A OP1 1
ATOM 103 O OP2 . DT A 1 6 ? -2.493 20.379 62.778 1.00 70.19 ? 6 DT A OP2 1
ATOM 104 O "O5'" . DT A 1 6 ? -3.649 22.235 61.647 1.00 68.81 ? 6 DT A "O5'" 1
ATOM 105 C "C5'" . DT A 1 6 ? -3.661 23.515 61.057 1.00 69.48 ? 6 DT A "C5'" 1
ATOM 106 C "C4'" . DT A 1 6 ? -5.074 24.065 60.972 1.00 67.69 ? 6 DT A "C4'" 1
ATOM 107 O "O4'" . DT A 1 6 ? -5.925 23.109 60.306 1.00 68.76 ? 6 DT A "O4'" 1
ATOM 108 C "C3'" . DT A 1 6 ? -5.764 24.276 62.298 1.00 72.38 ? 6 DT A "C3'" 1
ATOM 109 O "O3'" . DT A 1 6 ? -5.364 25.484 62.881 1.00 75.04 ? 6 DT A "O3'" 1
ATOM 110 C "C2'" . DT A 1 6 ? -7.222 24.318 61.877 1.00 69.71 ? 6 DT A "C2'" 1
ATOM 111 C "C1'" . DT A 1 6 ? -7.247 23.217 60.833 1.00 70.32 ? 6 DT A "C1'" 1
ATOM 112 N N1 . DT A 1 6 ? -7.679 21.888 61.373 1.00 69.66 ? 6 DT A N1 1
ATOM 113 C C2 . DT A 1 6 ? -9.022 21.605 61.442 1.00 69.47 ? 6 DT A C2 1
ATOM 114 O O2 . DT A 1 6 ? -9.899 22.379 61.109 1.00 69.93 ? 6 DT A O2 1
ATOM 115 N N3 . DT A 1 6 ? -9.310 20.378 61.923 1.00 72.49 ? 6 DT A N3 1
ATOM 116 C C4 . DT A 1 6 ? -8.440 19.404 62.355 1.00 69.68 ? 6 DT A C4 1
ATOM 117 O O4 . DT A 1 6 ? -8.829 18.327 62.775 1.00 67.62 ? 6 DT A O4 1
ATOM 118 C C5 . DT A 1 6 ? -7.049 19.739 62.254 1.00 69.83 ? 6 DT A C5 1
ATOM 119 C C7 . DT A 1 6 ? -6.009 18.749 62.687 1.00 67.96 ? 6 DT A C7 1
ATOM 120 C C6 . DT A 1 6 ? -6.730 20.956 61.766 1.00 69.74 ? 6 DT A C6 1
HETATM 121 P P . OHU A 1 7 ? -5.381 25.623 64.476 1.00 76.27 ? 7 OHU A P 1
HETATM 122 N N1 . OHU A 1 7 ? -10.093 23.474 65.135 1.00 78.99 ? 7 OHU A N1 1
HETATM 123 C C2 . OHU A 1 7 ? -10.968 22.410 65.274 1.00 78.62 ? 7 OHU A C2 1
HETATM 124 O O2 . OHU A 1 7 ? -12.189 22.465 65.273 1.00 79.25 ? 7 OHU A O2 1
HETATM 125 N N3 . OHU A 1 7 ? -10.357 21.215 65.435 1.00 76.51 ? 7 OHU A N3 1
HETATM 126 C C4 . OHU A 1 7 ? -9.014 20.913 65.475 1.00 77.45 ? 7 OHU A C4 1
HETATM 127 O O4 . OHU A 1 7 ? -8.589 19.765 65.638 1.00 77.39 ? 7 OHU A O4 1
HETATM 128 C C5 . OHU A 1 7 ? -8.151 22.048 65.322 1.00 76.51 ? 7 OHU A C5 1
HETATM 129 O O5 . OHU A 1 7 ? -6.777 21.845 65.357 1.00 77.09 ? 7 OHU A O5 1
HETATM 130 C C6 . OHU A 1 7 ? -8.724 23.251 65.161 1.00 76.21 ? 7 OHU A C6 1
HETATM 131 C "C1'" . OHU A 1 7 ? -10.599 24.894 64.935 1.00 78.68 ? 7 OHU A "C1'" 1
HETATM 132 C "C2'" . OHU A 1 7 ? -10.756 25.721 66.206 1.00 81.60 ? 7 OHU A "C2'" 1
HETATM 133 C "C3'" . OHU A 1 7 ? -9.360 26.325 66.337 1.00 81.54 ? 7 OHU A "C3'" 1
HETATM 134 O "O3'" . OHU A 1 7 ? -9.306 27.450 67.230 1.00 79.10 ? 7 OHU A "O3'" 1
HETATM 135 C "C4'" . OHU A 1 7 ? -9.111 26.737 64.903 1.00 78.02 ? 7 OHU A "C4'" 1
HETATM 136 O "O4'" . OHU A 1 7 ? -9.645 25.615 64.159 1.00 77.90 ? 7 OHU A "O4'" 1
HETATM 137 C "C5'" . OHU A 1 7 ? -7.649 26.925 64.543 1.00 76.75 ? 7 OHU A "C5'" 1
HETATM 138 O "O5'" . OHU A 1 7 ? -6.940 25.738 64.856 1.00 73.46 ? 7 OHU A "O5'" 1
HETATM 139 O OP1 . OHU A 1 7 ? -4.724 26.919 64.768 1.00 81.93 ? 7 OHU A OP1 1
HETATM 140 O OP2 . OHU A 1 7 ? -4.924 24.336 65.035 1.00 70.58 ? 7 OHU A OP2 1
ATOM 141 P P . DG A 1 8 ? -8.905 27.232 68.765 1.00 83.28 ? 8 DG A P 1
ATOM 142 O OP1 . DG A 1 8 ? -8.865 28.579 69.378 1.00 87.55 ? 8 DG A OP1 1
ATOM 143 O OP2 . DG A 1 8 ? -7.699 26.371 68.844 1.00 80.12 ? 8 DG A OP2 1
ATOM 144 O "O5'" . DG A 1 8 ? -10.145 26.420 69.359 1.00 81.20 ? 8 DG A "O5'" 1
ATOM 145 C "C5'" . DG A 1 8 ? -11.396 27.072 69.517 1.00 82.22 ? 8 DG A "C5'" 1
ATOM 146 C "C4'" . DG A 1 8 ? -12.433 26.126 70.084 1.00 79.86 ? 8 DG A "C4'" 1
ATOM 147 O "O4'" . DG A 1 8 ? -12.741 25.110 69.104 1.00 81.53 ? 8 DG A "O4'" 1
ATOM 148 C "C3'" . DG A 1 8 ? -11.998 25.357 71.311 1.00 77.59 ? 8 DG A "C3'" 1
ATOM 149 O "O3'" . DG A 1 8 ? -12.238 26.139 72.470 1.00 85.22 ? 8 DG A "O3'" 1
ATOM 150 C "C2'" . DG A 1 8 ? -12.934 24.156 71.266 1.00 78.30 ? 8 DG A "C2'" 1
ATOM 151 C "C1'" . DG A 1 8 ? -13.051 23.891 69.766 1.00 78.47 ? 8 DG A "C1'" 1
ATOM 152 N N9 . DG A 1 8 ? -12.133 22.853 69.303 1.00 75.44 ? 8 DG A N9 1
ATOM 153 C C8 . DG A 1 8 ? -10.934 23.032 68.657 1.00 76.79 ? 8 DG A C8 1
ATOM 154 N N7 . DG A 1 8 ? -10.316 21.913 68.388 1.00 75.94 ? 8 DG A N7 1
ATOM 155 C C5 . DG A 1 8 ? -11.157 20.932 68.894 1.00 74.46 ? 8 DG A C5 1
ATOM 156 C C6 . DG A 1 8 ? -11.023 19.521 68.888 1.00 71.04 ? 8 DG A C6 1
ATOM 157 O O6 . DG A 1 8 ? -10.104 18.837 68.431 1.00 69.77 ? 8 DG A O6 1
ATOM 158 N N1 . DG A 1 8 ? -12.103 18.903 69.497 1.00 71.14 ? 8 DG A N1 1
ATOM 159 C C2 . DG A 1 8 ? -13.178 19.562 70.051 1.00 71.98 ? 8 DG A C2 1
ATOM 160 N N2 . DG A 1 8 ? -14.124 18.787 70.603 1.00 70.46 ? 8 DG A N2 1
ATOM 161 N N3 . DG A 1 8 ? -13.319 20.883 70.060 1.00 70.54 ? 8 DG A N3 1
ATOM 162 C C4 . DG A 1 8 ? -12.279 21.499 69.463 1.00 72.53 ? 8 DG A C4 1
ATOM 163 P P . DG A 1 9 ? -11.355 25.940 73.805 1.00 87.50 ? 9 DG A P 1
ATOM 164 O OP1 . DG A 1 9 ? -11.984 26.843 74.788 1.00 85.66 ? 9 DG A OP1 1
ATOM 165 O OP2 . DG A 1 9 ? -9.918 26.061 73.425 1.00 78.78 ? 9 DG A OP2 1
ATOM 166 O "O5'" . DG A 1 9 ? -11.606 24.419 74.276 1.00 73.54 ? 9 DG A "O5'" 1
ATOM 167 C "C5'" . DG A 1 9 ? -12.743 24.083 75.017 1.00 75.77 ? 9 DG A "C5'" 1
ATOM 168 C "C4'" . DG A 1 9 ? -13.023 22.591 74.947 1.00 74.22 ? 9 DG A "C4'" 1
ATOM 169 O "O4'" . DG A 1 9 ? -12.717 22.094 73.638 1.00 74.84 ? 9 DG A "O4'" 1
ATOM 170 C "C3'" . DG A 1 9 ? -12.186 21.710 75.843 1.00 74.12 ? 9 DG A "C3'" 1
ATOM 171 O "O3'" . DG A 1 9 ? -12.691 21.740 77.174 1.00 75.65 ? 9 DG A "O3'" 1
ATOM 172 C "C2'" . DG A 1 9 ? -12.424 20.340 75.201 1.00 73.83 ? 9 DG A "C2'" 1
ATOM 173 C "C1'" . DG A 1 9 ? -12.560 20.685 73.722 1.00 71.53 ? 9 DG A "C1'" 1
ATOM 174 N N9 . DG A 1 9 ? -11.390 20.281 72.947 1.00 74.09 ? 9 DG A N9 1
ATOM 175 C C8 . DG A 1 9 ? -10.432 21.094 72.391 1.00 71.19 ? 9 DG A C8 1
ATOM 176 N N7 . DG A 1 9 ? -9.490 20.429 71.769 1.00 72.89 ? 9 DG A N7 1
ATOM 177 C C5 . DG A 1 9 ? -9.846 19.096 71.932 1.00 70.14 ? 9 DG A C5 1
ATOM 178 C C6 . DG A 1 9 ? -9.203 17.921 71.496 1.00 68.73 ? 9 DG A C6 1
ATOM 179 O O6 . DG A 1 9 ? -8.163 17.815 70.836 1.00 70.87 ? 9 DG A O6 1
ATOM 180 N N1 . DG A 1 9 ? -9.898 16.775 71.884 1.00 68.61 ? 9 DG A N1 1
ATOM 181 C C2 . DG A 1 9 ? -11.057 16.772 72.609 1.00 67.83 ? 9 DG A C2 1
ATOM 182 N N2 . DG A 1 9 ? -11.577 15.571 72.891 1.00 69.25 ? 9 DG A N2 1
ATOM 183 N N3 . DG A 1 9 ? -11.662 17.863 73.031 1.00 68.84 ? 9 DG A N3 1
ATOM 184 C C4 . DG A 1 9 ? -11.006 18.987 72.660 1.00 72.24 ? 9 DG A C4 1
ATOM 185 P P . DT A 1 10 ? -11.726 21.450 78.428 1.00 72.03 ? 10 DT A P 1
ATOM 186 O OP1 . DT A 1 10 ? -12.361 22.082 79.601 1.00 77.53 ? 10 DT A OP1 1
ATOM 187 O OP2 . DT A 1 10 ? -10.365 21.885 78.060 1.00 75.48 ? 10 DT A OP2 1
ATOM 188 O "O5'" . DT A 1 10 ? -11.729 19.855 78.596 1.00 69.29 ? 10 DT A "O5'" 1
ATOM 189 C "C5'" . DT A 1 10 ? -12.944 19.165 78.846 1.00 74.35 ? 10 DT A "C5'" 1
ATOM 190 C "C4'" . DT A 1 10 ? -12.724 17.655 78.847 1.00 74.77 ? 10 DT A "C4'" 1
ATOM 191 O "O4'" . DT A 1 10 ? -12.136 17.235 77.574 1.00 71.80 ? 10 DT A "O4'" 1
ATOM 192 C "C3'" . DT A 1 10 ? -11.777 17.149 79.934 1.00 74.28 ? 10 DT A "C3'" 1
ATOM 193 O "O3'" . DT A 1 10 ? -12.282 15.979 80.507 1.00 76.82 ? 10 DT A "O3'" 1
ATOM 194 C "C2'" . DT A 1 10 ? -10.493 16.854 79.170 1.00 75.44 ? 10 DT A "C2'" 1
ATOM 195 C "C1'" . DT A 1 10 ? -11.036 16.387 77.832 1.00 71.30 ? 10 DT A "C1'" 1
ATOM 196 N N1 . DT A 1 10 ? -10.067 16.571 76.759 1.00 69.87 ? 10 DT A N1 1
ATOM 197 C C2 . DT A 1 10 ? -9.594 15.485 76.049 1.00 69.80 ? 10 DT A C2 1
ATOM 198 O O2 . DT A 1 10 ? -9.946 14.333 76.244 1.00 70.90 ? 10 DT A O2 1
ATOM 199 N N3 . DT A 1 10 ? -8.696 15.801 75.076 1.00 69.55 ? 10 DT A N3 1
ATOM 200 C C4 . DT A 1 10 ? -8.218 17.049 74.753 1.00 67.22 ? 10 DT A C4 1
ATOM 201 O O4 . DT A 1 10 ? -7.401 17.214 73.858 1.00 68.89 ? 10 DT A O4 1
ATOM 202 C C5 . DT A 1 10 ? -8.743 18.135 75.543 1.00 68.59 ? 10 DT A C5 1
ATOM 203 C C7 . DT A 1 10 ? -8.304 19.542 75.296 1.00 68.17 ? 10 DT A C7 1
ATOM 204 C C6 . DT A 1 10 ? -9.626 17.845 76.496 1.00 71.13 ? 10 DT A C6 1
ATOM 205 P P . DC A 1 11 ? -11.826 15.560 81.989 1.00 83.33 ? 11 DC A P 1
ATOM 206 O OP1 . DC A 1 11 ? -13.062 15.039 82.624 1.00 79.62 ? 11 DC A OP1 1
ATOM 207 O OP2 . DC A 1 11 ? -11.100 16.708 82.580 1.00 76.32 ? 11 DC A OP2 1
ATOM 208 O "O5'" . DC A 1 11 ? -10.784 14.360 81.755 1.00 77.64 ? 11 DC A "O5'" 1
ATOM 209 C "C5'" . DC A 1 11 ? -11.173 13.231 80.981 1.00 75.04 ? 11 DC A "C5'" 1
ATOM 210 C "C4'" . DC A 1 11 ? -9.960 12.484 80.456 1.00 76.31 ? 11 DC A "C4'" 1
ATOM 211 O "O4'" . DC A 1 11 ? -9.376 13.205 79.338 1.00 74.22 ? 11 DC A "O4'" 1
ATOM 212 C "C3'" . DC A 1 11 ? -8.824 12.273 81.470 1.00 76.37 ? 11 DC A "C3'" 1
ATOM 213 O "O3'" . DC A 1 11 ? -8.557 10.886 81.605 1.00 80.29 ? 11 DC A "O3'" 1
ATOM 214 C "C2'" . DC A 1 11 ? -7.627 13.004 80.849 1.00 76.15 ? 11 DC A "C2'" 1
ATOM 215 C "C1'" . DC A 1 11 ? -7.982 13.013 79.368 1.00 73.73 ? 11 DC A "C1'" 1
ATOM 216 N N1 . DC A 1 11 ? -7.323 14.128 78.612 1.00 70.38 ? 11 DC A N1 1
ATOM 217 C C2 . DC A 1 11 ? -6.583 13.850 77.460 1.00 68.63 ? 11 DC A C2 1
ATOM 218 O O2 . DC A 1 11 ? -6.482 12.682 77.075 1.00 72.21 ? 11 DC A O2 1
ATOM 219 N N3 . DC A 1 11 ? -5.991 14.868 76.797 1.00 66.46 ? 11 DC A N3 1
ATOM 220 C C4 . DC A 1 11 ? -6.118 16.116 77.243 1.00 67.39 ? 11 DC A C4 1
ATOM 221 N N4 . DC A 1 11 ? -5.517 17.089 76.551 1.00 65.15 ? 11 DC A N4 1
ATOM 222 C C5 . DC A 1 11 ? -6.866 16.423 78.417 1.00 69.10 ? 11 DC A C5 1
ATOM 223 C C6 . DC A 1 11 ? -7.441 15.407 79.066 1.00 69.99 ? 11 DC A C6 1
ATOM 224 P P . DC A 1 12 ? -7.568 10.345 82.753 1.00 92.16 ? 12 DC A P 1
ATOM 225 O OP1 . DC A 1 12 ? -8.116 9.030 83.163 1.00 91.97 ? 12 DC A OP1 1
ATOM 226 O OP2 . DC A 1 12 ? -7.362 11.398 83.789 1.00 83.44 ? 12 DC A OP2 1
ATOM 227 O "O5'" . DC A 1 12 ? -6.178 10.112 81.975 1.00 83.04 ? 12 DC A "O5'" 1
ATOM 228 C "C5'" . DC A 1 12 ? -6.086 9.122 80.925 1.00 82.23 ? 12 DC A "C5'" 1
ATOM 229 C "C4'" . DC A 1 12 ? -4.643 8.965 80.450 1.00 80.07 ? 12 DC A "C4'" 1
ATOM 230 O "O4'" . DC A 1 12 ? -4.421 9.795 79.285 1.00 77.51 ? 12 DC A "O4'" 1
ATOM 231 C "C3'" . DC A 1 12 ? -3.599 9.411 81.457 1.00 80.59 ? 12 DC A "C3'" 1
ATOM 232 O "O3'" . DC A 1 12 ? -3.245 8.325 82.303 1.00 92.14 ? 12 DC A "O3'" 1
ATOM 233 C "C2'" . DC A 1 12 ? -2.428 9.820 80.581 1.00 78.61 ? 12 DC A "C2'" 1
ATOM 234 C "C1'" . DC A 1 12 ? -3.110 10.337 79.316 1.00 76.03 ? 12 DC A "C1'" 1
ATOM 235 N N1 . DC A 1 12 ? -3.189 11.839 79.239 1.00 72.55 ? 12 DC A N1 1
ATOM 236 C C2 . DC A 1 12 ? -2.373 12.523 78.334 1.00 70.75 ? 12 DC A C2 1
ATOM 237 O O2 . DC A 1 12 ? -1.596 11.876 77.613 1.00 70.27 ? 12 DC A O2 1
ATOM 238 N N3 . DC A 1 12 ? -2.452 13.878 78.266 1.00 67.24 ? 12 DC A N3 1
ATOM 239 C C4 . DC A 1 12 ? -3.293 14.536 79.050 1.00 67.24 ? 12 DC A C4 1
ATOM 240 N N4 . DC A 1 12 ? -3.332 15.866 78.939 1.00 67.60 ? 12 DC A N4 1
ATOM 241 C C5 . DC A 1 12 ? -4.135 13.862 79.984 1.00 70.56 ? 12 DC A C5 1
ATOM 242 C C6 . DC A 1 12 ? -4.054 12.524 80.043 1.00 72.56 ? 12 DC A C6 1
HETATM 243 HG HG . HG B 2 . ? -11.080 19.543 62.471 0.52 81.86 ? 101 HG A HG 1
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